mRNA_M-pyrifera_M_contig84489.19698.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84489.19698.1
Unique NamemRNA_M-pyrifera_M_contig84489.19698.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84489.19698.1 vs. uniprot
Match: A0A6A7GA59_9CRUS (Methyl-accepting chemotaxis protein McpC (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GA59_9CRUS)

HSP 1 Score: 67.8 bits (164), Expect = 6.750e-10
Identity = 46/135 (34.07%), Postives = 68/135 (50.37%), Query Frame = 1 
Query:    4 DPA--LVGVVMNDFEMGLVDAAVRA-QVLQNGYGFLVGQDGRCVVHPSLDWSTASEAPSAVSLEYPDASTPSDPLQEPSSSLPSTFFEKVQEPMVAGEKGTARVVKEDGSKWIYAWNPVPSASYSLAITVPVSDV 399
            DP+  LVGV+  D  +     AV    +L NGYGF++ QDG  V+HP  D+S A    S + LE+              SS     F+ + + M+   +G     K DG+KW  ++ PV +A +SLA+ VP  D+
Sbjct:  164 DPSGNLVGVIGLDLALSSFKTAVADFSILDNGYGFVISQDGNVVIHPDFDYSNAI---SFLDLEF-------------DSSADKDGFQHILDEMINEGEGDDNFQK-DGAKWFISYAPVKAAGFSLALVVPEEDI 281
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BLAST of mRNA_M-pyrifera_M_contig84489.19698.1 vs. uniprot
Match: A0A842RGP3_9ARCH (Tetratricopeptide repeat protein n=1 Tax=Candidatus Heimdallarchaeota archaeon TaxID=2026747 RepID=A0A842RGP3_9ARCH)

HSP 1 Score: 53.9 bits (128), Expect = 3.900e-5
Identity = 39/147 (26.53%), Postives = 65/147 (44.22%), Query Frame = 1 
Query:   13 LVGVVMNDFEMGLVDAAV-RAQVLQNGYGFLVGQDGRCVVHPSLDWSTASEAPSAVSLEYPDASTPSDPLQEPSSSLPSTFFEKVQEPMVAGEKGTARVVKEDGS-KWIYAWNPVPSASYSLAITVPVSDVREPFVTTQATLRTIQI 447
            L+GV+  D  +  +  A+    VL+ GY FL+   G+ + HP +        P  +  +Y +A    + + E   +     F    + M  GE G A  +K DG  KW   + P+    YS+ I VP  D+  P    +  ++T+ I
Sbjct:  266 LIGVISMDLTIDTIRTAIMNIDVLEEGYAFLIDNQGKTISHPDI--------PEPIPSDY-EAEDIEEMVFEVGDNSDRAAFRTAVQLMKDGEYGQATFLKNDGEEKWFIVFAPIAITGYSMGIIVPEKDLIAPANAVKDQIQTLSI 403
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84489.19698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6A7GA59_9CRUS6.750e-1034.07Methyl-accepting chemotaxis protein McpC (Fragment... [more]
A0A842RGP3_9ARCH3.900e-526.53Tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84489contigM-pyrifera_M_contig84489:91..651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size561
Cds size534
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816752.273343-CDS-M-pyrifera_M_contig84489:90..6241622816752.273343-CDS-M-pyrifera_M_contig84489:90..624Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84489 91..624 -
1692278157.393402-CDS-M-pyrifera_M_contig84489:90..6241692278157.393402-CDS-M-pyrifera_M_contig84489:90..624Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84489 91..624 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816752.2845044-UTR-M-pyrifera_M_contig84489:624..6511622816752.2845044-UTR-M-pyrifera_M_contig84489:624..651Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84489 625..651 -
1692278157.405104-UTR-M-pyrifera_M_contig84489:624..6511692278157.405104-UTR-M-pyrifera_M_contig84489:624..651Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84489 625..651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84489.19698.1prot_M-pyrifera_M_contig84489.19698.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84489 91..624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84489.19698.1

>prot_M-pyrifera_M_contig84489.19698.1 ID=prot_M-pyrifera_M_contig84489.19698.1|Name=mRNA_M-pyrifera_M_contig84489.19698.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=178bp
MNDFEMGLVDAAVRAQVLQNGYGFLVGQDGRCVVHPSLDWSTASEAPSAV
SLEYPDASTPSDPLQEPSSSLPSTFFEKVQEPMVAGEKGTARVVKEDGSK
WIYAWNPVPSASYSLAITVPVSDVREPFVTTQATLRTIQIAALCVGAAAV
LVGAYVAWRRTQSVAASITTPIRTLNSI
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mRNA from alignment at M-pyrifera_M_contig84489:91..651-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84489.19698.1 ID=mRNA_M-pyrifera_M_contig84489.19698.1|Name=mRNA_M-pyrifera_M_contig84489.19698.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=561bp|location=Sequence derived from alignment at M-pyrifera_M_contig84489:91..651- (Macrocystis pyrifera P11B4 male)
GAGGACCCTGCGCTGGTCGGGGTGGTGATGAACGACTTCGAGATGGGGTT
GGTGGACGCTGCAGTGCGAGCGCAGGTGCTGCAAAACGGCTACGGGTTTC
TCGTGGGTCAAGATGGCCGTTGTGTGGTGCACCCTTCCCTTGACTGGAGC
ACAGCCTCCGAAGCGCCATCTGCCGTATCCTTAGAATACCCCGACGCCTC
CACGCCTTCGGATCCGTTGCAAGAACCGTCTTCATCGCTTCCCTCGACGT
TTTTCGAAAAAGTGCAAGAGCCCATGGTTGCAGGGGAAAAAGGGACGGCA
CGGGTGGTGAAGGAAGACGGCAGCAAGTGGATCTACGCGTGGAACCCAGT
GCCATCTGCCTCCTACTCGCTGGCCATCACCGTCCCGGTGAGCGACGTGA
GGGAACCCTTTGTCACCACCCAAGCCACGCTGCGCACCATTCAAATCGCG
GCACTCTGCGTGGGAGCAGCTGCCGTTCTGGTCGGCGCTTACGTGGCTTG
GCGCAGGACGCAATCCGTCGCCGCCTCCATCACGACTCCGATCCGAACGC
TCAACAGCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84489:91..651-

>mRNA_M-pyrifera_M_contig84489.19698.1 ID=mRNA_M-pyrifera_M_contig84489.19698.1|Name=mRNA_M-pyrifera_M_contig84489.19698.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1068bp|location=Sequence derived from alignment at M-pyrifera_M_contig84489:91..651- (Macrocystis pyrifera P11B4 male)
ATGAACGACTTCGAGATGGGGTTGGTGGACGCTGCAGTGCGAGCGCAGGT
GCTGCAAAACGGCTACGGGTTTCTCGTGGGTCAAGATGGCCGTTGTGTGG
TGCACCCTTCCCTTGACTGGAGCACAGCCTCCGAAGCGCCATCTGCCGTA
TCCTTAGAATACCCCGACGCCTCCACGCCTTCGGATCCGTTGCAAGAACC
GTCTTCATCGCTTCCCTCGACGTTTTTCGAAAAAGTGCAAGAGCCCATGG
TTGCAGGGGAAAAAGGGACGGCACGGGTGGTGAAGGAAGACGGCAGCAAG
TGGATCTACGCGTGGAACCCAGTGCCATCTGCCTCCTACTCGCTGGCCAT
CACCGTCCCGGTGAGCGACGTGAGGGAACCCTTTGTCACCACCCAAGCCA
CGCTGCGCACCATTCAAATCGCGGCACTCTGCGTGGGAGCAGCTGCCGTT
CTGGTCGGCGCTTACGTGGCTTGGCGCAGGACGCAATCCGTCGCCGCCTC
CATCACGACTCCGATCCGAACGCTCAACAGCATCATGAACGACTTCGAGA
TGGGGTTGGTGGACGCTGCAGTGCGAGCGCAGGTGCTGCAAAACGGCTAC
GGGTTTCTCGTGGGTCAAGATGGCCGTTGTGTGGTGCACCCTTCCCTTGA
CTGGAGCACAGCCTCCGAAGCGCCATCTGCCGTATCCTTAGAATACCCCG
ACGCCTCCACGCCTTCGGATCCGTTGCAAGAACCGTCTTCATCGCTTCCC
TCGACGTTTTTCGAAAAAGTGCAAGAGCCCATGGTTGCAGGGGAAAAAGG
GACGGCACGGGTGGTGAAGGAAGACGGCAGCAAGTGGATCTACGCGTGGA
ACCCAGTGCCATCTGCCTCCTACTCGCTGGCCATCACCGTCCCGGTGAGC
GACGTGAGGGAACCCTTTGTCACCACCCAAGCCACGCTGCGCACCATTCA
AATCGCGGCACTCTGCGTGGGAGCAGCTGCCGTTCTGGTCGGCGCTTACG
TGGCTTGGCGCAGGACGCAATCCGTCGCCGCCTCCATCACGACTCCGATC
CGAACGCTCAACAGCATC
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