mRNA_M-pyrifera_M_contig74293.17596.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74293.17596.1
Unique NamemRNA_M-pyrifera_M_contig74293.17596.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74293.17596.1 vs. uniprot
Match: A0A7X5WS68_9ACTN (L,D-transpeptidase family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WS68_9ACTN)

HSP 1 Score: 104 bits (259), Expect = 1.040e-25
Identity = 47/62 (75.81%), Postives = 55/62 (88.71%), Query Frame = 1
Query:    1 SGYSDTFETFNGGPGQLGIHGTNDPDTLGSNVSSGCIRLHNDDITRMVDEIKVTTGVPVEIL 186
            SGYS+TF  FNGGPGQLGIHGT+DP TLG+NVSSGCIRLHNDDIT +V+ +KV TG PVE++
Sbjct:  232 SGYSETFTAFNGGPGQLGIHGTDDPATLGTNVSSGCIRLHNDDITHLVEGLKVPTGAPVEVI 293          
BLAST of mRNA_M-pyrifera_M_contig74293.17596.1 vs. uniprot
Match: A0A0R2QDD3_9ACTN (YkuD domain-containing protein n=1 Tax=Acidimicrobiia bacterium BACL6 MAG-120924-bin43 TaxID=1655583 RepID=A0A0R2QDD3_9ACTN)

HSP 1 Score: 99.0 bits (245), Expect = 5.910e-24
Identity = 44/62 (70.97%), Postives = 54/62 (87.10%), Query Frame = 1
Query:    1 SGYSDTFETFNGGPGQLGIHGTNDPDTLGSNVSSGCIRLHNDDITRMVDEIKVTTGVPVEIL 186
            SG+SDTF+T  GGPGQLGIHGTNDP TLG+NVSSGC+RLHNDDIT + + I++  GVPV+I+
Sbjct:  193 SGFSDTFDTLAGGPGQLGIHGTNDPKTLGTNVSSGCVRLHNDDITYLAESIQLPLGVPVDII 254          
BLAST of mRNA_M-pyrifera_M_contig74293.17596.1 vs. uniprot
Match: A0A2E3TSA8_9ACTN (L,D-transpeptidase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A2E3TSA8_9ACTN)

HSP 1 Score: 97.8 bits (242), Expect = 2.950e-23
Identity = 44/62 (70.97%), Postives = 55/62 (88.71%), Query Frame = 1
Query:    1 SGYSDTFETFNGGPGQLGIHGTNDPDTLGSNVSSGCIRLHNDDITRMVDEIKVTTGVPVEIL 186
            SGYSDTFE+F GGPGQLGIHGTN+P  LG+NVSSGC+RLHNDDIT +V+ +++  GVPV+I+
Sbjct:  225 SGYSDTFESFLGGPGQLGIHGTNEPWALGTNVSSGCVRLHNDDITYLVETLQLPLGVPVDII 286          
BLAST of mRNA_M-pyrifera_M_contig74293.17596.1 vs. uniprot
Match: A0A7Y1TZB5_9ACTN (L,D-transpeptidase n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y1TZB5_9ACTN)

HSP 1 Score: 94.4 bits (233), Expect = 4.350e-22
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = 1
Query:    1 SGYSDTFETFNGGPGQLGIHGTNDPDTLGSNVSSGCIRLHNDDITRMVDEIKVTTGVPVEI 183
            SG+SDTFETFNGGPGQLGIHGTN P+ LG+NVSSGCIRLHNDD+ R+V  + +  GVPV++
Sbjct:  206 SGFSDTFETFNGGPGQLGIHGTNAPEALGTNVSSGCIRLHNDDVARLVRFLPL--GVPVDV 264          
BLAST of mRNA_M-pyrifera_M_contig74293.17596.1 vs. uniprot
Match: A0A6J6ZBR0_9ZZZZ (Unannotated protein n=3 Tax=root TaxID=1 RepID=A0A6J6ZBR0_9ZZZZ)

HSP 1 Score: 88.6 bits (218), Expect = 8.690e-20
Identity = 41/62 (66.13%), Postives = 52/62 (83.87%), Query Frame = 1
Query:    1 SGYSDTFETFNGGPGQLGIHGTNDPDTLGSNVSSGCIRLHNDDITRMVDEIKVTTGVPVEIL 186
            SG+SDTFETFNGGPGQLGIHGTNDP ++G  VSSGC+RL N+DI+R+   + +  GVPV+I+
Sbjct:  218 SGFSDTFETFNGGPGQLGIHGTNDPTSIGQKVSSGCVRLRNEDISRLAAILPL--GVPVQII 277          
BLAST of mRNA_M-pyrifera_M_contig74293.17596.1 vs. uniprot
Match: A0A2E8LCI2_9ACTN (L,D-transpeptidase n=4 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8LCI2_9ACTN)

HSP 1 Score: 87.8 bits (216), Expect = 1.760e-19
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 1
Query:    1 SGYSDTFETFNGGPGQLGIHGTNDPDTLGSNVSSGCIRLHNDDITRMVDEIKVTTGVPVEIL 186
            SGYS+    F GG GQLGIHGTNDP +LG+NVSSGCIR+HNDDI  +V+ I +  GVPVE++
Sbjct:  219 SGYSEVLTEFAGGEGQLGIHGTNDPSSLGTNVSSGCIRVHNDDINLLVERIGLPLGVPVEVI 280          
BLAST of mRNA_M-pyrifera_M_contig74293.17596.1 vs. uniprot
Match: A0A7Y2DED3_9ACTN (L,D-transpeptidase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DED3_9ACTN)

HSP 1 Score: 85.1 bits (209), Expect = 1.350e-18
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 1
Query:    1 SGYSDTFETFNGGPGQLGIHGTNDPDTLGSNVSSGCIRLHNDDITRMVDEIKVTTGVPVEIL 186
            SG+S+TF+TF GGPGQLGIHGTNDPD+LGSNVSSGC+RL + DI  +V  + +  G PVE++
Sbjct:  199 SGFSETFQTFEGGPGQLGIHGTNDPDSLGSNVSSGCVRLADGDIEALVGLLPL--GTPVEVI 258          
BLAST of mRNA_M-pyrifera_M_contig74293.17596.1 vs. uniprot
Match: UPI000836FF2E (L,D-transpeptidase n=1 Tax=Nocardiopsis trehalosi TaxID=109329 RepID=UPI000836FF2E)

HSP 1 Score: 83.6 bits (205), Expect = 5.300e-18
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 SGYSDTFETFNGGPGQLGIHGTNDPDTLGSNVSSGCIRLHNDDITRMVDEIKVTTGVPVEIL 186
            SG+S+T ETF GGPGQL +HGTNDPD LG  +S GCIR+ NDDIT M + + V  G PVEIL
Sbjct:  200 SGHSETLETFAGGPGQLAVHGTNDPDALGQQISHGCIRVSNDDITWMAENLPV--GTPVEIL 259          
BLAST of mRNA_M-pyrifera_M_contig74293.17596.1 vs. uniprot
Match: A0A358A2E6_9ACTN (Murein L,D-transpeptidase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358A2E6_9ACTN)

HSP 1 Score: 77.4 bits (189), Expect = 1.170e-17
Identity = 34/48 (70.83%), Postives = 43/48 (89.58%), Query Frame = 1
Query:   43 GQLGIHGTNDPDTLGSNVSSGCIRLHNDDITRMVDEIKVTTGVPVEIL 186
            GQLGIHGTNDP +LG+NVSSGCIRLHNDDI+ +V++I +  GVPVE++
Sbjct:    2 GQLGIHGTNDPSSLGTNVSSGCIRLHNDDISLLVEQIGLPLGVPVEVI 49          
BLAST of mRNA_M-pyrifera_M_contig74293.17596.1 vs. uniprot
Match: UPI001E4C37BD (L,D-transpeptidase n=1 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI001E4C37BD)

HSP 1 Score: 81.3 bits (199), Expect = 4.500e-17
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 1
Query:    1 SGYSDTFETFNGGPGQLGIHGTNDPDTLGSNVSSGCIRLHNDDITRMVDEIKVTTGVPVEIL 186
            SG+SD   +FNGGPGQLGIHGTN P+ +GS VS+GCIR+HNDDI  + + + +  GVPVE++
Sbjct:  208 SGFSDVLTSFNGGPGQLGIHGTNRPELIGSKVSNGCIRMHNDDIVALSEILPL--GVPVEVI 267          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74293.17596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X5WS68_9ACTN1.040e-2575.81L,D-transpeptidase family protein n=1 Tax=Actinomy... [more]
A0A0R2QDD3_9ACTN5.910e-2470.97YkuD domain-containing protein n=1 Tax=Acidimicrob... [more]
A0A2E3TSA8_9ACTN2.950e-2370.97L,D-transpeptidase n=1 Tax=Ilumatobacter sp. TaxID... [more]
A0A7Y1TZB5_9ACTN4.350e-2272.13L,D-transpeptidase n=2 Tax=Acidimicrobiales bacter... [more]
A0A6J6ZBR0_9ZZZZ8.690e-2066.13Unannotated protein n=3 Tax=root TaxID=1 RepID=A0A... [more]
A0A2E8LCI2_9ACTN1.760e-1964.52L,D-transpeptidase n=4 Tax=Acidimicrobiaceae bacte... [more]
A0A7Y2DED3_9ACTN1.350e-1864.52L,D-transpeptidase n=1 Tax=Acidimicrobiales bacter... [more]
UPI000836FF2E5.300e-1864.52L,D-transpeptidase n=1 Tax=Nocardiopsis trehalosi ... [more]
A0A358A2E6_9ACTN1.170e-1770.83Murein L,D-transpeptidase (Fragment) n=1 Tax=Acidi... [more]
UPI001E4C37BD4.500e-1759.68L,D-transpeptidase n=1 Tax=Rhabdothermincola sp. E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74293contigM-pyrifera_M_contig74293:2..190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score77.0
Seed ortholog evalue3.4e-12
Seed eggNOG ortholog446468.Ndas_4669
Preferred nameykuD
KEGG koko:K19234
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ErfK YbiS YcfS YnhG family protein
EggNOG OGs2INDP@201174,4EIQY@85012,COG1376@1,COG1376@2
COG Functional cat.S
Best tax levelStreptosporangiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01002,ko01011
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816641.5020819-CDS-M-pyrifera_M_contig74293:1..1901622816641.5020819-CDS-M-pyrifera_M_contig74293:1..190Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74293 2..190 +
1692278093.8382788-CDS-M-pyrifera_M_contig74293:1..1901692278093.8382788-CDS-M-pyrifera_M_contig74293:1..190Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74293 2..190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74293.17596.1prot_M-pyrifera_M_contig74293.17596.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74293 2..190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74293.17596.1

>prot_M-pyrifera_M_contig74293.17596.1 ID=prot_M-pyrifera_M_contig74293.17596.1|Name=mRNA_M-pyrifera_M_contig74293.17596.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=63bp
SGYSDTFETFNGGPGQLGIHGTNDPDTLGSNVSSGCIRLHNDDITRMVDE
IKVTTGVPVEIL*
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mRNA from alignment at M-pyrifera_M_contig74293:2..190+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74293.17596.1 ID=mRNA_M-pyrifera_M_contig74293.17596.1|Name=mRNA_M-pyrifera_M_contig74293.17596.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=189bp|location=Sequence derived from alignment at M-pyrifera_M_contig74293:2..190+ (Macrocystis pyrifera P11B4 male)
TCGGGCTACTCCGACACCTTCGAGACCTTCAACGGCGGACCGGGCCAGCT CGGCATCCATGGCACCAACGATCCCGACACCCTCGGCAGCAATGTGTCGT CGGGCTGCATCCGGTTGCACAACGACGACATCACCCGGATGGTCGACGAG ATCAAGGTGACGACCGGCGTCCCCGTCGAGATTCTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74293:2..190+

>mRNA_M-pyrifera_M_contig74293.17596.1 ID=mRNA_M-pyrifera_M_contig74293.17596.1|Name=mRNA_M-pyrifera_M_contig74293.17596.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig74293:2..190+ (Macrocystis pyrifera P11B4 male)
TCGGGCTACTCCGACACCTTCGAGACCTTCAACGGCGGACCGGGCCAGCT
CGGCATCCATGGCACCAACGATCCCGACACCCTCGGCAGCAATGTGTCGT
CGGGCTGCATCCGGTTGCACAACGACGACATCACCCGGATGGTCGACGAG
ATCAAGGTGACGACCGGCGTCCCCGTCGAGATTCTCTGATCGGGCTACTC
CGACACCTTCGAGACCTTCAACGGCGGACCGGGCCAGCTCGGCATCCATG
GCACCAACGATCCCGACACCCTCGGCAGCAATGTGTCGTCGGGCTGCATC
CGGTTGCACAACGACGACATCACCCGGATGGTCGACGAGATCAAGGTGAC
GACCGGCGTCCCCGTCGAGATTCTCTGA
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