prot_M-pyrifera_M_contig84489.19698.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig84489.19698.1
Unique Name	prot_M-pyrifera_M_contig84489.19698.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	178

Homology

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BLAST of mRNA_M-pyrifera_M_contig84489.19698.1 vs. uniprot
Match: A0A6A7GA59_9CRUS (Methyl-accepting chemotaxis protein McpC (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GA59_9CRUS)

HSP 1 Score: 63.5 bits (153), Expect = 1.540e-8
Identity = 39/124 (31.45%), Postives = 63/124 (50.81%), Query Frame = 0

Query:    1 MNDFEMGLVDAAVRAQVLQNGYGFLVGQDGRCVVHPSLDWSTASEAPSAVSLEYPDASTPSDPLQEPSSSLPSTFFEKVQEPMVAGEKGTARVVKEDGSKWIYAWNPVPSASYSLAITVPVSDV 124
            ++ F+  + D ++    L NGYGF++ QDG  V+HP  D+S A    S + LE+              SS     F+ + + M+   +G     K DG+KW  ++ PV +A +SLA+ VP  D+
Sbjct:  179 LSSFKTAVADFSI----LDNGYGFVISQDGNVVIHPDFDYSNAI---SFLDLEF-------------DSSADKDGFQHILDEMINEGEGDDNFQK-DGAKWFISYAPVKAAGFSLALVVPEEDI 281

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig84489.19698.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig84489.19698.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6A7GA59_9CRUS	1.540e-8	31.45	Methyl-accepting chemotaxis protein McpC (Fragment...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.450.20		coord: 7..136 e-value: 7.4E-14 score: 53.7
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..137
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 138..158
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 159..178
None	No IPR available	TMHMM	TMhelix		coord: 137..159

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig84489	contig	M-pyrifera_M_contig84489:91..624 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig84489.19698.1	mRNA_M-pyrifera_M_contig84489.19698.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig84489 91..651 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig84489.19698.1 ID=prot_M-pyrifera_M_contig84489.19698.1|Name=mRNA_M-pyrifera_M_contig84489.19698.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=178bp
MNDFEMGLVDAAVRAQVLQNGYGFLVGQDGRCVVHPSLDWSTASEAPSAV
SLEYPDASTPSDPLQEPSSSLPSTFFEKVQEPMVAGEKGTARVVKEDGSK
WIYAWNPVPSASYSLAITVPVSDVREPFVTTQATLRTIQIAALCVGAAAV
LVGAYVAWRRTQSVAASITTPIRTLNSI