prot_M-pyrifera_M_contig73752.17477.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig73752.17477.1
Unique Nameprot_M-pyrifera_M_contig73752.17477.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length228
Homology
BLAST of mRNA_M-pyrifera_M_contig73752.17477.1 vs. uniprot
Match: A0A813BSL2_9DINO (DNA-directed RNA polymerase subunit beta n=3 Tax=Sar TaxID=2698737 RepID=A0A813BSL2_9DINO)

HSP 1 Score: 185 bits (469), Expect = 4.540e-50
Identity = 111/234 (47.44%), Postives = 146/234 (62.39%), Query Frame = 0
Query:    1 HVGSFDWFLEEGINLGVSALPERVFRLARGYGRVRLRVAGVEVQGVRPAGGGGGVVGSGFLGSRV-PRAFRESGRSYTAPLQVTVERSV-----EGAVRGSWGPWEGVTVSGGEMPVMVGSKGCVLRQLDDATRVKLGEEPSEVGGYFVSNGVERVVRMLQMPRRNYPLAVERGSFEKRGKRFSNRGVTVRSVRVDESAVTNTMHALKDGGAVVRFSLRRQEFFLPITLLLQAL 228
            HV SF++FLE G+ L V  +P R FRL  G  RVR+ +   EV        G      G    R+ P   RE G SY+APL V V RSV     +G+ +      +   +  GE+P+MVGS+ C L  +D A +    EE SE GGYF+ NG+ERVVR+LQMPRRNYP+A+ R S+ KRG+ +S + V VRSVR D+SA+T T+H L +GGA VRF+LRRQEFF+P  L+L+ L
Sbjct:  865 HVESFNFFLESGLGLAVDEIPARDFRLGPGGKRVRVWIESAEV--------GQPTKRDGSEDMRLMPAECRERGLSYSAPLNVVVCRSVLAPADDGSGKDVVVSTDSYPLRAGELPIMVGSQRCHLAGMDAAAKAAAHEEASEFGGYFICNGIERVVRLLQMPRRNYPMAITRSSYTKRGRLYSTQAVVVRSVRPDQSALTVTLHYLTNGGANVRFALRRQEFFVPAVLVLRCL 1090          
BLAST of mRNA_M-pyrifera_M_contig73752.17477.1 vs. uniprot
Match: A0A812YX28_9DINO (DNA-directed RNA polymerase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812YX28_9DINO)

HSP 1 Score: 160 bits (405), Expect = 1.230e-41
Identity = 97/229 (42.36%), Postives = 138/229 (60.26%), Query Frame = 0
Query:    1 HVGSFDWFLEEGINLGVSALPERVFRLARGYGRVRLRVAGVEVQGVRPAGGGGGVVGSGFLGSRV-PRAFRESGRSYTAPLQVTVERSVEGAVRGSWGPWEGVTVSGGEMPVMVGSKGCVLRQLDDATRVKLGEEPSEVGGYFVSNGVERVVRMLQMPRRNYPLAVERGSFEKRGKRFSNRGVTVRSVRVDESAVTNTMHALKDGGAVVRFSLRRQEFFLPITLLLQAL 228
            HVGSFD+ LEEG++L VS +  R FRL       R+ +   E+        GG         SR+ PR  RE G +Y  PL V + R +        GP E +     ++P+M+ SK C LR L      + GE+ SE GGYF+ NG+ERV+RMLQ+PRRN+ +A+ R SF  RG  ++++ V VR  R D+S+V+ T+H LK+G A +RFSLR+QEFF+P+ ++L+AL
Sbjct:   33 HVGSFDFLLEEGLSLAVSDIAPREFRLKEDGPVYRMWIESAEIGFPSKKEEGGD--------SRLFPRECRERGLTYGGPLVVNLRRQIGD------GPEERIRKVFSKVPIMLKSKRCRLRDLTPKQLAEAGEDASEFGGYFICNGIERVIRMLQIPRRNHIMALTRVSFANRGPMYTDKAVQVRCARPDQSSVSLTLHYLKNGDATLRFSLRKQEFFVPLIIVLKAL 247          
BLAST of mRNA_M-pyrifera_M_contig73752.17477.1 vs. uniprot
Match: A0A7S3HBR9_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBR9_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.080e-39
Identity = 96/232 (41.38%), Postives = 137/232 (59.05%), Query Frame = 0
Query:    1 HVGSFDWFLEEGINLGVSALPERVFRLARGYGRVRLRVAGVEVQGVRPAGGGGGVVGSGFLGSRVPRAFRESGRSY----TAPLQVTVERSVEGAVRGSWGPWEGVTVSGGEMPVMVGSKGCVLRQLDDATRVKLGEEPSEVGGYFVSNGVERVVRMLQMPRRNYPLAVERGSFEKRGKRFSNRGVTVRSVRVDESAVTNTMHALKDGGAVVRFSLRRQEFFLPITLLLQAL 228
            HV SFD+FLE G+   +  L    F LA    R++ + +  +V    P      ++   F     PR  RESG +Y    TA LQVT+  S E  +         + +  G++P+MVGS  C LR     T V + EE +EVGGYF+ NG+ERV+R+LQ+PRRN+  AVER SF+ RG+ +S++GV +R  R D ++VT TMH L +GGA +RF L++QEF LP+ L+ + L
Sbjct:   33 HVDSFDYFLEYGLEEAIYELTPMEFDLAPNL-RLKFQYSSAKVD---PPSKPDQLLDGAFT----PREARESGSTYAGATTAQLQVTINDSEEPMM---------MAIKMGDLPIMVGSDRCHLRGKSCDTLVAMKEEANEVGGYFILNGIERVIRLLQVPRRNHATAVERNSFKNRGQSYSDKGVMMRCTRKDNTSVTVTMHYLNNGGATLRFVLKKQEFLLPVILVAKCL 247          
BLAST of mRNA_M-pyrifera_M_contig73752.17477.1 vs. uniprot
Match: A0A6P5A2G4_BRABE (DNA-directed RNA polymerase subunit beta n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5A2G4_BRABE)

HSP 1 Score: 152 bits (385), Expect = 7.650e-39
Identity = 95/232 (40.95%), Postives = 138/232 (59.48%), Query Frame = 0
Query:    1 HVGSFDWFLEEGINLGVSALPERVFRLARGYGRVRLRVAGVEVQGVRPAGGGGGVVGSGFLGSRVPRAF----RESGRSYTAPLQVTVERSVEGAVRGSWGPWEGVTVSGGEMPVMVGSKGCVLRQLDDATRVKLGEEPSEVGGYFVSNGVERVVRMLQMPRRNYPLAVERGSFEKRGKRFSNRGVTVRSVRVDESAVTNTMHALKDGGAVVRFSLRRQEFFLPITLLLQAL 228
            HV SF+WFL EG++L V A+P   F L+ G    R+ +A V+     P       V  G   SR  + F    RE G +Y A LQ  +  SV+G  +GS      V    GE+P+MV S  C L +L  A  +K  EE  E+GGYF++NG+E+VVRML MPRRNYP+A+ R S++ RGK ++  GV++R V  D++A T  +H L +G   + F  ++++FF+PI ++L+AL
Sbjct:   38 HVESFNWFLREGLSLAVQAIPNLDFSLSNGR---RISLAYVDASVGVPT------VAQGNAFSRTLKVFPAECRERGTTYRAGLQARIAWSVDGVNQGS------VESMLGEIPLMVKSAHCNLSKLTPAELIKRHEEAEEMGGYFINNGIEKVVRMLVMPRRNYPMAIVRPSWKGRGKLYTEYGVSMRCVTKDQTAATIVLHYLTNGTVTLCFVYKKEQFFVPIVIILKAL 254          
BLAST of mRNA_M-pyrifera_M_contig73752.17477.1 vs. uniprot
Match: A0A6G0W8Q0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W8Q0_9STRA)

HSP 1 Score: 147 bits (372), Expect = 4.230e-37
Identity = 93/228 (40.79%), Postives = 134/228 (58.77%), Query Frame = 0
Query:    1 HVGSFDWFLEEGINLGVSALPERVFRLARGYGRVRLRVAGVEVQGVRPAGGGGGVVGSGFLGSRVPRAFRESGRSYTAPLQVTVERSVEGAVRGSWGPWEGVTVSGGEMPVMVGSKGCVLRQLDDATRVKLGEEPSEVGGYFVSNGVERVVRMLQMPRRNYPLAVERGSFEKRGKRFSNRGVTVRSVRVDESAVTNTMHALKDGGAVVRFSLRRQEFFLPITLLLQAL 228
            HV SFD+ ++EG++L V+++      +     ++ + +   ++      G       +G     +P   R+ G SYTAPL VT+ RS  G         E +  + G +P+MV S+ C L  +     VK  EE +E+GGYF+ NG ER VR+LQMPRR++ +AV RG+F KRG  +S+ GVT+R VR D+SAVT TMH L DG A VR  +R+QEF +P  LLL+AL
Sbjct:   42 HVASFDFMIKEGLDLAVASIAPMTIDVGHSS-KMNIWIESAQI------GYPTSDATNGQARLLLPSECRQRGISYTAPLIVTLARSFVGG-----STTEHIQRTVGHIPIMVRSQRCHLANMSPPELVKAREEANEMGGYFICNGNERCVRLLQMPRRHHIMAVRRGAFTKRGDLYSDIGVTMRCVRRDQSAVTLTMHYLHDGNATVRLGVRKQEFMVPAGLLLKAL 257          
BLAST of mRNA_M-pyrifera_M_contig73752.17477.1 vs. uniprot
Match: W4FT36_9STRA (DNA-directed RNA polymerase subunit beta n=9 Tax=Aphanomyces TaxID=100860 RepID=W4FT36_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.450e-36
Identity = 94/228 (41.23%), Postives = 135/228 (59.21%), Query Frame = 0
Query:    1 HVGSFDWFLEEGINLGVSALPERVFRLARGYGRVRLRVAGVEVQGVRPAGGGGGVVGSGFLGSRVPRAFRESGRSYTAPLQVTVERSVEGAVRGSWGPWEGVTVSGGEMPVMVGSKGCVLRQLDDATRVKLGEEPSEVGGYFVSNGVERVVRMLQMPRRNYPLAVERGSFEKRGKRFSNRGVTVRSVRVDESAVTNTMHALKDGGAVVRFSLRRQEFFLPITLLLQAL 228
            HV SF++ L EG++  V+++      +  G  ++ + +  V++ G   +   GG        + +P   R+ G SYTAPL VT+ RS  G         E +  + G +P+MV S+ C L  L     VK  EE +E+GGYF+ NG ER VR+LQMPRR++ +AV RG+F KRG  +S  GVT+R VR D+SAVT T+H L DG A +R  +R+QEF +P  LLL+AL
Sbjct:   42 HVDSFNFMLSEGLDYAVASILPLTIDVGHGN-KMTVWIDSVQI-GYPTSDATGG-----HSKTLLPAECRQRGISYTAPLIVTLARSFVGG-----STTEHLQRTVGHIPIMVRSQRCHLANLSPPELVKAREEANEMGGYFICNGNERCVRLLQMPRRHHIMAVRRGAFSKRGDLYSELGVTMRCVRRDQSAVTLTLHYLLDGNATIRLGVRKQEFMVPAGLLLKAL 257          
BLAST of mRNA_M-pyrifera_M_contig73752.17477.1 vs. uniprot
Match: A0A067CVJ7_SAPPC (DNA-directed RNA polymerase subunit beta n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CVJ7_SAPPC)

HSP 1 Score: 145 bits (367), Expect = 1.970e-36
Identity = 94/228 (41.23%), Postives = 135/228 (59.21%), Query Frame = 0
Query:    1 HVGSFDWFLEEGINLGVSALPERVFRLARGYGRVRLRVAGVEVQGVRPAGGGGGVVGSGFLGSRVPRAFRESGRSYTAPLQVTVERSVEGAVRGSWGPWEGVTVSGGEMPVMVGSKGCVLRQLDDATRVKLGEEPSEVGGYFVSNGVERVVRMLQMPRRNYPLAVERGSFEKRGKRFSNRGVTVRSVRVDESAVTNTMHALKDGGAVVRFSLRRQEFFLPITLLLQAL 228
            HV SFD+ LEEG++L V ++      L+   G        +E   +   G       +    + +P   R+ G SYTAPL VT+ RS  G+        E +  + G++P+MV SK C L  L     V+  EE +E+GGYF+ NG ER VR+LQMPRR+  +AV RG+F KRG  +S++GV +R VR D+SAVT T+H L DG A +RF ++++EF +P+ LLL+AL
Sbjct:   41 HVASFDYMLEEGLDLAVQSIAP----LSMDVGNSNKMTIWIESAQI---GFPTTDASNNHAKAMLPSECRQRGISYTAPLVVTLGRSFGGSAI------EHLQRTVGQIPIMVRSKRCHLAGLSPPELVQKREEANEMGGYFICNGNERCVRLLQMPRRHQLMAVTRGAFAKRGDLYSDKGVFMRCVRRDQSAVTMTLHYLLDGNATLRFGIQKKEFMVPVGLLLKAL 255          
BLAST of mRNA_M-pyrifera_M_contig73752.17477.1 vs. uniprot
Match: A0A3R7XZQ0_9STRA (DNA-directed RNA polymerase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7XZQ0_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.480e-36
Identity = 95/228 (41.67%), Postives = 134/228 (58.77%), Query Frame = 0
Query:    1 HVGSFDWFLEEGINLGVSALPERVFRLARGYGRVRLRVAGVEVQGVRPAGGGGGVVGSGFLGSRVPRAFRESGRSYTAPLQVTVERSVEGAVRGSWGPWEGVTVSGGEMPVMVGSKGCVLRQLDDATRVKLGEEPSEVGGYFVSNGVERVVRMLQMPRRNYPLAVERGSFEKRGKRFSNRGVTVRSVRVDESAVTNTMHALKDGGAVVRFSLRRQEFFLPITLLLQAL 228
            HV SF++ L EG++  V+++      +  G  ++ + +  V++ G   +   GG      L    P   R+ G SYTAPL VT+ RS  G         E +  + G +P+MV S+ C L  L     VK  EE +E+GGYF+ NG ER VR+LQMPRR++ +AV RG+F KRG  +S  GVT+R VR D+SAVT T+H L DG A +R  +R+QEF +P  LLL+AL
Sbjct:   42 HVDSFNFMLSEGLDYAVASILPLTIDVGHGN-KMTVWIDSVQI-GYPTSDATGGHSQKTLL----PAECRQRGISYTAPLIVTLARSFVGG-----STTEHLQRTVGHIPIMVRSQRCHLANLSPPELVKAREEANEMGGYFICNGNERCVRLLQMPRRHHIMAVRRGAFSKRGDLYSELGVTMRCVRRDQSAVTLTLHYLLDGNATIRLGVRKQEFMVPAGLLLKAL 258          
BLAST of mRNA_M-pyrifera_M_contig73752.17477.1 vs. uniprot
Match: A0A024U2C2_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024U2C2_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.710e-35
Identity = 92/228 (40.35%), Postives = 134/228 (58.77%), Query Frame = 0
Query:    1 HVGSFDWFLEEGINLGVSALPERVFRLARGYGRVRLRVAGVEVQGVRPAGGGGGVVGSGFLGSRVPRAFRESGRSYTAPLQVTVERSVEGAVRGSWGPWEGVTVSGGEMPVMVGSKGCVLRQLDDATRVKLGEEPSEVGGYFVSNGVERVVRMLQMPRRNYPLAVERGSFEKRGKRFSNRGVTVRSVRVDESAVTNTMHALKDGGAVVRFSLRRQEFFLPITLLLQAL 228
            HV SF++ L EG++  V+++      +     ++ + +  V++         GG        + +P   R+ G SYTAPL VT+ RS  G         E +  + G +P+MV S+ C L  L  A  V+  EE +E+GGYF+ NG ER VR+LQMPRR++ +AV RG+F KRG  +S  GVT+R VR D+SAVT T+H L DG A+VR  +R+QEF +P  LLL+A+
Sbjct:   43 HVDSFNFMLSEGLDHAVASILPLTIDVGHSN-KMTIWIDSVQIGYPTSDATHGG-----HAKTLLPTECRQRGISYTAPLIVTLARSFVGG-----STTEHLQRTVGHIPIMVRSQRCHLANLSPAELVQAHEEANEMGGYFICNGNERCVRLLQMPRRHHIMAVRRGAFSKRGDLYSELGVTMRCVRRDQSAVTLTLHYLLDGNAMVRLGVRKQEFMVPAGLLLKAM 259          
BLAST of mRNA_M-pyrifera_M_contig73752.17477.1 vs. uniprot
Match: A0A7R9BBY7_9CRUS (DNA-directed RNA polymerase subunit beta n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BBY7_9CRUS)

HSP 1 Score: 142 bits (359), Expect = 2.330e-35
Identity = 89/230 (38.70%), Postives = 134/230 (58.26%), Query Frame = 0
Query:    1 HVGSFDWFLEEGINLGVSALPERVFRLARGYGRVRLRVAGVEVQGVRPAGGGGGVVGSGFLGSR--VPRAFRESGRSYTAPLQVTVERSVEGAVRGSWGPWEGVTVSGGEMPVMVGSKGCVLRQLDDATRVKLGEEPSEVGGYFVSNGVERVVRMLQMPRRNYPLAVERGSFEKRGKRFSNRGVTVRSVRVDESAVTNTMHALKDGGAVVRFSLRRQEFFLPITLLLQAL 228
            H+ SFD  +  G+   V + P   F++      + L +    +     A G  GV G+G +  +  +P   R SG++YTAPL V++   ++G    S      +T + G +PVMV S  C L  L  A  V++GEE +E+GGYF+ NG E+++RML   RRNYPLA+ R ++  RGK FS+ GV VRSV  D+S+  N +H LKDG A + F+ RR+ FF+ + ++L+AL
Sbjct:  122 HIQSFDDMIRIGLREAVLSTPPVEFKVPPNGPTIGLHLDAASLGYPEVANGNVGV-GTGAVAKKKVLPAECRISGKTYTAPLHVSLRVVIDGEEAAS------LTQACGNVPVMVRSSRCHLAGLSPAQLVRVGEEENEIGGYFIVNGHEKLIRMLVATRRNYPLALRRPTWASRGKDFSDMGVLVRSVTEDQSSYNNVLHFLKDGSAKMMFAFRREMFFIKVGVILRAL 344          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73752.17477.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813BSL2_9DINO4.540e-5047.44DNA-directed RNA polymerase subunit beta n=3 Tax=S... [more]
A0A812YX28_9DINO1.230e-4142.36DNA-directed RNA polymerase n=1 Tax=Symbiodinium s... [more]
A0A7S3HBR9_9STRA1.080e-3941.38DNA-directed RNA polymerase (Fragment) n=2 Tax=Spu... [more]
A0A6P5A2G4_BRABE7.650e-3940.95DNA-directed RNA polymerase subunit beta n=4 Tax=B... [more]
A0A6G0W8Q0_9STRA4.230e-3740.79DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]
W4FT36_9STRA1.450e-3641.23DNA-directed RNA polymerase subunit beta n=9 Tax=A... [more]
A0A067CVJ7_SAPPC1.970e-3641.23DNA-directed RNA polymerase subunit beta n=4 Tax=S... [more]
A0A3R7XZQ0_9STRA2.480e-3641.67DNA-directed RNA polymerase n=1 Tax=Aphanomyces as... [more]
A0A024U2C2_9STRA1.710e-3540.35DNA-directed RNA polymerase subunit beta n=2 Tax=A... [more]
A0A7R9BBY7_9CRUS2.330e-3538.70DNA-directed RNA polymerase subunit beta n=1 Tax=N... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 65..155
e-value: 4.7E-16
score: 58.9
IPR037034RNA polymerase Rpb2, domain 2 superfamilyGENE3D3.90.1110.10coord: 160..228
e-value: 2.4E-22
score: 81.5
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 1..228
NoneNo IPR availablePANTHERPTHR20856:SF5DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2coord: 1..228
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..228

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73752contigM-pyrifera_M_contig73752:26..709 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73752.17477.1mRNA_M-pyrifera_M_contig73752.17477.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig73752 26..709 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig73752.17477.1 ID=prot_M-pyrifera_M_contig73752.17477.1|Name=mRNA_M-pyrifera_M_contig73752.17477.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=228bp
HVGSFDWFLEEGINLGVSALPERVFRLARGYGRVRLRVAGVEVQGVRPAG
GGGGVVGSGFLGSRVPRAFRESGRSYTAPLQVTVERSVEGAVRGSWGPWE
GVTVSGGEMPVMVGSKGCVLRQLDDATRVKLGEEPSEVGGYFVSNGVERV
VRMLQMPRRNYPLAVERGSFEKRGKRFSNRGVTVRSVRVDESAVTNTMHA
LKDGGAVVRFSLRRQEFFLPITLLLQAL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007644RNA_pol_bsu_protrusion
IPR037034RNA_pol_Rpb2_2_sf
IPR015712DNA-dir_RNA_pol_su2