prot_M-pyrifera_M_contig80502.18861.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig80502.18861.1
Unique Nameprot_M-pyrifera_M_contig80502.18861.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length110
Homology
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BLAST of mRNA_M-pyrifera_M_contig80502.18861.1 vs. uniprot
Match: A0A316UVT4_9BASI (WD40 repeat-like protein n=1 Tax=Jaminaea rosea TaxID=1569628 RepID=A0A316UVT4_9BASI)

HSP 1 Score: 50.1 bits (118), Expect = 9.950e-5
Identity = 38/106 (35.85%), Postives = 55/106 (51.89%), Query Frame = 0 
Query:    5 ADKVVATGCDDGSVVLVGVETGARLPALH-HGESVTHLSFSSSSRYLASGSESL-LKVWDLKHRRGGVPLLEYALSSPLVSVSFDRSQRRVL-AVLESGTALLWEL 107
            A + +A    D +V +  +ET + +  L  H   VT L +SS+ R+L SGS    + VWDLK R GG         +P+  V+F     RVL  VLES  A++ +L
Sbjct:   42 AGQYIAAARADCAVAIYDLETRSLVRFLEGHVRPVTSLDWSSTGRFLVSGSMDWNVVVWDLKKREGGARTRTIRFDAPVSQVTFAPGTSRVLLVVLESQQAIVVDL 147
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80502.18861.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A316UVT4_9BASI9.950e-535.85WD40 repeat-like protein n=1 Tax=Jaminaea rosea Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 25..62
e-value: 0.0017
score: 27.6
coord: 68..106
e-value: 81.0
score: 4.9
IPR001680WD40 repeatPFAMPF00400WD40coord: 34..62
e-value: 5.6E-5
score: 23.8
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 31..64
score: 8.503
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..109
e-value: 2.1E-16
score: 62.1
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 31..110
score: 10.786
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 3..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80502contigM-pyrifera_M_contig80502:256..585 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80502.18861.1mRNA_M-pyrifera_M_contig80502.18861.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig80502 256..585 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig80502.18861.1 ID=prot_M-pyrifera_M_contig80502.18861.1|Name=mRNA_M-pyrifera_M_contig80502.18861.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
MFWSADKVVATGCDDGSVVLVGVETGARLPALHHGESVTHLSFSSSSRYL
ASGSESLLKVWDLKHRRGGVPLLEYALSSPLVSVSFDRSQRRVLAVLESG
TALLWELEDI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf