mRNA_M-pyrifera_M_contig88265.20499.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88265.20499.1
Unique NamemRNA_M-pyrifera_M_contig88265.20499.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88265.20499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88265contigM-pyrifera_M_contig88265:185..820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size537
Cds size516
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88265.20499.1prot_M-pyrifera_M_contig88265.20499.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88265 185..799 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816792.195973-CDS-M-pyrifera_M_contig88265:184..4601622816792.195973-CDS-M-pyrifera_M_contig88265:184..460Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88265 185..460 -
1692278181.0792973-CDS-M-pyrifera_M_contig88265:184..4601692278181.0792973-CDS-M-pyrifera_M_contig88265:184..460Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88265 185..460 -
1622816792.2070515-CDS-M-pyrifera_M_contig88265:559..7991622816792.2070515-CDS-M-pyrifera_M_contig88265:559..799Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88265 560..799 -
1692278181.0900366-CDS-M-pyrifera_M_contig88265:559..7991692278181.0900366-CDS-M-pyrifera_M_contig88265:559..799Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88265 560..799 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816792.2182434-UTR-M-pyrifera_M_contig88265:799..8201622816792.2182434-UTR-M-pyrifera_M_contig88265:799..820Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88265 800..820 -
1692278181.1070566-UTR-M-pyrifera_M_contig88265:799..8201692278181.1070566-UTR-M-pyrifera_M_contig88265:799..820Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88265 800..820 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88265.20499.1

>prot_M-pyrifera_M_contig88265.20499.1 ID=prot_M-pyrifera_M_contig88265.20499.1|Name=mRNA_M-pyrifera_M_contig88265.20499.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=172bp
MYARGQAEGGEDLAKAATYYERAADLGYVIAMREIGLFYDNGTGVEQDYH
KAMAWYRKAADKDDVSAVRMIGVLYNNGEGGRGSTERDMATAVHWCEKAM
ERGDVESVRVLGSMYDSGTGVEQDYLKASQLYETAANKGSSKAMGNLAVL
YVNGEGVEQDYDKAMEWFLKAA
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mRNA from alignment at M-pyrifera_M_contig88265:185..820-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88265.20499.1 ID=mRNA_M-pyrifera_M_contig88265.20499.1|Name=mRNA_M-pyrifera_M_contig88265.20499.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig88265:185..820- (Macrocystis pyrifera P11B4 male)
GCCAACTACCTGATTGGCCTCATGTACGCCCGTGGCCAGGCAGAGGGAGG
CGAGGACCTGGCGAAGGCCGCCACATACTACGAGCGCGCAGCCGATCTGG
GCTACGTCATTGCCATGAGAGAAATTGGACTCTTCTACGACAACGGCACA
GGAGTTGAGCAGGACTACCACAAGGCCATGGCCTGGTACCGCAAGGCTGC
CGACAAGGACGATGTCTCCGCAGTCAGGATGATTGGCGTTCTCTACAACA
ATGGAGAGGGCGTCGAGCGTGACTTCGACAAGGCTCGAGAGTACTTCACT
GTGGTAGCCCTCCGTGGCGACACTCTTTCCTGCCGATACCTTTGCAGCCA
CTTCATGGAGGGCCGAGGCAGCACTGAGAGGGACATGGCGACAGCCGTCC
ACTGGTGTGAGAAGGCCATGGAGAGAGGCGATGTAGAGTCTGTTCGAGTG
CTGGGATCCATGTACGACAGTGGCACCGGCGTGGAGCAAGACTACCTCAA
GGCGAGCCAGCTCTACGAGACTGCAGCGAACAAGGGCTCCAGCAAGGCCA
TGGGCAACCTGGCCGTCCTCTACGTCAACGGAGAGGGAGTTGAGCAGGAC
TACGACAAGGCCATGGAGTGGTTCCTCAAGGCTGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88265:185..820-

>mRNA_M-pyrifera_M_contig88265.20499.1 ID=mRNA_M-pyrifera_M_contig88265.20499.1|Name=mRNA_M-pyrifera_M_contig88265.20499.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1032bp|location=Sequence derived from alignment at M-pyrifera_M_contig88265:185..820- (Macrocystis pyrifera P11B4 male)
ATGTACGCCCGTGGCCAGGCAGAGGGAGGCGAGGACCTGGCGAAGGCCGC
CACATACTACGAGCGCGCAGCCGATCTGGGCTACGTCATTGCCATGAGAG
AAATTGGACTCTTCTACGACAACGGCACAGGAGTTGAGCAGGACTACCAC
AAGGCCATGGCCTGGTACCGCAAGGCTGCCGACAAGGACGATGTCTCCGC
AGTCAGGATGATTGGCGTTCTCTACAACAATGGAGAGGGCATGTACGCCC
GTGGCCAGGCAGAGGGAGGCGAGGACCTGGCGAAGGCCGCCACATACTAC
GAGCGCGCAGCCGATCTGGGCTACGTCATTGCCATGAGAGAAATTGGACT
CTTCTACGACAACGGCACAGGAGTTGAGCAGGACTACCACAAGGCCATGG
CCTGGTACCGCAAGGCTGCCGACAAGGACGATGTCTCCGCAGTCAGGATG
ATTGGCGTTCTCTACAACAATGGAGAGGGCGGCCGAGGCAGCACTGAGAG
GGACATGGCGACAGCCGTCCACTGGTGTGAGAAGGCCATGGAGAGAGGCG
ATGTAGAGTCTGTTCGAGTGCTGGGATCCATGTACGACAGTGGCACCGGC
GTGGAGCAAGACTACCTCAAGGCGAGCCAGCTCTACGAGACTGCAGCGAA
CAAGGGCTCCAGCAAGGCCATGGGCAACCTGGCCGTCCTCTACGTCAACG
GAGAGGGAGTTGAGCAGGACTACGACAAGGCCATGGAGTGGTTCCTCAAG
GCTGCCGGCCGAGGCAGCACTGAGAGGGACATGGCGACAGCCGTCCACTG
GTGTGAGAAGGCCATGGAGAGAGGCGATGTAGAGTCTGTTCGAGTGCTGG
GATCCATGTACGACAGTGGCACCGGCGTGGAGCAAGACTACCTCAAGGCG
AGCCAGCTCTACGAGACTGCAGCGAACAAGGGCTCCAGCAAGGCCATGGG
CAACCTGGCCGTCCTCTACGTCAACGGAGAGGGAGTTGAGCAGGACTACG
ACAAGGCCATGGAGTGGTTCCTCAAGGCTGCC
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