mRNA_M-pyrifera_M_contig88398.20528.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88398.20528.1
Unique NamemRNA_M-pyrifera_M_contig88398.20528.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88398.20528.1 vs. uniprot
Match: A0A5C7XVG3_9MYCO (Tyr recombinase domain-containing protein n=2 Tax=Actinomycetia TaxID=1760 RepID=A0A5C7XVG3_9MYCO)

HSP 1 Score: 97.1 bits (240), Expect = 5.910e-22
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:   52 YLFSSQSGSGGPIRPDRLSKRWPMARGDSAITIAHIRHFAATSMLDAGESYRTVADILGNSETTLRLH 255
            ++F S   +  P+RP+ L+ RW  +RG S IT+ H+RHFAATSMLDAGESYRTVADILGNSE+TLRLH
Sbjct:  313 FVFPSAGSAHLPLRPESLTGRWAASRGTSPITLLHLRHFAATSMLDAGESYRTVADILGNSESTLRLH 380
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BLAST of mRNA_M-pyrifera_M_contig88398.20528.1 vs. uniprot
Match: A0A7K1B251_9ACTN (Tyrosine-type recombinase/integrase n=2 Tax=root TaxID=1 RepID=A0A7K1B251_9ACTN)

HSP 1 Score: 97.1 bits (240), Expect = 6.010e-22
Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:    1 RQKRRTLEVHAEIDRDGYLFSSQSGSGGPIRPDRLSKRWPMARGDSAITIAHIRHFAATSMLDAGESYRTVADILGNSETTLRLH 255
            R++    E   E+    Y+F        PIRPD  + RW   RGDS +T+  +RHF AT+MLDAGESYRTVADILGNSE TLRLH
Sbjct:  299 RRQHARAEERGEVGPSDYVFPGSPDPSVPIRPDTFADRWLACRGDSPVTLLQLRHFVATTMLDAGESYRTVADILGNSENTLRLH 383
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BLAST of mRNA_M-pyrifera_M_contig88398.20528.1 vs. uniprot
Match: A0A6N7FNE4_9ACTN (Tyrosine-type recombinase/integrase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FNE4_9ACTN)

HSP 1 Score: 93.6 bits (231), Expect = 1.200e-20
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:   52 YLFSSQSGSGGPIRPDRLSKRWPMARGDSAITIAHIRHFAATSMLDAGESYRTVADILGNSETTLRLH 255
            Y+F ++ G   P RPD    R+  ARGD  +T  H+RHF AT+MLDAGE YRTVADILGNSETTLRLH
Sbjct:  324 YVFPNRCGPDSPHRPDSFGDRFATARGDHEVTFLHLRHFTATTMLDAGEDYRTVADILGNSETTLRLH 391
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BLAST of mRNA_M-pyrifera_M_contig88398.20528.1 vs. uniprot
Match: A0A832BAG4_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A832BAG4_9ACTN)

HSP 1 Score: 81.6 bits (200), Expect = 1.740e-18
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:  103 LSKRWPMARGDSAITIAHIRHFAATSMLDAGESYRTVADILGNSETTLRLH 255
            +S RW  ARG S +T+ H+RH AAT+MLDAGESYRTV DILGNSE+TLRLH
Sbjct:    1 MSNRWAAARGTSELTLQHLRHLAATAMLDAGESYRTVTDILGNSESTLRLH 51
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88398.20528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A5C7XVG3_9MYCO5.910e-2266.18Tyr recombinase domain-containing protein n=2 Tax=... [more]
A0A7K1B251_9ACTN6.010e-2254.12Tyrosine-type recombinase/integrase n=2 Tax=root T... [more]
A0A6N7FNE4_9ACTN1.200e-2063.24Tyrosine-type recombinase/integrase n=1 Tax=Acidim... [more]
A0A832BAG4_9ACTN1.740e-1872.55Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88398contigM-pyrifera_M_contig88398:527..781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816793.673276-CDS-M-pyrifera_M_contig88398:526..7811622816793.673276-CDS-M-pyrifera_M_contig88398:526..781Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88398 527..781 -
1692278181.962074-CDS-M-pyrifera_M_contig88398:526..7811692278181.962074-CDS-M-pyrifera_M_contig88398:526..781Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88398 527..781 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88398.20528.1prot_M-pyrifera_M_contig88398.20528.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88398 527..781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88398.20528.1

>prot_M-pyrifera_M_contig88398.20528.1 ID=prot_M-pyrifera_M_contig88398.20528.1|Name=mRNA_M-pyrifera_M_contig88398.20528.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
RQKRRTLEVHAEIDRDGYLFSSQSGSGGPIRPDRLSKRWPMARGDSAITI
AHIRHFAATSMLDAGESYRTVADILGNSETTLRLH
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mRNA from alignment at M-pyrifera_M_contig88398:527..781-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88398.20528.1 ID=mRNA_M-pyrifera_M_contig88398.20528.1|Name=mRNA_M-pyrifera_M_contig88398.20528.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig88398:527..781- (Macrocystis pyrifera P11B4 male)
CGGCAGAAGCGGCGAACCCTCGAGGTCCACGCTGAGATCGATCGTGACGG
CTACCTATTCTCGAGTCAGAGCGGCAGCGGAGGGCCGATCCGGCCGGACC
GGCTGAGCAAGCGTTGGCCGATGGCCAGGGGCGACTCGGCGATCACGATC
GCTCACATCCGCCATTTCGCCGCAACTTCGATGCTTGATGCAGGCGAGTC
GTACCGCACTGTTGCGGACATCCTCGGCAACAGCGAGACAACGCTCCGGC
TTCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88398:527..781-

>mRNA_M-pyrifera_M_contig88398.20528.1 ID=mRNA_M-pyrifera_M_contig88398.20528.1|Name=mRNA_M-pyrifera_M_contig88398.20528.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig88398:527..781- (Macrocystis pyrifera P11B4 male)
CGGCAGAAGCGGCGAACCCTCGAGGTCCACGCTGAGATCGATCGTGACGG
CTACCTATTCTCGAGTCAGAGCGGCAGCGGAGGGCCGATCCGGCCGGACC
GGCTGAGCAAGCGTTGGCCGATGGCCAGGGGCGACTCGGCGATCACGATC
GCTCACATCCGCCATTTCGCCGCAACTTCGATGCTTGATGCAGGCGAGTC
GTACCGCACTGTTGCGGACATCCTCGGCAACAGCGAGACAACGCTCCGGC
TTCACCGGCAGAAGCGGCGAACCCTCGAGGTCCACGCTGAGATCGATCGT
GACGGCTACCTATTCTCGAGTCAGAGCGGCAGCGGAGGGCCGATCCGGCC
GGACCGGCTGAGCAAGCGTTGGCCGATGGCCAGGGGCGACTCGGCGATCA
CGATCGCTCACATCCGCCATTTCGCCGCAACTTCGATGCTTGATGCAGGC
GAGTCGTACCGCACTGTTGCGGACATCCTCGGCAACAGCGAGACAACGCT
CCGGCTTCAC
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