mRNA_M-pyrifera_M_contig8536.19895.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8536.19895.1
Unique NamemRNA_M-pyrifera_M_contig8536.19895.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8536.19895.1 vs. uniprot
Match: D8LFV0_ECTSI (White-brown-complex ABC transporter family (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV0_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 3.960e-40
Identity = 76/89 (85.39%), Postives = 82/89 (92.13%), Query Frame = 1 
Query:    1 VRKLFCSKLEGDSEAVEGVRLVRDKVTLIGKGFGYVLLADRALAAAALAVQGVKLRGRELRVMPCGKRTKGRGGKAKPGLEDHKFASFE 267
            VR+LF SKLEG  ++VEGVRLVRDK TL+GKGFGYVLLADRALAAAALA+QG KL+GR LRVMPCGKRTKGRGG AKPGLEDHKFASFE
Sbjct:  456 VRELFASKLEGGPKSVEGVRLVRDKATLVGKGFGYVLLADRALAAAALALQGTKLKGRPLRVMPCGKRTKGRGGVAKPGLEDHKFASFE 544
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BLAST of mRNA_M-pyrifera_M_contig8536.19895.1 vs. uniprot
Match: A0A6H5KDC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC0_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 6.980e-33
Identity = 66/81 (81.48%), Postives = 72/81 (88.89%), Query Frame = 1 
Query:    1 VRKLFCSKLEGDSEAVEGVRLVRDKVTLIGKGFGYVLLADRALAAAALAVQGVKLRGRELRVMPCGKRTKGRGGKAKPGLE 243
            VR+LF SKLEG  ++VEGVRLVRDK TL+GKGFGYVLLADRALAAAALA+ G KL+GR LRVMPCGKRTKGRGG AKPG E
Sbjct:  442 VRELFASKLEGGPKSVEGVRLVRDKATLVGKGFGYVLLADRALAAAALALHGTKLKGRPLRVMPCGKRTKGRGGVAKPGQE 522
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BLAST of mRNA_M-pyrifera_M_contig8536.19895.1 vs. uniprot
Match: A0A397AYA5_9STRA (RRM domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AYA5_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.420e-13
Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   28 EGDSEAVEGVRLVRDKVTLIGKGFGYVLLADRALAAAALAVQGVKLRGRELRVMPCGKRTKGRGGKAKPGLE 243
            + D+ AVE VR++RDKVT +GKGFGYVL  D + AA AL++ G K+  RELRV  CGKR K   G  KP L+
Sbjct:  390 DADTAAVESVRIIRDKVTHLGKGFGYVLFKDLSTAAKALSLHGSKMGKRELRVTVCGKRFKNTHGDKKPELK 461
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BLAST of mRNA_M-pyrifera_M_contig8536.19895.1 vs. uniprot
Match: A0A835YND0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YND0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.770e-13
Identity = 43/76 (56.58%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    1 VRKLFCSKLEGDSEAVEGVRLVRDKVTLIGKGFGYVLLADRALAAAALAVQGVKLRGRELRVMPCGKRTKG-RGGK 225
            VR  F    E  + A+EGVRL+RD  T +GKGFGYVL  D A   AAL + G  LR RELRV  CG+RTKG RGG+
Sbjct:  308 VRAHFSEISEDGTAAIEGVRLIRDPDTQLGKGFGYVLFRDAATVGAALRLDGSALRKRELRVHVCGRRTKGGRGGR 383
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BLAST of mRNA_M-pyrifera_M_contig8536.19895.1 vs. uniprot
Match: A0A5D6YDX4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDX4_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.860e-13
Identity = 42/74 (56.76%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    1 VRKLFCSKLEGDSEA--VEGVRLVRDKVTLIGKGFGYVLLADRALAAAALAVQGVKLRGRELRVMPCGKRTKGR 216
            VR+ F  +L  D E   V  VRL+RD+ T +GKGFGYVLL   ALA  ALA+   KL GRELRV  CGKR K R
Sbjct:  284 VRRFFEQRLASDEEPQPVVNVRLIRDRATGVGKGFGYVLLRSAALAGQALALHESKLEGRELRVQVCGKRFKSR 357
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BLAST of mRNA_M-pyrifera_M_contig8536.19895.1 vs. uniprot
Match: A0A8K1FPN5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FPN5_PYTOL)

HSP 1 Score: 71.6 bits (174), Expect = 1.200e-12
Identity = 44/77 (57.14%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:   13 FCSKLEGDSEA--VEGVRLVRDKVTLIGKGFGYVLLADRALAAAALAVQGVKLRGRELRVMPCGKR---TKGRGGKA 228
            F  +L+ D E   VE VR++RD+ T  GKGFGYVLL  +ALAA AL++QG KL  RELRV  CGKR   TKG G K+
Sbjct:  279 FDKQLKSDEEPAPVENVRVIRDRDTGEGKGFGYVLLKSKALAAKALSLQGKKLEQRELRVQVCGKRFKNTKGSGSKS 355
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BLAST of mRNA_M-pyrifera_M_contig8536.19895.1 vs. uniprot
Match: A0A485LPI4_9STRA (Aste57867_24108 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LPI4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.240e-12
Identity = 44/79 (55.70%), Postives = 51/79 (64.56%), Query Frame = 1 
Query:    1 VRKLFCSKLEG--DSEAVEGVRLVRDKVTLIGKGFGYVLLADRALAAAALAVQGVKLRGRELRVMPCGKRTKGRGGKAK 231
            VRK F   L    D+  VE VRL+RDK T +GKGFGYVLL D + AA ALA+ G K+  RELRV  CGKR K   G+ K
Sbjct:  275 VRKHFEKALRDGDDTPVVESVRLIRDKTTHLGKGFGYVLLRDVSTAAKALALNGQKMGKRELRVTVCGKRFKNTQGEKK 353
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BLAST of mRNA_M-pyrifera_M_contig8536.19895.1 vs. uniprot
Match: W7U9S2_9STRA (Rna binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U9S2_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.320e-12
Identity = 37/68 (54.41%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:    1 VRKLFCSKLEGDSEAVEGVRLVRDKVTLIGKGFGYVLLADRALAAAALAVQGVKLRGRELRVMPCGKR 204
            +R     +LEG    VEGVRLVRD  T  GKGFG+VLL D+A  AAAL + G   +GR++RV  CGKR
Sbjct:  336 IRAHVAQELEGGPGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKR 403
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BLAST of mRNA_M-pyrifera_M_contig8536.19895.1 vs. uniprot
Match: A0A662WLY5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WLY5_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 8.060e-12
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:   22 KLEGDSEAVEGVRLVRDKVTLIGKGFGYVLLADRALAAAALAVQGVKLRGRELRVMPCGKRTKGRGG 222
            K E + + VE VRL+RD+ + +GKGFGY+LL + +LAA ALA++  K+  RELRVM CGKR K + G
Sbjct:  313 KTEDEPQPVENVRLIRDRESGLGKGFGYILLKNPSLAAKALALRETKMETRELRVMVCGKRFKNKRG 379
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BLAST of mRNA_M-pyrifera_M_contig8536.19895.1 vs. uniprot
Match: A0A024TR24_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TR24_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 8.080e-12
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:   28 EGDSEAVEGVRLVRDKVTLIGKGFGYVLLADRALAAAALAVQGVKLRGRELRVMPCGKRTKGRGGKAKPGLE 243
            + D+ AVE VR++RDK T +GKGFGYVL  D + AA AL++   K+  RE+RV  CGKR K  GG+  P L+
Sbjct:  316 DADTPAVESVRIIRDKSTHLGKGFGYVLFKDVSTAAKALSLHESKMGKREIRVTVCGKRFKNTGGEKAPELK 387
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8536.19895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFV0_ECTSI3.960e-4085.39White-brown-complex ABC transporter family (Partia... [more]
A0A6H5KDC0_9PHAE6.980e-3381.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A397AYA5_9STRA1.420e-1355.56RRM domain-containing protein n=8 Tax=Aphanomyces ... [more]
A0A835YND0_9STRA1.770e-1356.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5D6YDX4_9STRA4.860e-1356.76Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8K1FPN5_PYTOL1.200e-1257.14Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485LPI4_9STRA1.240e-1255.70Aste57867_24108 protein n=1 Tax=Aphanomyces stella... [more]
W7U9S2_9STRA4.320e-1254.41Rna binding protein n=1 Tax=Nannochloropsis gadita... [more]
A0A662WLY5_9STRA8.060e-1253.73Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A024TR24_9STRA8.080e-1251.39Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8536contigM-pyrifera_M_contig8536:9116..11919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.8
Seed ortholog evalue1.6e-34
Seed eggNOG ortholog2880.D8LFV0
Preferred namemyef2
KEGG koko:K05679,ko:K05681
KEGG TC3.A.1.204
KEGG Pathwayko01523,ko02010,ko04976,map01523,map02010,map04976
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0097159,GO:1901363
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0061@2759,KOG0118@1,KOG0118@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Exons3
Model size267
Cds size267
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8536.19895.1prot_M-pyrifera_M_contig8536.19895.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8536 9116..11919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816762.3286784-CDS-M-pyrifera_M_contig8536:9115..92531622816762.3286784-CDS-M-pyrifera_M_contig8536:9115..9253Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8536 9116..9253 +
1692278163.455779-CDS-M-pyrifera_M_contig8536:9115..92531692278163.455779-CDS-M-pyrifera_M_contig8536:9115..9253Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8536 9116..9253 +
1622816762.33983-CDS-M-pyrifera_M_contig8536:11280..113851622816762.33983-CDS-M-pyrifera_M_contig8536:11280..11385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8536 11281..11385 +
1692278163.4756641-CDS-M-pyrifera_M_contig8536:11280..113851692278163.4756641-CDS-M-pyrifera_M_contig8536:11280..11385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8536 11281..11385 +
1622816762.3510077-CDS-M-pyrifera_M_contig8536:11895..119191622816762.3510077-CDS-M-pyrifera_M_contig8536:11895..11919Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8536 11896..11919 +
1692278163.4872038-CDS-M-pyrifera_M_contig8536:11895..119191692278163.4872038-CDS-M-pyrifera_M_contig8536:11895..11919Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8536 11896..11919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8536.19895.1

>prot_M-pyrifera_M_contig8536.19895.1 ID=prot_M-pyrifera_M_contig8536.19895.1|Name=mRNA_M-pyrifera_M_contig8536.19895.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
VRKLFCSKLEGDSEAVEGVRLVRDKVTLIGKGFGYVLLADRALAAAALAV
QGVKLRGRELRVMPCGKRTKGRGGKAKPGLEDHKFASFE
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mRNA from alignment at M-pyrifera_M_contig8536:9116..11919+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8536.19895.1 ID=mRNA_M-pyrifera_M_contig8536.19895.1|Name=mRNA_M-pyrifera_M_contig8536.19895.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2804bp|location=Sequence derived from alignment at M-pyrifera_M_contig8536:9116..11919+ (Macrocystis pyrifera P11B4 male)
GTACGAAAGCTGTTTTGCTCTAAGCTGGAAGGCGATAGCGAGGCGGTGGA
GGGGGTCCGCCTGGTTCGGGACAAGGTCACCCTCATTGGCAAGGGCTTCG
GCTATGTTCTTCTCGCAGACAGGGCATTGGCCGCCGCGGTGAGTGATGGA
TTGATTTGATTGGTTGTGATTGGTTGATCAGTCGGTTGGTTTGTCTGGTT
GGTTGTGATTGGCTGGTTGATTTAGTCGGTTGGTTGATGGTTTGGTTGGT
TGATTGGTTGGTTGGTTGGTTGGTTGATTATCCCGTGTGGATGGATTTTT
ACGTGTTGTGTGATTGATGCGTTGGTTCATTATTTCATTGGTTCACGCTC
CATTGGGTTCATCGAACGACTGCTTCATCATTACTTGCCTTGTCTCGCCT
AACCTATTAATAGCTATTACGGGGGGCCATAGTGTATGCGACCAAATATT
GTTGGTGAAAAGAGCGATATATGTGTGTACCGTAGGTCCTATTTGCTCTG
GCCCCCTGCAATCTATCCCCTGGACAGGGGTGGTGCAGTTGTAACCAAAT
CGCTCACTTGGTATATATATATACTCACTATTACGGGGAACCATAGTAAA
TAGGACCAAATATTGTTCGTAAAAATATGGGAATATATGGGTGTTTGTGC
ATACCGTGGGTCCTTTTAACTGTGGTCCCCCGTAATAGCGGTCACTACCA
AGTAGAAGGACCGTTTTCATATTACTGTAGTATTCAACTATATATAGCGC
TCGATAATTTTTAGGACAGTGGCATATTCTGAGGGGCATATTCTGAGGGT
GTGTTTTGTAGAGTACAGGCATATGCTCTGGGGTGTCAGTCTACCAAAGC
TTGTGTTTCGATCATACCCGGGTAAATACTCAGGTACCCGGCAGAGTATG
TACCCGGGTACCCTCAGAGTATATAAATACCCGGGTACCCTCAGAGTATT
TATATACCCGGATACCTCCAGAGTGTATATACCCCCCCACAGTATATACC
CGGATACCTCCAAAGTACACATGCCCGGGTATCCCCAGAGTATATATATG
CCCGGGTATCCCCAGAGTAAATTTATCCTTCTAAACCCACCGTTGCTCTT
TTCCTTCCCAGCTGTGATCCATGGTAGTTTGCCAGGTATGATGGCTTGCC
CCTATAATTGGCGCTGTGCCCCGTTTAGACACAAGGTAAGGCAGAGTTGC
ACCAACTCTTTTCTGAGGTTCCTCGCTCGACCTTAAGGAGCTCTACGCCT
CACCCTAAAAAAGTGCAATGGTTGATGAAAAACTTGAAAGTGCAATGGTT
GTACCAAACACTTAGATCCCCCCCTCAAAAAAAAAAAGCGTTCCGACGAT
TTTAGGTTGACGGTGATGATGAGCCCTGTCGTTCAGAACAAAAAAAAAAA
TGTTGGCCAAAAAGTGATACCCCTATCTTTGTATGATCGCATGCGTCTTC
ACACCGCCACGAAGTCGAGCCAAGCTTTGGGGGGAAAACTACAGTATGTG
GATTAGGAGTTGAATCGCCGAAATATGCACACGCATCGGACACGATGTAC
TGTGCGTAGATGGCCTAGATCCCGTATTTTCATGGTTTCCGTCACGAGGA
GGGTCTCGCAGGATATATGTTTTGTACACAGATTCAGCCGGGGAGGGGAC
ATGGCGCTGGACCTTTCAGATCATGCAGCTCCCAATAGATAACACGAGTA
CTGGTATGTATTATGGATCATACGGATTGAGAGTGTGTCTACCCGGAAGG
ATCTAGATCATGGAAGTGGGGAATCGAGATGATCTTATCAATATTTCTGT
GTGATGTGTGGGTGTAATTTATGAGGACCTCTTGGTATTCATATTATTTT
CTAAGAACGTTCCTTATAAATTTCCGCCCGGGGTTGTGTGTCTGACTGAA
CGCGTATCATACATGCATTGGTGGGAAACCTTTCGAACCTCGCGGGATGT
CAGGCATCAGATGAGCTGAGTAGTTGGTTGGGAATGGTTGACGAATTGAT
CGATAGACTGGGTTGTTCTGGCTGAGTGGTTCATGTTTTTTTTTTTTTTG
GTTGATCGGTCGCTTGGTTCGTTTCAACAATAGGATCTGAATCGCAGTTT
TTTTTTTGTTTCCCTGGCTGAACGCTTATCATACATTTCGGGACCTTCGA
ATCGCGCGACGTCAGGCGCTGGCCGTTCAGGGCGTTAAGCTGAGAGGGCG
AGAGCTCCGCGTCATGCCGTGCGGCAAGCGGACCAAGGGGAGGGGTGGCA
AGGCTAAGCCGGGGCTGGAGGTACGCGTGTTTTGATGTTTTGTGGTTGTG
CTAGTGGTCGGTGGTAGTGGTGGTGGTGGTGGTGGTGTAGTTGTTGTTAT
ATCGAGGGTTGTTTTGGTGGTGGTGGTGGTGGTGGTGGTAGCGGTTGTAG
TGTTGGTGGTGTTGGTAGTGGTGGTCATGTTGGTAATGGTTGTGGTATTT
GTGTTGGTGTTGGTGATGGTTGTGGTGGTTGTGTCGGTGCTGATGGTGCT
AGTGTTGTTGTGGTCGTGGTGCTGGTGTTGGTGATGTTGATGCTGTTGTT
GCCGTCGCTACATATCGTTGCTATTACGGAGGACCATAGTAAATAGGACC
TACGGTACACACAAAAACCTATATATTTCCCTATTTTTACTAACAAAATT
TGGTCCCATTTACTATGGTCCCCCGTAATATTGTTTTTCACCTGTTGTCC
GTCACCCCACCCCCACCCTCACCCTCAACCCTGACCTCAACCCCACCCCC
AACCCCACCCCCCCGCATGCGTTGCTGCAGGACCACAAATTCGCAAGTTT
CGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8536:9116..11919+

>mRNA_M-pyrifera_M_contig8536.19895.1 ID=mRNA_M-pyrifera_M_contig8536.19895.1|Name=mRNA_M-pyrifera_M_contig8536.19895.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig8536:9116..11919+ (Macrocystis pyrifera P11B4 male)
GTACGAAAGCTGTTTTGCTCTAAGCTGGAAGGCGATAGCGAGGCGGTGGA
GGGGGTCCGCCTGGTTCGGGACAAGGTCACCCTCATTGGCAAGGGCTTCG
GCTATGTTCTTCTCGCAGACAGGGCATTGGCCGCCGCGGTACGAAAGCTG
TTTTGCTCTAAGCTGGAAGGCGATAGCGAGGCGGTGGAGGGGGTCCGCCT
GGTTCGGGACAAGGTCACCCTCATTGGCAAGGGCTTCGGCTATGTTCTTC
TCGCAGACAGGGCATTGGCCGCCGCGGCGCTGGCCGTTCAGGGCGTTAAG
CTGAGAGGGCGAGAGCTCCGCGTCATGCCGTGCGGCAAGCGGACCAAGGG
GAGGGGTGGCAAGGCTAAGCCGGGGCTGGAGGCGCTGGCCGTTCAGGGCG
TTAAGCTGAGAGGGCGAGAGCTCCGCGTCATGCCGTGCGGCAAGCGGACC
AAGGGGAGGGGTGGCAAGGCTAAGCCGGGGCTGGAGGACCACAAATTCGC
AAGTTTCGAGGACCACAAATTCGCAAGTTTCGAG
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