prot_M-pyrifera_M_contig77918.18325.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig77918.18325.1
Unique Nameprot_M-pyrifera_M_contig77918.18325.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length62
Homology
BLAST of mRNA_M-pyrifera_M_contig77918.18325.1 vs. uniprot
Match: D8LNJ0_ECTSI (Vesicle coat complex COPI, beta sub-unit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNJ0_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 5.750e-28
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 0
Query:    3 DISSFVAGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIILSGGEDGTVRLW 61
            D    ++GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPII+S GEDGT+RLW
Sbjct:   14 DRPDLLSGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRLW 72          
BLAST of mRNA_M-pyrifera_M_contig77918.18325.1 vs. uniprot
Match: A0A7S3PEI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PEI6_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 7.150e-24
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 0
Query:    8 VAGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIILSGGEDGTVRLW 61
            V+G+DD  +KIWDYQTKTCVQTLEGHT NVSAV+FH +LPIILSG EDGTVR+W
Sbjct:  122 VSGADDLKIKIWDYQTKTCVQTLEGHTGNVSAVMFHPKLPIILSGSEDGTVRVW 175          
BLAST of mRNA_M-pyrifera_M_contig77918.18325.1 vs. uniprot
Match: A0A7S1F1A2_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1F1A2_NOCSC)

HSP 1 Score: 96.7 bits (239), Expect = 6.760e-22
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 0
Query:    8 VAGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIILSGGEDGTVRLW 61
            ++GSDD+TV IWDYQTK CVQTL GHTNNVS  LFH  LPIIL+GGEDGTVR+W
Sbjct:  112 ISGSDDKTVCIWDYQTKQCVQTLTGHTNNVSVALFHPTLPIILTGGEDGTVRVW 165          
BLAST of mRNA_M-pyrifera_M_contig77918.18325.1 vs. uniprot
Match: UPI0008F9C4D7 (coatomer subunit beta' n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9C4D7)

HSP 1 Score: 95.9 bits (237), Expect = 1.260e-21
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 0
Query:    8 VAGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIILSGGEDGTVRLW 61
            ++G+DDR VKIWDYQ KTCVQTLEGHT N+++V FH  LPIILSG EDGTVR+W
Sbjct:  208 ISGADDRMVKIWDYQNKTCVQTLEGHTENIASVCFHPELPIILSGSEDGTVRIW 261          
BLAST of mRNA_M-pyrifera_M_contig77918.18325.1 vs. uniprot
Match: A0A7S3HJI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJI1_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.330e-21
Identity = 40/54 (74.07%), Postives = 49/54 (90.74%), Query Frame = 0
Query:    8 VAGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIILSGGEDGTVRLW 61
            ++G+DDRTVKIWDYQTK C+QTLEGH++NVS+V FH RLP+I+S  EDGTVRLW
Sbjct:  207 LSGADDRTVKIWDYQTKACLQTLEGHSHNVSSVCFHPRLPMIISASEDGTVRLW 260          
BLAST of mRNA_M-pyrifera_M_contig77918.18325.1 vs. uniprot
Match: A0A293LKK5_ORNER (Vesicle coat complex COPI, beta' subunit (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293LKK5_ORNER)

HSP 1 Score: 92.8 bits (229), Expect = 5.420e-21
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    8 VAGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIILSGGEDGTVRLW 61
            ++G+DDR VKIWDYQ KTCVQTLEGH  N++AV FH  LPII++G EDGTVR+W
Sbjct:   76 ISGADDRLVKIWDYQNKTCVQTLEGHAQNITAVSFHPELPIIMTGSEDGTVRIW 129          
BLAST of mRNA_M-pyrifera_M_contig77918.18325.1 vs. uniprot
Match: A0A7S1Y0J4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0J4_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.080e-20
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0
Query:    8 VAGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIILSGGEDGTVRLW 61
            ++G+DD  ++IWDYQTK+CVQ LEGH+NNVSAV FH RLP+I+S  EDGTVRLW
Sbjct:  206 ISGADDTQIRIWDYQTKSCVQVLEGHSNNVSAVCFHPRLPLIVSASEDGTVRLW 259          
BLAST of mRNA_M-pyrifera_M_contig77918.18325.1 vs. uniprot
Match: A0A7J0DUC6_9ERIC (Coatomer, beta' subunit n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0DUC6_9ERIC)

HSP 1 Score: 88.6 bits (218), Expect = 2.650e-20
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 0
Query:    3 DISSFVAGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIILSGGEDGTVRLW 61
            D    VAGSDD   K+WDYQT+TCVQTLEGH  NVSAV  H   PII++G EDGT+R+W
Sbjct:  150 DKPCLVAGSDDYAAKVWDYQTRTCVQTLEGHKKNVSAVCVHPEFPIIVTGSEDGTIRVW 208          
BLAST of mRNA_M-pyrifera_M_contig77918.18325.1 vs. uniprot
Match: A0A7J9F2A7_9ROSI (Coatomer subunit beta' n=1 Tax=Gossypium trilobum TaxID=34281 RepID=A0A7J9F2A7_9ROSI)

HSP 1 Score: 91.7 bits (226), Expect = 3.880e-20
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 0
Query:    8 VAGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIILSGGEDGTVRL 60
            + GSDD T K+WDYQTK+CVQTLEGHT+NVSAV FH  LPII++G EDGTVR+
Sbjct:  176 ITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPDLPIIITGSEDGTVRI 228          
BLAST of mRNA_M-pyrifera_M_contig77918.18325.1 vs. uniprot
Match: A0A5B7DSI3_PORTR (Coatomer subunit beta n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7DSI3_PORTR)

HSP 1 Score: 88.2 bits (217), Expect = 3.970e-20
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 0
Query:    8 VAGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIILSGGEDGTVRLW 61
            ++G+DD  VKIWDYQ KTCVQTLEGH+ NVS+V FH  LPIIL+G ED TVR+W
Sbjct:   95 ISGADDSLVKIWDYQNKTCVQTLEGHSQNVSSVSFHPELPIILTGSEDCTVRVW 148          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77918.18325.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNJ0_ECTSI5.750e-2884.75Vesicle coat complex COPI, beta sub-unit n=1 Tax=E... [more]
A0A7S3PEI6_9STRA7.150e-2479.63Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A7S1F1A2_NOCSC6.760e-2277.78Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
UPI0008F9C4D71.260e-2174.07coatomer subunit beta' n=1 Tax=Bemisia tabaci TaxI... [more]
A0A7S3HJI1_9STRA2.330e-2174.07Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A293LKK5_ORNER5.420e-2170.37Vesicle coat complex COPI, beta' subunit (Fragment... [more]
A0A7S1Y0J4_9STRA2.080e-2070.37Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A7J0DUC6_9ERIC2.650e-2064.41Coatomer, beta' subunit n=1 Tax=Actinidia rufa Tax... [more]
A0A7J9F2A7_9ROSI3.880e-2073.58Coatomer subunit beta' n=1 Tax=Gossypium trilobum ... [more]
A0A5B7DSI3_PORTR3.970e-2070.37Coatomer subunit beta n=1 Tax=Portunus tritubercul... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 23..61
e-value: 2.5E-4
score: 30.4
IPR001680WD40 repeatPFAMPF00400WD40coord: 25..61
e-value: 2.7E-8
score: 34.3
coord: 6..20
e-value: 0.0013
score: 19.5
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..29
score: 10.876
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 30..61
score: 15.722
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..61
e-value: 5.0E-24
score: 86.7
NoneNo IPR availablePANTHERPTHR19876COATOMERcoord: 8..61
NoneNo IPR availablePANTHERPTHR19876:SF2COATOMER SUBUNIT BETA'coord: 8..61
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..61
score: 22.016
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 7..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77918contigM-pyrifera_M_contig77918:252..437 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77918.18325.1mRNA_M-pyrifera_M_contig77918.18325.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig77918 252..437 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig77918.18325.1 ID=prot_M-pyrifera_M_contig77918.18325.1|Name=mRNA_M-pyrifera_M_contig77918.18325.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
ALDISSFVAGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIL
SGGEDGTVRLW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf