mRNA_M-pyrifera_M_contig77918.18325.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77918.18325.1
Unique NamemRNA_M-pyrifera_M_contig77918.18325.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77918.18325.1 vs. uniprot
Match: D8LNJ0_ECTSI (Vesicle coat complex COPI, beta sub-unit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNJ0_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 5.750e-28
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    7 DISSFVAGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIILSGGEDGTVRLW 183
            D    ++GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPII+S GEDGT+RLW
Sbjct:   14 DRPDLLSGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRLW 72
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BLAST of mRNA_M-pyrifera_M_contig77918.18325.1 vs. uniprot
Match: A0A7S3PEI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PEI6_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 7.150e-24
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:   22 VAGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIILSGGEDGTVRLW 183
            V+G+DD  +KIWDYQTKTCVQTLEGHT NVSAV+FH +LPIILSG EDGTVR+W
Sbjct:  122 VSGADDLKIKIWDYQTKTCVQTLEGHTGNVSAVMFHPKLPIILSGSEDGTVRVW 175
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BLAST of mRNA_M-pyrifera_M_contig77918.18325.1 vs. uniprot
Match: A0A7S1F1A2_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1F1A2_NOCSC)

HSP 1 Score: 96.7 bits (239), Expect = 6.760e-22
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:   22 VAGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIILSGGEDGTVRLW 183
            ++GSDD+TV IWDYQTK CVQTL GHTNNVS  LFH  LPIIL+GGEDGTVR+W
Sbjct:  112 ISGSDDKTVCIWDYQTKQCVQTLTGHTNNVSVALFHPTLPIILTGGEDGTVRVW 165
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BLAST of mRNA_M-pyrifera_M_contig77918.18325.1 vs. uniprot
Match: UPI0008F9C4D7 (coatomer subunit beta' n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9C4D7)

HSP 1 Score: 95.9 bits (237), Expect = 1.260e-21
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:   22 VAGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIILSGGEDGTVRLW 183
            ++G+DDR VKIWDYQ KTCVQTLEGHT N+++V FH  LPIILSG EDGTVR+W
Sbjct:  208 ISGADDRMVKIWDYQNKTCVQTLEGHTENIASVCFHPELPIILSGSEDGTVRIW 261
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BLAST of mRNA_M-pyrifera_M_contig77918.18325.1 vs. uniprot
Match: A0A7S3HJI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJI1_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.330e-21
Identity = 40/54 (74.07%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:   22 VAGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIILSGGEDGTVRLW 183
            ++G+DDRTVKIWDYQTK C+QTLEGH++NVS+V FH RLP+I+S  EDGTVRLW
Sbjct:  207 LSGADDRTVKIWDYQTKACLQTLEGHSHNVSSVCFHPRLPMIISASEDGTVRLW 260
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BLAST of mRNA_M-pyrifera_M_contig77918.18325.1 vs. uniprot
Match: A0A293LKK5_ORNER (Vesicle coat complex COPI, beta' subunit (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293LKK5_ORNER)

HSP 1 Score: 92.8 bits (229), Expect = 5.420e-21
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:   22 VAGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIILSGGEDGTVRLW 183
            ++G+DDR VKIWDYQ KTCVQTLEGH  N++AV FH  LPII++G EDGTVR+W
Sbjct:   76 ISGADDRLVKIWDYQNKTCVQTLEGHAQNITAVSFHPELPIIMTGSEDGTVRIW 129
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BLAST of mRNA_M-pyrifera_M_contig77918.18325.1 vs. uniprot
Match: A0A7S1Y0J4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0J4_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.080e-20
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:   22 VAGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIILSGGEDGTVRLW 183
            ++G+DD  ++IWDYQTK+CVQ LEGH+NNVSAV FH RLP+I+S  EDGTVRLW
Sbjct:  206 ISGADDTQIRIWDYQTKSCVQVLEGHSNNVSAVCFHPRLPLIVSASEDGTVRLW 259
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BLAST of mRNA_M-pyrifera_M_contig77918.18325.1 vs. uniprot
Match: A0A7J0DUC6_9ERIC (Coatomer, beta' subunit n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0DUC6_9ERIC)

HSP 1 Score: 88.6 bits (218), Expect = 2.650e-20
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    7 DISSFVAGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIILSGGEDGTVRLW 183
            D    VAGSDD   K+WDYQT+TCVQTLEGH  NVSAV  H   PII++G EDGT+R+W
Sbjct:  150 DKPCLVAGSDDYAAKVWDYQTRTCVQTLEGHKKNVSAVCVHPEFPIIVTGSEDGTIRVW 208
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BLAST of mRNA_M-pyrifera_M_contig77918.18325.1 vs. uniprot
Match: A0A7J9F2A7_9ROSI (Coatomer subunit beta' n=1 Tax=Gossypium trilobum TaxID=34281 RepID=A0A7J9F2A7_9ROSI)

HSP 1 Score: 91.7 bits (226), Expect = 3.880e-20
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:   22 VAGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIILSGGEDGTVRL 180
            + GSDD T K+WDYQTK+CVQTLEGHT+NVSAV FH  LPII++G EDGTVR+
Sbjct:  176 ITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPDLPIIITGSEDGTVRI 228
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BLAST of mRNA_M-pyrifera_M_contig77918.18325.1 vs. uniprot
Match: A0A5B7DSI3_PORTR (Coatomer subunit beta n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7DSI3_PORTR)

HSP 1 Score: 88.2 bits (217), Expect = 3.970e-20
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   22 VAGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIILSGGEDGTVRLW 183
            ++G+DD  VKIWDYQ KTCVQTLEGH+ NVS+V FH  LPIIL+G ED TVR+W
Sbjct:   95 ISGADDSLVKIWDYQNKTCVQTLEGHSQNVSSVSFHPELPIILTGSEDCTVRVW 148
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77918.18325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNJ0_ECTSI5.750e-2884.75Vesicle coat complex COPI, beta sub-unit n=1 Tax=E... [more]
A0A7S3PEI6_9STRA7.150e-2479.63Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A7S1F1A2_NOCSC6.760e-2277.78Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
UPI0008F9C4D71.260e-2174.07coatomer subunit beta' n=1 Tax=Bemisia tabaci TaxI... [more]
A0A7S3HJI1_9STRA2.330e-2174.07Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A293LKK5_ORNER5.420e-2170.37Vesicle coat complex COPI, beta' subunit (Fragment... [more]
A0A7S1Y0J4_9STRA2.080e-2070.37Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A7J0DUC6_9ERIC2.650e-2064.41Coatomer, beta' subunit n=1 Tax=Actinidia rufa Tax... [more]
A0A7J9F2A7_9ROSI3.880e-2073.58Coatomer subunit beta' n=1 Tax=Gossypium trilobum ... [more]
A0A5B7DSI3_PORTR3.970e-2070.37Coatomer subunit beta n=1 Tax=Portunus tritubercul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77918contigM-pyrifera_M_contig77918:252..437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue4.3e-23
Seed eggNOG ortholog2880.D8LNJ0
KEGG koko:K17302
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0008104,GO:0008150,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098796,GO:0098805
EggNOG free text desc.The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
EggNOG OGsKOG0276@1,KOG0276@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Exons1
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816680.482221-CDS-M-pyrifera_M_contig77918:251..4371622816680.482221-CDS-M-pyrifera_M_contig77918:251..437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77918 252..437 +
1692278115.906492-CDS-M-pyrifera_M_contig77918:251..4371692278115.906492-CDS-M-pyrifera_M_contig77918:251..437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77918 252..437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77918.18325.1prot_M-pyrifera_M_contig77918.18325.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77918 252..437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77918.18325.1

>prot_M-pyrifera_M_contig77918.18325.1 ID=prot_M-pyrifera_M_contig77918.18325.1|Name=mRNA_M-pyrifera_M_contig77918.18325.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
ALDISSFVAGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIL
SGGEDGTVRLW*
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mRNA from alignment at M-pyrifera_M_contig77918:252..437+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77918.18325.1 ID=mRNA_M-pyrifera_M_contig77918.18325.1|Name=mRNA_M-pyrifera_M_contig77918.18325.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=186bp|location=Sequence derived from alignment at M-pyrifera_M_contig77918:252..437+ (Macrocystis pyrifera P11B4 male)
GCTCTCGACATATCTTCGTTCGTGGCAGGTTCGGATGACCGCACGGTGAA
GATCTGGGACTACCAGACGAAGACCTGCGTGCAGACCCTCGAGGGGCACA
CCAACAACGTCTCCGCAGTGCTATTCCACAAGCGCCTCCCGATCATCCTG
TCCGGCGGGGAGGACGGCACCGTGCGTCTCTGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77918:252..437+

>mRNA_M-pyrifera_M_contig77918.18325.1 ID=mRNA_M-pyrifera_M_contig77918.18325.1|Name=mRNA_M-pyrifera_M_contig77918.18325.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig77918:252..437+ (Macrocystis pyrifera P11B4 male)
GCTCTCGACATATCTTCGTTCGTGGCAGGTTCGGATGACCGCACGGTGAA
GATCTGGGACTACCAGACGAAGACCTGCGTGCAGACCCTCGAGGGGCACA
CCAACAACGTCTCCGCAGTGCTATTCCACAAGCGCCTCCCGATCATCCTG
TCCGGCGGGGAGGACGGCACCGTGCGTCTCTGGTGAGCTCTCGACATATC
TTCGTTCGTGGCAGGTTCGGATGACCGCACGGTGAAGATCTGGGACTACC
AGACGAAGACCTGCGTGCAGACCCTCGAGGGGCACACCAACAACGTCTCC
GCAGTGCTATTCCACAAGCGCCTCCCGATCATCCTGTCCGGCGGGGAGGA
CGGCACCGTGCGTCTCTGGTGA
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