prot_M-pyrifera_M_contig88265.20499.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig88265.20499.1
Unique Nameprot_M-pyrifera_M_contig88265.20499.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length172
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88265.20499.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006597Sel1-like repeatSMARTSM00671sel1coord: 65..104
e-value: 5.9
score: 15.7
coord: 29..64
e-value: 9.4E-10
score: 48.4
coord: 3..28
e-value: 140.0
score: 3.7
coord: 141..172
e-value: 0.0021
score: 27.3
coord: 105..140
e-value: 1.1E-4
score: 31.6
IPR006597Sel1-like repeatPFAMPF08238Sel1coord: 69..104
e-value: 0.023
score: 15.4
coord: 1..28
e-value: 0.1
score: 13.3
coord: 111..140
e-value: 5.5E-4
score: 20.5
coord: 141..172
e-value: 2.5E-7
score: 31.2
coord: 31..64
e-value: 4.8E-10
score: 39.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..172
e-value: 2.9E-52
score: 179.4
NoneNo IPR availablePANTHERPTHR11102SEL-1-LIKE PROTEINcoord: 65..172
coord: 1..106
NoneNo IPR availablePANTHERPTHR11102:SF147SEL1L ERAD E3 LIGASE ADAPTOR SUBUNITcoord: 65..172
coord: 1..106
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 87..172
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 2..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88265contigM-pyrifera_M_contig88265:185..799 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88265.20499.1mRNA_M-pyrifera_M_contig88265.20499.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig88265 185..820 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig88265.20499.1 ID=prot_M-pyrifera_M_contig88265.20499.1|Name=mRNA_M-pyrifera_M_contig88265.20499.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=172bp
MYARGQAEGGEDLAKAATYYERAADLGYVIAMREIGLFYDNGTGVEQDYH
KAMAWYRKAADKDDVSAVRMIGVLYNNGEGGRGSTERDMATAVHWCEKAM
ERGDVESVRVLGSMYDSGTGVEQDYLKASQLYETAANKGSSKAMGNLAVL
YVNGEGVEQDYDKAMEWFLKAA
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006597Sel1-like
IPR011990TPR-like_helical_dom_sf