prot_M-pyrifera_M_contig84351.19672.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig84351.19672.1
Unique Nameprot_M-pyrifera_M_contig84351.19672.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length41
Homology
BLAST of mRNA_M-pyrifera_M_contig84351.19672.1 vs. uniprot
Match: A0A7S2RDD0_9STRA (Histone H2B n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RDD0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.090e-16
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 0
Query:    1 KKRVETYSTYIYRVLKQVHPNVGISKSGMSVMNSFINDLFE 41
            KKRVE+YSTYIY+VLKQVHP+ GISK GMS+MNSFIND+FE
Sbjct:   25 KKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFE 65          
BLAST of mRNA_M-pyrifera_M_contig84351.19672.1 vs. uniprot
Match: A0A7S4ACZ1_9STRA (Histone H2B n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ACZ1_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.120e-16
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 0
Query:    1 KKRVETYSTYIYRVLKQVHPNVGISKSGMSVMNSFINDLFE 41
            KKRVE+YSTYIY+VLKQVHP+ GISK GMS+MNSFIND+FE
Sbjct:   26 KKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFE 66          
BLAST of mRNA_M-pyrifera_M_contig84351.19672.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 75.9 bits (185), Expect = 1.150e-16
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 0
Query:    1 KKRVETYSTYIYRVLKQVHPNVGISKSGMSVMNSFINDLFE 41
            KKRVE+YSTYIY+VLKQVHP+ GISK GMS+MNSFIND+FE
Sbjct:   27 KKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFE 67          
BLAST of mRNA_M-pyrifera_M_contig84351.19672.1 vs. uniprot
Match: A0A1E7F1X2_9STRA (Histone H2B n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F1X2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.180e-16
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 0
Query:    1 KKRVETYSTYIYRVLKQVHPNVGISKSGMSVMNSFINDLFE 41
            KKRVE+YSTYIY+VLKQVHP+ GISK GMS+MNSFIND+FE
Sbjct:   28 KKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFE 68          
BLAST of mRNA_M-pyrifera_M_contig84351.19672.1 vs. uniprot
Match: A0A7S2P1D6_9STRA (Histone H2B n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P1D6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.540e-16
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 0
Query:    1 KKRVETYSTYIYRVLKQVHPNVGISKSGMSVMNSFINDLFE 41
            KKRVE+YSTYIY+VLKQVHP+ GISK GMS+MNSFIND+FE
Sbjct:   60 KKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFE 100          
BLAST of mRNA_M-pyrifera_M_contig84351.19672.1 vs. uniprot
Match: K0TPB8_THAOC (Histone H2B n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TPB8_THAOC)

HSP 1 Score: 75.9 bits (185), Expect = 3.180e-16
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 0
Query:    1 KKRVETYSTYIYRVLKQVHPNVGISKSGMSVMNSFINDLFE 41
            KKRVE+YSTYIY+VLKQVHP+ GISK GMS+MNSFIND+FE
Sbjct:   70 KKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFE 110          
BLAST of mRNA_M-pyrifera_M_contig84351.19672.1 vs. uniprot
Match: A0A7S0L5X1_9EUKA (Histone H2B n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L5X1_9EUKA)

HSP 1 Score: 74.7 bits (182), Expect = 3.280e-16
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 0
Query:    1 KKRVETYSTYIYRVLKQVHPNVGISKSGMSVMNSFINDLFE 41
            K+RVETYSTYIYRVLKQVHP +G+S+  MS+MNSFINDLFE
Sbjct:   26 KRRVETYSTYIYRVLKQVHPEIGVSRRAMSIMNSFINDLFE 66          
BLAST of mRNA_M-pyrifera_M_contig84351.19672.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 74.3 bits (181), Expect = 4.200e-16
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 0
Query:    1 KKRVETYSTYIYRVLKQVHPNVGISKSGMSVMNSFINDLFE 41
            KKR ETYS+YIY+VLKQVHP+ GISK GMS+MNSFIND+FE
Sbjct:   23 KKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFE 63          
BLAST of mRNA_M-pyrifera_M_contig84351.19672.1 vs. uniprot
Match: A0A7S2U5X6_9STRA (Histone H2B (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5X6_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.200e-16
Identity = 33/41 (80.49%), Postives = 39/41 (95.12%), Query Frame = 0
Query:    1 KKRVETYSTYIYRVLKQVHPNVGISKSGMSVMNSFINDLFE 41
            KKRVE+YS+YIY+VLKQVHP+ GISK GMS+MNSFIND+FE
Sbjct:   27 KKRVESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFE 67          
BLAST of mRNA_M-pyrifera_M_contig84351.19672.1 vs. uniprot
Match: A0A482SFE7_9ARCH (Histone domain-containing protein n=2 Tax=archaeon TaxID=1906665 RepID=A0A482SFE7_9ARCH)

HSP 1 Score: 74.3 bits (181), Expect = 4.530e-16
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 0
Query:    2 KRVETYSTYIYRVLKQVHPNVGISKSGMSVMNSFINDLFE 41
            KR E+YSTYIYRVLKQVHPN GISK GMS++NSFIND+FE
Sbjct:   28 KRTESYSTYIYRVLKQVHPNTGISKRGMSILNSFINDIFE 67          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84351.19672.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2RDD0_9STRA1.090e-1682.93Histone H2B n=1 Tax=Eucampia antarctica TaxID=4925... [more]
A0A7S4ACZ1_9STRA1.120e-1682.93Histone H2B n=1 Tax=Pseudo-nitzschia australis Tax... [more]
B8BX20_THAPS1.150e-1682.93Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A1E7F1X2_9STRA1.180e-1682.93Histone H2B n=1 Tax=Fragilariopsis cylindrus CCMP1... [more]
A0A7S2P1D6_9STRA2.540e-1682.93Histone H2B n=2 Tax=Skeletonema marinoi TaxID=2675... [more]
K0TPB8_THAOC3.180e-1682.93Histone H2B n=1 Tax=Thalassiosira oceanica TaxID=1... [more]
A0A7S0L5X1_9EUKA3.280e-1680.49Histone H2B n=1 Tax=Coccolithus braarudii TaxID=22... [more]
B7FWR8_PHATC4.200e-1680.49Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A7S2U5X6_9STRA4.200e-1680.49Histone H2B (Fragment) n=1 Tax=Attheya septentrion... [more]
A0A482SFE7_9ARCH4.530e-1682.50Histone domain-containing protein n=2 Tax=archaeon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000558Histone H2BPRINTSPR00621HISTONEH2Bcoord: 26..41
score: 46.26
coord: 7..25
score: 71.28
IPR000558Histone H2BSMARTSM00427h2b3coord: 1..41
e-value: 0.0094
score: 9.9
IPR000558Histone H2BPANTHERPTHR23428HISTONE H2Bcoord: 1..41
IPR009072Histone-foldGENE3D1.10.20.10coord: 1..41
e-value: 4.9E-19
score: 70.5
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 1..41
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 2..41
e-value: 3.2E-7
score: 30.7
NoneNo IPR availablePANTHERPTHR23428:SF229coord: 1..41

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84351contigM-pyrifera_M_contig84351:273..395 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84351.19672.1mRNA_M-pyrifera_M_contig84351.19672.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig84351 273..395 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig84351.19672.1 ID=prot_M-pyrifera_M_contig84351.19672.1|Name=mRNA_M-pyrifera_M_contig84351.19672.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=41bp
KKRVETYSTYIYRVLKQVHPNVGISKSGMSVMNSFINDLFE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000558Histone_H2B
IPR009072Histone-fold
IPR007125Histone_H2A/H2B/H3