mRNA_M-pyrifera_M_contig84351.19672.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84351.19672.1
Unique NamemRNA_M-pyrifera_M_contig84351.19672.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84351.19672.1 vs. uniprot
Match: A0A7S2RDD0_9STRA (Histone H2B n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RDD0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.090e-16
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 KKRVETYSTYIYRVLKQVHPNVGISKSGMSVMNSFINDLFE 123
            KKRVE+YSTYIY+VLKQVHP+ GISK GMS+MNSFIND+FE
Sbjct:   25 KKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFE 65
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BLAST of mRNA_M-pyrifera_M_contig84351.19672.1 vs. uniprot
Match: A0A7S4ACZ1_9STRA (Histone H2B n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ACZ1_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.120e-16
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 KKRVETYSTYIYRVLKQVHPNVGISKSGMSVMNSFINDLFE 123
            KKRVE+YSTYIY+VLKQVHP+ GISK GMS+MNSFIND+FE
Sbjct:   26 KKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFE 66
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BLAST of mRNA_M-pyrifera_M_contig84351.19672.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 75.9 bits (185), Expect = 1.150e-16
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 KKRVETYSTYIYRVLKQVHPNVGISKSGMSVMNSFINDLFE 123
            KKRVE+YSTYIY+VLKQVHP+ GISK GMS+MNSFIND+FE
Sbjct:   27 KKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFE 67
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BLAST of mRNA_M-pyrifera_M_contig84351.19672.1 vs. uniprot
Match: A0A1E7F1X2_9STRA (Histone H2B n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F1X2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.180e-16
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 KKRVETYSTYIYRVLKQVHPNVGISKSGMSVMNSFINDLFE 123
            KKRVE+YSTYIY+VLKQVHP+ GISK GMS+MNSFIND+FE
Sbjct:   28 KKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFE 68
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BLAST of mRNA_M-pyrifera_M_contig84351.19672.1 vs. uniprot
Match: A0A7S2P1D6_9STRA (Histone H2B n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P1D6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.540e-16
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 KKRVETYSTYIYRVLKQVHPNVGISKSGMSVMNSFINDLFE 123
            KKRVE+YSTYIY+VLKQVHP+ GISK GMS+MNSFIND+FE
Sbjct:   60 KKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFE 100
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BLAST of mRNA_M-pyrifera_M_contig84351.19672.1 vs. uniprot
Match: K0TPB8_THAOC (Histone H2B n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TPB8_THAOC)

HSP 1 Score: 75.9 bits (185), Expect = 3.180e-16
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 KKRVETYSTYIYRVLKQVHPNVGISKSGMSVMNSFINDLFE 123
            KKRVE+YSTYIY+VLKQVHP+ GISK GMS+MNSFIND+FE
Sbjct:   70 KKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFE 110
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BLAST of mRNA_M-pyrifera_M_contig84351.19672.1 vs. uniprot
Match: A0A7S0L5X1_9EUKA (Histone H2B n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L5X1_9EUKA)

HSP 1 Score: 74.7 bits (182), Expect = 3.280e-16
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 KKRVETYSTYIYRVLKQVHPNVGISKSGMSVMNSFINDLFE 123
            K+RVETYSTYIYRVLKQVHP +G+S+  MS+MNSFINDLFE
Sbjct:   26 KRRVETYSTYIYRVLKQVHPEIGVSRRAMSIMNSFINDLFE 66
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BLAST of mRNA_M-pyrifera_M_contig84351.19672.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 74.3 bits (181), Expect = 4.200e-16
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 KKRVETYSTYIYRVLKQVHPNVGISKSGMSVMNSFINDLFE 123
            KKR ETYS+YIY+VLKQVHP+ GISK GMS+MNSFIND+FE
Sbjct:   23 KKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFE 63
[Close]
BLAST of mRNA_M-pyrifera_M_contig84351.19672.1 vs. uniprot
Match: A0A7S2U5X6_9STRA (Histone H2B (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5X6_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.200e-16
Identity = 33/41 (80.49%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 KKRVETYSTYIYRVLKQVHPNVGISKSGMSVMNSFINDLFE 123
            KKRVE+YS+YIY+VLKQVHP+ GISK GMS+MNSFIND+FE
Sbjct:   27 KKRVESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFE 67
[Close]
BLAST of mRNA_M-pyrifera_M_contig84351.19672.1 vs. uniprot
Match: A0A482SFE7_9ARCH (Histone domain-containing protein n=2 Tax=archaeon TaxID=1906665 RepID=A0A482SFE7_9ARCH)

HSP 1 Score: 74.3 bits (181), Expect = 4.530e-16
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    4 KRVETYSTYIYRVLKQVHPNVGISKSGMSVMNSFINDLFE 123
            KR E+YSTYIYRVLKQVHPN GISK GMS++NSFIND+FE
Sbjct:   28 KRTESYSTYIYRVLKQVHPNTGISKRGMSILNSFINDIFE 67
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84351.19672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2RDD0_9STRA1.090e-1682.93Histone H2B n=1 Tax=Eucampia antarctica TaxID=4925... [more]
A0A7S4ACZ1_9STRA1.120e-1682.93Histone H2B n=1 Tax=Pseudo-nitzschia australis Tax... [more]
B8BX20_THAPS1.150e-1682.93Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A1E7F1X2_9STRA1.180e-1682.93Histone H2B n=1 Tax=Fragilariopsis cylindrus CCMP1... [more]
A0A7S2P1D6_9STRA2.540e-1682.93Histone H2B n=2 Tax=Skeletonema marinoi TaxID=2675... [more]
K0TPB8_THAOC3.180e-1682.93Histone H2B n=1 Tax=Thalassiosira oceanica TaxID=1... [more]
A0A7S0L5X1_9EUKA3.280e-1680.49Histone H2B n=1 Tax=Coccolithus braarudii TaxID=22... [more]
B7FWR8_PHATC4.200e-1680.49Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A7S2U5X6_9STRA4.200e-1680.49Histone H2B (Fragment) n=1 Tax=Attheya septentrion... [more]
A0A482SFE7_9ARCH4.530e-1682.50Histone domain-containing protein n=2 Tax=archaeon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84351contigM-pyrifera_M_contig84351:273..395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue2.2e-12
Seed eggNOG ortholog159749.K0RE94
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.Histone H2B
EggNOG OGs2XCBM@2836,KOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size123
Cds size123
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816750.9651618-CDS-M-pyrifera_M_contig84351:272..3951622816750.9651618-CDS-M-pyrifera_M_contig84351:272..395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84351 273..395 +
1692278156.635481-CDS-M-pyrifera_M_contig84351:272..3951692278156.635481-CDS-M-pyrifera_M_contig84351:272..395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84351 273..395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84351.19672.1prot_M-pyrifera_M_contig84351.19672.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84351 273..395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84351.19672.1

>prot_M-pyrifera_M_contig84351.19672.1 ID=prot_M-pyrifera_M_contig84351.19672.1|Name=mRNA_M-pyrifera_M_contig84351.19672.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=41bp
KKRVETYSTYIYRVLKQVHPNVGISKSGMSVMNSFINDLFE
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mRNA from alignment at M-pyrifera_M_contig84351:273..395+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84351.19672.1 ID=mRNA_M-pyrifera_M_contig84351.19672.1|Name=mRNA_M-pyrifera_M_contig84351.19672.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=123bp|location=Sequence derived from alignment at M-pyrifera_M_contig84351:273..395+ (Macrocystis pyrifera P11B4 male)
AAGAAGCGCGTGGAGACGTACTCCACCTACATCTACCGCGTGCTGAAGCA
GGTGCACCCGAACGTGGGCATCAGCAAGTCCGGCATGAGCGTGATGAACT
CGTTCATCAACGACCTGTTCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84351:273..395+

>mRNA_M-pyrifera_M_contig84351.19672.1 ID=mRNA_M-pyrifera_M_contig84351.19672.1|Name=mRNA_M-pyrifera_M_contig84351.19672.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig84351:273..395+ (Macrocystis pyrifera P11B4 male)
AAGAAGCGCGTGGAGACGTACTCCACCTACATCTACCGCGTGCTGAAGCA
GGTGCACCCGAACGTGGGCATCAGCAAGTCCGGCATGAGCGTGATGAACT
CGTTCATCAACGACCTGTTCGAGAAGAAGCGCGTGGAGACGTACTCCACC
TACATCTACCGCGTGCTGAAGCAGGTGCACCCGAACGTGGGCATCAGCAA
GTCCGGCATGAGCGTGATGAACTCGTTCATCAACGACCTGTTCGAG
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