prot_M-pyrifera_M_contig74293.17596.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig74293.17596.1
Unique Nameprot_M-pyrifera_M_contig74293.17596.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length63
Homology
BLAST of mRNA_M-pyrifera_M_contig74293.17596.1 vs. uniprot
Match: A0A7X5WS68_9ACTN (L,D-transpeptidase family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WS68_9ACTN)

HSP 1 Score: 104 bits (259), Expect = 1.040e-25
Identity = 47/62 (75.81%), Postives = 55/62 (88.71%), Query Frame = 0
Query:    1 SGYSDTFETFNGGPGQLGIHGTNDPDTLGSNVSSGCIRLHNDDITRMVDEIKVTTGVPVEIL 62
            SGYS+TF  FNGGPGQLGIHGT+DP TLG+NVSSGCIRLHNDDIT +V+ +KV TG PVE++
Sbjct:  232 SGYSETFTAFNGGPGQLGIHGTDDPATLGTNVSSGCIRLHNDDITHLVEGLKVPTGAPVEVI 293          
BLAST of mRNA_M-pyrifera_M_contig74293.17596.1 vs. uniprot
Match: A0A0R2QDD3_9ACTN (YkuD domain-containing protein n=1 Tax=Acidimicrobiia bacterium BACL6 MAG-120924-bin43 TaxID=1655583 RepID=A0A0R2QDD3_9ACTN)

HSP 1 Score: 99.0 bits (245), Expect = 5.910e-24
Identity = 44/62 (70.97%), Postives = 54/62 (87.10%), Query Frame = 0
Query:    1 SGYSDTFETFNGGPGQLGIHGTNDPDTLGSNVSSGCIRLHNDDITRMVDEIKVTTGVPVEIL 62
            SG+SDTF+T  GGPGQLGIHGTNDP TLG+NVSSGC+RLHNDDIT + + I++  GVPV+I+
Sbjct:  193 SGFSDTFDTLAGGPGQLGIHGTNDPKTLGTNVSSGCVRLHNDDITYLAESIQLPLGVPVDII 254          
BLAST of mRNA_M-pyrifera_M_contig74293.17596.1 vs. uniprot
Match: A0A2E3TSA8_9ACTN (L,D-transpeptidase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A2E3TSA8_9ACTN)

HSP 1 Score: 97.8 bits (242), Expect = 2.950e-23
Identity = 44/62 (70.97%), Postives = 55/62 (88.71%), Query Frame = 0
Query:    1 SGYSDTFETFNGGPGQLGIHGTNDPDTLGSNVSSGCIRLHNDDITRMVDEIKVTTGVPVEIL 62
            SGYSDTFE+F GGPGQLGIHGTN+P  LG+NVSSGC+RLHNDDIT +V+ +++  GVPV+I+
Sbjct:  225 SGYSDTFESFLGGPGQLGIHGTNEPWALGTNVSSGCVRLHNDDITYLVETLQLPLGVPVDII 286          
BLAST of mRNA_M-pyrifera_M_contig74293.17596.1 vs. uniprot
Match: A0A7Y1TZB5_9ACTN (L,D-transpeptidase n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y1TZB5_9ACTN)

HSP 1 Score: 94.4 bits (233), Expect = 4.350e-22
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = 0
Query:    1 SGYSDTFETFNGGPGQLGIHGTNDPDTLGSNVSSGCIRLHNDDITRMVDEIKVTTGVPVEI 61
            SG+SDTFETFNGGPGQLGIHGTN P+ LG+NVSSGCIRLHNDD+ R+V  + +  GVPV++
Sbjct:  206 SGFSDTFETFNGGPGQLGIHGTNAPEALGTNVSSGCIRLHNDDVARLVRFLPL--GVPVDV 264          
BLAST of mRNA_M-pyrifera_M_contig74293.17596.1 vs. uniprot
Match: A0A6J6ZBR0_9ZZZZ (Unannotated protein n=3 Tax=root TaxID=1 RepID=A0A6J6ZBR0_9ZZZZ)

HSP 1 Score: 88.6 bits (218), Expect = 8.690e-20
Identity = 41/62 (66.13%), Postives = 52/62 (83.87%), Query Frame = 0
Query:    1 SGYSDTFETFNGGPGQLGIHGTNDPDTLGSNVSSGCIRLHNDDITRMVDEIKVTTGVPVEIL 62
            SG+SDTFETFNGGPGQLGIHGTNDP ++G  VSSGC+RL N+DI+R+   + +  GVPV+I+
Sbjct:  218 SGFSDTFETFNGGPGQLGIHGTNDPTSIGQKVSSGCVRLRNEDISRLAAILPL--GVPVQII 277          
BLAST of mRNA_M-pyrifera_M_contig74293.17596.1 vs. uniprot
Match: A0A2E8LCI2_9ACTN (L,D-transpeptidase n=4 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8LCI2_9ACTN)

HSP 1 Score: 87.8 bits (216), Expect = 1.760e-19
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 0
Query:    1 SGYSDTFETFNGGPGQLGIHGTNDPDTLGSNVSSGCIRLHNDDITRMVDEIKVTTGVPVEIL 62
            SGYS+    F GG GQLGIHGTNDP +LG+NVSSGCIR+HNDDI  +V+ I +  GVPVE++
Sbjct:  219 SGYSEVLTEFAGGEGQLGIHGTNDPSSLGTNVSSGCIRVHNDDINLLVERIGLPLGVPVEVI 280          
BLAST of mRNA_M-pyrifera_M_contig74293.17596.1 vs. uniprot
Match: A0A7Y2DED3_9ACTN (L,D-transpeptidase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DED3_9ACTN)

HSP 1 Score: 85.1 bits (209), Expect = 1.350e-18
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 0
Query:    1 SGYSDTFETFNGGPGQLGIHGTNDPDTLGSNVSSGCIRLHNDDITRMVDEIKVTTGVPVEIL 62
            SG+S+TF+TF GGPGQLGIHGTNDPD+LGSNVSSGC+RL + DI  +V  + +  G PVE++
Sbjct:  199 SGFSETFQTFEGGPGQLGIHGTNDPDSLGSNVSSGCVRLADGDIEALVGLLPL--GTPVEVI 258          
BLAST of mRNA_M-pyrifera_M_contig74293.17596.1 vs. uniprot
Match: UPI000836FF2E (L,D-transpeptidase n=1 Tax=Nocardiopsis trehalosi TaxID=109329 RepID=UPI000836FF2E)

HSP 1 Score: 83.6 bits (205), Expect = 5.300e-18
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 0
Query:    1 SGYSDTFETFNGGPGQLGIHGTNDPDTLGSNVSSGCIRLHNDDITRMVDEIKVTTGVPVEIL 62
            SG+S+T ETF GGPGQL +HGTNDPD LG  +S GCIR+ NDDIT M + + V  G PVEIL
Sbjct:  200 SGHSETLETFAGGPGQLAVHGTNDPDALGQQISHGCIRVSNDDITWMAENLPV--GTPVEIL 259          
BLAST of mRNA_M-pyrifera_M_contig74293.17596.1 vs. uniprot
Match: A0A358A2E6_9ACTN (Murein L,D-transpeptidase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358A2E6_9ACTN)

HSP 1 Score: 77.4 bits (189), Expect = 1.170e-17
Identity = 34/48 (70.83%), Postives = 43/48 (89.58%), Query Frame = 0
Query:   15 GQLGIHGTNDPDTLGSNVSSGCIRLHNDDITRMVDEIKVTTGVPVEIL 62
            GQLGIHGTNDP +LG+NVSSGCIRLHNDDI+ +V++I +  GVPVE++
Sbjct:    2 GQLGIHGTNDPSSLGTNVSSGCIRLHNDDISLLVEQIGLPLGVPVEVI 49          
BLAST of mRNA_M-pyrifera_M_contig74293.17596.1 vs. uniprot
Match: UPI001E4C37BD (L,D-transpeptidase n=1 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI001E4C37BD)

HSP 1 Score: 81.3 bits (199), Expect = 4.500e-17
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 0
Query:    1 SGYSDTFETFNGGPGQLGIHGTNDPDTLGSNVSSGCIRLHNDDITRMVDEIKVTTGVPVEIL 62
            SG+SD   +FNGGPGQLGIHGTN P+ +GS VS+GCIR+HNDDI  + + + +  GVPVE++
Sbjct:  208 SGFSDVLTSFNGGPGQLGIHGTNRPELIGSKVSNGCIRMHNDDIVALSEILPL--GVPVEVI 267          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74293.17596.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X5WS68_9ACTN1.040e-2575.81L,D-transpeptidase family protein n=1 Tax=Actinomy... [more]
A0A0R2QDD3_9ACTN5.910e-2470.97YkuD domain-containing protein n=1 Tax=Acidimicrob... [more]
A0A2E3TSA8_9ACTN2.950e-2370.97L,D-transpeptidase n=1 Tax=Ilumatobacter sp. TaxID... [more]
A0A7Y1TZB5_9ACTN4.350e-2272.13L,D-transpeptidase n=2 Tax=Acidimicrobiales bacter... [more]
A0A6J6ZBR0_9ZZZZ8.690e-2066.13Unannotated protein n=3 Tax=root TaxID=1 RepID=A0A... [more]
A0A2E8LCI2_9ACTN1.760e-1964.52L,D-transpeptidase n=4 Tax=Acidimicrobiaceae bacte... [more]
A0A7Y2DED3_9ACTN1.350e-1864.52L,D-transpeptidase n=1 Tax=Acidimicrobiales bacter... [more]
UPI000836FF2E5.300e-1864.52L,D-transpeptidase n=1 Tax=Nocardiopsis trehalosi ... [more]
A0A358A2E6_9ACTN1.170e-1770.83Murein L,D-transpeptidase (Fragment) n=1 Tax=Acidi... [more]
UPI001E4C37BD4.500e-1759.68L,D-transpeptidase n=1 Tax=Rhabdothermincola sp. E... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038063L,D-transpeptidase catalytic domain-likeGENE3D2.40.440.10coord: 2..61
e-value: 1.2E-15
score: 59.5
IPR038063L,D-transpeptidase catalytic domain-likeSUPERFAMILY141523L,D-transpeptidase catalytic domain-likecoord: 14..59
IPR005490L,D-transpeptidase catalytic domainPFAMPF03734YkuDcoord: 15..59
e-value: 1.8E-8
score: 34.9
NoneNo IPR availablePANTHERPTHR30582UNCHARACTERIZEDcoord: 16..59
NoneNo IPR availablePANTHERPTHR30582:SF24L,D-TRANSPEPTIDASE YBIS-RELATEDcoord: 16..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74293contigM-pyrifera_M_contig74293:2..190 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74293.17596.1mRNA_M-pyrifera_M_contig74293.17596.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig74293 2..190 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig74293.17596.1 ID=prot_M-pyrifera_M_contig74293.17596.1|Name=mRNA_M-pyrifera_M_contig74293.17596.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=63bp
SGYSDTFETFNGGPGQLGIHGTNDPDTLGSNVSSGCIRLHNDDITRMVDE
IKVTTGVPVEIL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038063Transpep_catalytic_dom
IPR005490LD_TPept_cat_dom