prot_M-pyrifera_M_contig88398.20528.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig88398.20528.1
Unique Nameprot_M-pyrifera_M_contig88398.20528.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length85
Homology
BLAST of mRNA_M-pyrifera_M_contig88398.20528.1 vs. uniprot
Match: A0A5C7XVG3_9MYCO (Tyr recombinase domain-containing protein n=2 Tax=Actinomycetia TaxID=1760 RepID=A0A5C7XVG3_9MYCO)

HSP 1 Score: 97.1 bits (240), Expect = 5.910e-22
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 0
Query:   18 YLFSSQSGSGGPIRPDRLSKRWPMARGDSAITIAHIRHFAATSMLDAGESYRTVADILGNSETTLRLH 85
            ++F S   +  P+RP+ L+ RW  +RG S IT+ H+RHFAATSMLDAGESYRTVADILGNSE+TLRLH
Sbjct:  313 FVFPSAGSAHLPLRPESLTGRWAASRGTSPITLLHLRHFAATSMLDAGESYRTVADILGNSESTLRLH 380          
BLAST of mRNA_M-pyrifera_M_contig88398.20528.1 vs. uniprot
Match: A0A7K1B251_9ACTN (Tyrosine-type recombinase/integrase n=2 Tax=root TaxID=1 RepID=A0A7K1B251_9ACTN)

HSP 1 Score: 97.1 bits (240), Expect = 6.010e-22
Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 0
Query:    1 RQKRRTLEVHAEIDRDGYLFSSQSGSGGPIRPDRLSKRWPMARGDSAITIAHIRHFAATSMLDAGESYRTVADILGNSETTLRLH 85
            R++    E   E+    Y+F        PIRPD  + RW   RGDS +T+  +RHF AT+MLDAGESYRTVADILGNSE TLRLH
Sbjct:  299 RRQHARAEERGEVGPSDYVFPGSPDPSVPIRPDTFADRWLACRGDSPVTLLQLRHFVATTMLDAGESYRTVADILGNSENTLRLH 383          
BLAST of mRNA_M-pyrifera_M_contig88398.20528.1 vs. uniprot
Match: A0A6N7FNE4_9ACTN (Tyrosine-type recombinase/integrase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FNE4_9ACTN)

HSP 1 Score: 93.6 bits (231), Expect = 1.200e-20
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 0
Query:   18 YLFSSQSGSGGPIRPDRLSKRWPMARGDSAITIAHIRHFAATSMLDAGESYRTVADILGNSETTLRLH 85
            Y+F ++ G   P RPD    R+  ARGD  +T  H+RHF AT+MLDAGE YRTVADILGNSETTLRLH
Sbjct:  324 YVFPNRCGPDSPHRPDSFGDRFATARGDHEVTFLHLRHFTATTMLDAGEDYRTVADILGNSETTLRLH 391          
BLAST of mRNA_M-pyrifera_M_contig88398.20528.1 vs. uniprot
Match: A0A832BAG4_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A832BAG4_9ACTN)

HSP 1 Score: 81.6 bits (200), Expect = 1.740e-18
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 0
Query:   35 LSKRWPMARGDSAITIAHIRHFAATSMLDAGESYRTVADILGNSETTLRLH 85
            +S RW  ARG S +T+ H+RH AAT+MLDAGESYRTV DILGNSE+TLRLH
Sbjct:    1 MSNRWAAARGTSELTLQHLRHLAATAMLDAGESYRTVTDILGNSESTLRLH 51          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88398.20528.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A5C7XVG3_9MYCO5.910e-2266.18Tyr recombinase domain-containing protein n=2 Tax=... [more]
A0A7K1B251_9ACTN6.010e-2254.12Tyrosine-type recombinase/integrase n=2 Tax=root T... [more]
A0A6N7FNE4_9ACTN1.200e-2063.24Tyrosine-type recombinase/integrase n=1 Tax=Acidim... [more]
A0A832BAG4_9ACTN1.740e-1872.55Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013762Integrase-like, catalytic domain superfamilyGENE3D1.10.443.10coord: 1..85
e-value: 7.6E-10
score: 40.5
IPR011010DNA breaking-rejoining enzyme, catalytic coreSUPERFAMILY56349DNA breaking-rejoining enzymescoord: 12..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88398contigM-pyrifera_M_contig88398:527..781 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88398.20528.1mRNA_M-pyrifera_M_contig88398.20528.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig88398 527..781 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig88398.20528.1 ID=prot_M-pyrifera_M_contig88398.20528.1|Name=mRNA_M-pyrifera_M_contig88398.20528.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
RQKRRTLEVHAEIDRDGYLFSSQSGSGGPIRPDRLSKRWPMARGDSAITI
AHIRHFAATSMLDAGESYRTVADILGNSETTLRLH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013762Integrase-like_cat_sf
IPR011010DNA_brk_join_enz