prot_M-pyrifera_M_contig8536.19895.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig8536.19895.1
Unique Nameprot_M-pyrifera_M_contig8536.19895.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length89
Homology
BLAST of mRNA_M-pyrifera_M_contig8536.19895.1 vs. uniprot
Match: D8LFV0_ECTSI (White-brown-complex ABC transporter family (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV0_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 3.960e-40
Identity = 76/89 (85.39%), Postives = 82/89 (92.13%), Query Frame = 0
Query:    1 VRKLFCSKLEGDSEAVEGVRLVRDKVTLIGKGFGYVLLADRALAAAALAVQGVKLRGRELRVMPCGKRTKGRGGKAKPGLEDHKFASFE 89
            VR+LF SKLEG  ++VEGVRLVRDK TL+GKGFGYVLLADRALAAAALA+QG KL+GR LRVMPCGKRTKGRGG AKPGLEDHKFASFE
Sbjct:  456 VRELFASKLEGGPKSVEGVRLVRDKATLVGKGFGYVLLADRALAAAALALQGTKLKGRPLRVMPCGKRTKGRGGVAKPGLEDHKFASFE 544          
BLAST of mRNA_M-pyrifera_M_contig8536.19895.1 vs. uniprot
Match: A0A6H5KDC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC0_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 6.980e-33
Identity = 66/81 (81.48%), Postives = 72/81 (88.89%), Query Frame = 0
Query:    1 VRKLFCSKLEGDSEAVEGVRLVRDKVTLIGKGFGYVLLADRALAAAALAVQGVKLRGRELRVMPCGKRTKGRGGKAKPGLE 81
            VR+LF SKLEG  ++VEGVRLVRDK TL+GKGFGYVLLADRALAAAALA+ G KL+GR LRVMPCGKRTKGRGG AKPG E
Sbjct:  442 VRELFASKLEGGPKSVEGVRLVRDKATLVGKGFGYVLLADRALAAAALALHGTKLKGRPLRVMPCGKRTKGRGGVAKPGQE 522          
BLAST of mRNA_M-pyrifera_M_contig8536.19895.1 vs. uniprot
Match: A0A397AYA5_9STRA (RRM domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AYA5_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.420e-13
Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = 0
Query:   10 EGDSEAVEGVRLVRDKVTLIGKGFGYVLLADRALAAAALAVQGVKLRGRELRVMPCGKRTKGRGGKAKPGLE 81
            + D+ AVE VR++RDKVT +GKGFGYVL  D + AA AL++ G K+  RELRV  CGKR K   G  KP L+
Sbjct:  390 DADTAAVESVRIIRDKVTHLGKGFGYVLFKDLSTAAKALSLHGSKMGKRELRVTVCGKRFKNTHGDKKPELK 461          
BLAST of mRNA_M-pyrifera_M_contig8536.19895.1 vs. uniprot
Match: A0A835YND0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YND0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.770e-13
Identity = 43/76 (56.58%), Postives = 50/76 (65.79%), Query Frame = 0
Query:    1 VRKLFCSKLEGDSEAVEGVRLVRDKVTLIGKGFGYVLLADRALAAAALAVQGVKLRGRELRVMPCGKRTKG-RGGK 75
            VR  F    E  + A+EGVRL+RD  T +GKGFGYVL  D A   AAL + G  LR RELRV  CG+RTKG RGG+
Sbjct:  308 VRAHFSEISEDGTAAIEGVRLIRDPDTQLGKGFGYVLFRDAATVGAALRLDGSALRKRELRVHVCGRRTKGGRGGR 383          
BLAST of mRNA_M-pyrifera_M_contig8536.19895.1 vs. uniprot
Match: A0A5D6YDX4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDX4_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.860e-13
Identity = 42/74 (56.76%), Postives = 48/74 (64.86%), Query Frame = 0
Query:    1 VRKLFCSKLEGDSEA--VEGVRLVRDKVTLIGKGFGYVLLADRALAAAALAVQGVKLRGRELRVMPCGKRTKGR 72
            VR+ F  +L  D E   V  VRL+RD+ T +GKGFGYVLL   ALA  ALA+   KL GRELRV  CGKR K R
Sbjct:  284 VRRFFEQRLASDEEPQPVVNVRLIRDRATGVGKGFGYVLLRSAALAGQALALHESKLEGRELRVQVCGKRFKSR 357          
BLAST of mRNA_M-pyrifera_M_contig8536.19895.1 vs. uniprot
Match: A0A8K1FPN5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FPN5_PYTOL)

HSP 1 Score: 71.6 bits (174), Expect = 1.200e-12
Identity = 44/77 (57.14%), Postives = 53/77 (68.83%), Query Frame = 0
Query:    5 FCSKLEGDSEA--VEGVRLVRDKVTLIGKGFGYVLLADRALAAAALAVQGVKLRGRELRVMPCGKR---TKGRGGKA 76
            F  +L+ D E   VE VR++RD+ T  GKGFGYVLL  +ALAA AL++QG KL  RELRV  CGKR   TKG G K+
Sbjct:  279 FDKQLKSDEEPAPVENVRVIRDRDTGEGKGFGYVLLKSKALAAKALSLQGKKLEQRELRVQVCGKRFKNTKGSGSKS 355          
BLAST of mRNA_M-pyrifera_M_contig8536.19895.1 vs. uniprot
Match: A0A485LPI4_9STRA (Aste57867_24108 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LPI4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.240e-12
Identity = 44/79 (55.70%), Postives = 51/79 (64.56%), Query Frame = 0
Query:    1 VRKLFCSKLEG--DSEAVEGVRLVRDKVTLIGKGFGYVLLADRALAAAALAVQGVKLRGRELRVMPCGKRTKGRGGKAK 77
            VRK F   L    D+  VE VRL+RDK T +GKGFGYVLL D + AA ALA+ G K+  RELRV  CGKR K   G+ K
Sbjct:  275 VRKHFEKALRDGDDTPVVESVRLIRDKTTHLGKGFGYVLLRDVSTAAKALALNGQKMGKRELRVTVCGKRFKNTQGEKK 353          
BLAST of mRNA_M-pyrifera_M_contig8536.19895.1 vs. uniprot
Match: W7U9S2_9STRA (Rna binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U9S2_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.320e-12
Identity = 37/68 (54.41%), Postives = 45/68 (66.18%), Query Frame = 0
Query:    1 VRKLFCSKLEGDSEAVEGVRLVRDKVTLIGKGFGYVLLADRALAAAALAVQGVKLRGRELRVMPCGKR 68
            +R     +LEG    VEGVRLVRD  T  GKGFG+VLL D+A  AAAL + G   +GR++RV  CGKR
Sbjct:  336 IRAHVAQELEGGPGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKR 403          
BLAST of mRNA_M-pyrifera_M_contig8536.19895.1 vs. uniprot
Match: A0A662WLY5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WLY5_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 8.060e-12
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 0
Query:    8 KLEGDSEAVEGVRLVRDKVTLIGKGFGYVLLADRALAAAALAVQGVKLRGRELRVMPCGKRTKGRGG 74
            K E + + VE VRL+RD+ + +GKGFGY+LL + +LAA ALA++  K+  RELRVM CGKR K + G
Sbjct:  313 KTEDEPQPVENVRLIRDRESGLGKGFGYILLKNPSLAAKALALRETKMETRELRVMVCGKRFKNKRG 379          
BLAST of mRNA_M-pyrifera_M_contig8536.19895.1 vs. uniprot
Match: A0A024TR24_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TR24_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 8.080e-12
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 0
Query:   10 EGDSEAVEGVRLVRDKVTLIGKGFGYVLLADRALAAAALAVQGVKLRGRELRVMPCGKRTKGRGGKAKPGLE 81
            + D+ AVE VR++RDK T +GKGFGYVL  D + AA AL++   K+  RE+RV  CGKR K  GG+  P L+
Sbjct:  316 DADTPAVESVRIIRDKSTHLGKGFGYVLFKDVSTAAKALSLHESKMGKREIRVTVCGKRFKNTGGEKAPELK 387          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8536.19895.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFV0_ECTSI3.960e-4085.39White-brown-complex ABC transporter family (Partia... [more]
A0A6H5KDC0_9PHAE6.980e-3381.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A397AYA5_9STRA1.420e-1355.56RRM domain-containing protein n=8 Tax=Aphanomyces ... [more]
A0A835YND0_9STRA1.770e-1356.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5D6YDX4_9STRA4.860e-1356.76Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8K1FPN5_PYTOL1.200e-1257.14Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485LPI4_9STRA1.240e-1255.70Aste57867_24108 protein n=1 Tax=Aphanomyces stella... [more]
W7U9S2_9STRA4.320e-1254.41Rna binding protein n=1 Tax=Nannochloropsis gadita... [more]
A0A662WLY5_9STRA8.060e-1253.73Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A024TR24_9STRA8.080e-1251.39Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 15..61
e-value: 2.2E-4
score: 21.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..62
score: 9.337
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..75
e-value: 5.2E-10
score: 41.4
NoneNo IPR availablePANTHERPTHR23236:SF25RNA-BINDING PROTEIN 34coord: 1..72
NoneNo IPR availablePANTHERPTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4Hcoord: 1..72
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 15..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8536contigM-pyrifera_M_contig8536:9116..11919 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8536.19895.1mRNA_M-pyrifera_M_contig8536.19895.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig8536 9116..11919 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig8536.19895.1 ID=prot_M-pyrifera_M_contig8536.19895.1|Name=mRNA_M-pyrifera_M_contig8536.19895.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
VRKLFCSKLEGDSEAVEGVRLVRDKVTLIGKGFGYVLLADRALAAAALAV
QGVKLRGRELRVMPCGKRTKGRGGKAKPGLEDHKFASFE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf