mRNA_M-pyrifera_M_contig73752.17477.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73752.17477.1
Unique NamemRNA_M-pyrifera_M_contig73752.17477.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig73752.17477.1 vs. uniprot
Match: A0A813BSL2_9DINO (DNA-directed RNA polymerase subunit beta n=3 Tax=Sar TaxID=2698737 RepID=A0A813BSL2_9DINO)

HSP 1 Score: 185 bits (469), Expect = 4.540e-50
Identity = 111/234 (47.44%), Postives = 146/234 (62.39%), Query Frame = 1
Query:    1 HVGSFDWFLEEGINLGVSALPERVFRLARGYGRVRLRVAGVEVQGVRPAGGGGGVVGSGFLGSRV-PRAFRESGRSYTAPLQVTVERSV-----EGAVRGSWGPWEGVTVSGGEMPVMVGSKGCVLRQLDDATRVKLGEEPSEVGGYFVSNGVERVVRMLQMPRRNYPLAVERGSFEKRGKRFSNRGVTVRSVRVDESAVTNTMHALKDGGAVVRFSLRRQEFFLPITLLLQAL 684
            HV SF++FLE G+ L V  +P R FRL  G  RVR+ +   EV        G      G    R+ P   RE G SY+APL V V RSV     +G+ +      +   +  GE+P+MVGS+ C L  +D A +    EE SE GGYF+ NG+ERVVR+LQMPRRNYP+A+ R S+ KRG+ +S + V VRSVR D+SA+T T+H L +GGA VRF+LRRQEFF+P  L+L+ L
Sbjct:  865 HVESFNFFLESGLGLAVDEIPARDFRLGPGGKRVRVWIESAEV--------GQPTKRDGSEDMRLMPAECRERGLSYSAPLNVVVCRSVLAPADDGSGKDVVVSTDSYPLRAGELPIMVGSQRCHLAGMDAAAKAAAHEEASEFGGYFICNGIERVVRLLQMPRRNYPMAITRSSYTKRGRLYSTQAVVVRSVRPDQSALTVTLHYLTNGGANVRFALRRQEFFVPAVLVLRCL 1090          
BLAST of mRNA_M-pyrifera_M_contig73752.17477.1 vs. uniprot
Match: A0A812YX28_9DINO (DNA-directed RNA polymerase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812YX28_9DINO)

HSP 1 Score: 160 bits (405), Expect = 1.230e-41
Identity = 97/229 (42.36%), Postives = 138/229 (60.26%), Query Frame = 1
Query:    1 HVGSFDWFLEEGINLGVSALPERVFRLARGYGRVRLRVAGVEVQGVRPAGGGGGVVGSGFLGSRV-PRAFRESGRSYTAPLQVTVERSVEGAVRGSWGPWEGVTVSGGEMPVMVGSKGCVLRQLDDATRVKLGEEPSEVGGYFVSNGVERVVRMLQMPRRNYPLAVERGSFEKRGKRFSNRGVTVRSVRVDESAVTNTMHALKDGGAVVRFSLRRQEFFLPITLLLQAL 684
            HVGSFD+ LEEG++L VS +  R FRL       R+ +   E+        GG         SR+ PR  RE G +Y  PL V + R +        GP E +     ++P+M+ SK C LR L      + GE+ SE GGYF+ NG+ERV+RMLQ+PRRN+ +A+ R SF  RG  ++++ V VR  R D+S+V+ T+H LK+G A +RFSLR+QEFF+P+ ++L+AL
Sbjct:   33 HVGSFDFLLEEGLSLAVSDIAPREFRLKEDGPVYRMWIESAEIGFPSKKEEGGD--------SRLFPRECRERGLTYGGPLVVNLRRQIGD------GPEERIRKVFSKVPIMLKSKRCRLRDLTPKQLAEAGEDASEFGGYFICNGIERVIRMLQIPRRNHIMALTRVSFANRGPMYTDKAVQVRCARPDQSSVSLTLHYLKNGDATLRFSLRKQEFFVPLIIVLKAL 247          
BLAST of mRNA_M-pyrifera_M_contig73752.17477.1 vs. uniprot
Match: A0A7S3HBR9_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBR9_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.080e-39
Identity = 96/232 (41.38%), Postives = 137/232 (59.05%), Query Frame = 1
Query:    1 HVGSFDWFLEEGINLGVSALPERVFRLARGYGRVRLRVAGVEVQGVRPAGGGGGVVGSGFLGSRVPRAFRESGRSY----TAPLQVTVERSVEGAVRGSWGPWEGVTVSGGEMPVMVGSKGCVLRQLDDATRVKLGEEPSEVGGYFVSNGVERVVRMLQMPRRNYPLAVERGSFEKRGKRFSNRGVTVRSVRVDESAVTNTMHALKDGGAVVRFSLRRQEFFLPITLLLQAL 684
            HV SFD+FLE G+   +  L    F LA    R++ + +  +V    P      ++   F     PR  RESG +Y    TA LQVT+  S E  +         + +  G++P+MVGS  C LR     T V + EE +EVGGYF+ NG+ERV+R+LQ+PRRN+  AVER SF+ RG+ +S++GV +R  R D ++VT TMH L +GGA +RF L++QEF LP+ L+ + L
Sbjct:   33 HVDSFDYFLEYGLEEAIYELTPMEFDLAPNL-RLKFQYSSAKVD---PPSKPDQLLDGAFT----PREARESGSTYAGATTAQLQVTINDSEEPMM---------MAIKMGDLPIMVGSDRCHLRGKSCDTLVAMKEEANEVGGYFILNGIERVIRLLQVPRRNHATAVERNSFKNRGQSYSDKGVMMRCTRKDNTSVTVTMHYLNNGGATLRFVLKKQEFLLPVILVAKCL 247          
BLAST of mRNA_M-pyrifera_M_contig73752.17477.1 vs. uniprot
Match: A0A6P5A2G4_BRABE (DNA-directed RNA polymerase subunit beta n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5A2G4_BRABE)

HSP 1 Score: 152 bits (385), Expect = 7.650e-39
Identity = 95/232 (40.95%), Postives = 138/232 (59.48%), Query Frame = 1
Query:    1 HVGSFDWFLEEGINLGVSALPERVFRLARGYGRVRLRVAGVEVQGVRPAGGGGGVVGSGFLGSRVPRAF----RESGRSYTAPLQVTVERSVEGAVRGSWGPWEGVTVSGGEMPVMVGSKGCVLRQLDDATRVKLGEEPSEVGGYFVSNGVERVVRMLQMPRRNYPLAVERGSFEKRGKRFSNRGVTVRSVRVDESAVTNTMHALKDGGAVVRFSLRRQEFFLPITLLLQAL 684
            HV SF+WFL EG++L V A+P   F L+ G    R+ +A V+     P       V  G   SR  + F    RE G +Y A LQ  +  SV+G  +GS      V    GE+P+MV S  C L +L  A  +K  EE  E+GGYF++NG+E+VVRML MPRRNYP+A+ R S++ RGK ++  GV++R V  D++A T  +H L +G   + F  ++++FF+PI ++L+AL
Sbjct:   38 HVESFNWFLREGLSLAVQAIPNLDFSLSNGR---RISLAYVDASVGVPT------VAQGNAFSRTLKVFPAECRERGTTYRAGLQARIAWSVDGVNQGS------VESMLGEIPLMVKSAHCNLSKLTPAELIKRHEEAEEMGGYFINNGIEKVVRMLVMPRRNYPMAIVRPSWKGRGKLYTEYGVSMRCVTKDQTAATIVLHYLTNGTVTLCFVYKKEQFFVPIVIILKAL 254          
BLAST of mRNA_M-pyrifera_M_contig73752.17477.1 vs. uniprot
Match: A0A6G0W8Q0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W8Q0_9STRA)

HSP 1 Score: 147 bits (372), Expect = 4.230e-37
Identity = 93/228 (40.79%), Postives = 134/228 (58.77%), Query Frame = 1
Query:    1 HVGSFDWFLEEGINLGVSALPERVFRLARGYGRVRLRVAGVEVQGVRPAGGGGGVVGSGFLGSRVPRAFRESGRSYTAPLQVTVERSVEGAVRGSWGPWEGVTVSGGEMPVMVGSKGCVLRQLDDATRVKLGEEPSEVGGYFVSNGVERVVRMLQMPRRNYPLAVERGSFEKRGKRFSNRGVTVRSVRVDESAVTNTMHALKDGGAVVRFSLRRQEFFLPITLLLQAL 684
            HV SFD+ ++EG++L V+++      +     ++ + +   ++      G       +G     +P   R+ G SYTAPL VT+ RS  G         E +  + G +P+MV S+ C L  +     VK  EE +E+GGYF+ NG ER VR+LQMPRR++ +AV RG+F KRG  +S+ GVT+R VR D+SAVT TMH L DG A VR  +R+QEF +P  LLL+AL
Sbjct:   42 HVASFDFMIKEGLDLAVASIAPMTIDVGHSS-KMNIWIESAQI------GYPTSDATNGQARLLLPSECRQRGISYTAPLIVTLARSFVGG-----STTEHIQRTVGHIPIMVRSQRCHLANMSPPELVKAREEANEMGGYFICNGNERCVRLLQMPRRHHIMAVRRGAFTKRGDLYSDIGVTMRCVRRDQSAVTLTMHYLHDGNATVRLGVRKQEFMVPAGLLLKAL 257          
BLAST of mRNA_M-pyrifera_M_contig73752.17477.1 vs. uniprot
Match: W4FT36_9STRA (DNA-directed RNA polymerase subunit beta n=9 Tax=Aphanomyces TaxID=100860 RepID=W4FT36_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.450e-36
Identity = 94/228 (41.23%), Postives = 135/228 (59.21%), Query Frame = 1
Query:    1 HVGSFDWFLEEGINLGVSALPERVFRLARGYGRVRLRVAGVEVQGVRPAGGGGGVVGSGFLGSRVPRAFRESGRSYTAPLQVTVERSVEGAVRGSWGPWEGVTVSGGEMPVMVGSKGCVLRQLDDATRVKLGEEPSEVGGYFVSNGVERVVRMLQMPRRNYPLAVERGSFEKRGKRFSNRGVTVRSVRVDESAVTNTMHALKDGGAVVRFSLRRQEFFLPITLLLQAL 684
            HV SF++ L EG++  V+++      +  G  ++ + +  V++ G   +   GG        + +P   R+ G SYTAPL VT+ RS  G         E +  + G +P+MV S+ C L  L     VK  EE +E+GGYF+ NG ER VR+LQMPRR++ +AV RG+F KRG  +S  GVT+R VR D+SAVT T+H L DG A +R  +R+QEF +P  LLL+AL
Sbjct:   42 HVDSFNFMLSEGLDYAVASILPLTIDVGHGN-KMTVWIDSVQI-GYPTSDATGG-----HSKTLLPAECRQRGISYTAPLIVTLARSFVGG-----STTEHLQRTVGHIPIMVRSQRCHLANLSPPELVKAREEANEMGGYFICNGNERCVRLLQMPRRHHIMAVRRGAFSKRGDLYSELGVTMRCVRRDQSAVTLTLHYLLDGNATIRLGVRKQEFMVPAGLLLKAL 257          
BLAST of mRNA_M-pyrifera_M_contig73752.17477.1 vs. uniprot
Match: A0A067CVJ7_SAPPC (DNA-directed RNA polymerase subunit beta n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CVJ7_SAPPC)

HSP 1 Score: 145 bits (367), Expect = 1.970e-36
Identity = 94/228 (41.23%), Postives = 135/228 (59.21%), Query Frame = 1
Query:    1 HVGSFDWFLEEGINLGVSALPERVFRLARGYGRVRLRVAGVEVQGVRPAGGGGGVVGSGFLGSRVPRAFRESGRSYTAPLQVTVERSVEGAVRGSWGPWEGVTVSGGEMPVMVGSKGCVLRQLDDATRVKLGEEPSEVGGYFVSNGVERVVRMLQMPRRNYPLAVERGSFEKRGKRFSNRGVTVRSVRVDESAVTNTMHALKDGGAVVRFSLRRQEFFLPITLLLQAL 684
            HV SFD+ LEEG++L V ++      L+   G        +E   +   G       +    + +P   R+ G SYTAPL VT+ RS  G+        E +  + G++P+MV SK C L  L     V+  EE +E+GGYF+ NG ER VR+LQMPRR+  +AV RG+F KRG  +S++GV +R VR D+SAVT T+H L DG A +RF ++++EF +P+ LLL+AL
Sbjct:   41 HVASFDYMLEEGLDLAVQSIAP----LSMDVGNSNKMTIWIESAQI---GFPTTDASNNHAKAMLPSECRQRGISYTAPLVVTLGRSFGGSAI------EHLQRTVGQIPIMVRSKRCHLAGLSPPELVQKREEANEMGGYFICNGNERCVRLLQMPRRHQLMAVTRGAFAKRGDLYSDKGVFMRCVRRDQSAVTMTLHYLLDGNATLRFGIQKKEFMVPVGLLLKAL 255          
BLAST of mRNA_M-pyrifera_M_contig73752.17477.1 vs. uniprot
Match: A0A3R7XZQ0_9STRA (DNA-directed RNA polymerase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7XZQ0_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.480e-36
Identity = 95/228 (41.67%), Postives = 134/228 (58.77%), Query Frame = 1
Query:    1 HVGSFDWFLEEGINLGVSALPERVFRLARGYGRVRLRVAGVEVQGVRPAGGGGGVVGSGFLGSRVPRAFRESGRSYTAPLQVTVERSVEGAVRGSWGPWEGVTVSGGEMPVMVGSKGCVLRQLDDATRVKLGEEPSEVGGYFVSNGVERVVRMLQMPRRNYPLAVERGSFEKRGKRFSNRGVTVRSVRVDESAVTNTMHALKDGGAVVRFSLRRQEFFLPITLLLQAL 684
            HV SF++ L EG++  V+++      +  G  ++ + +  V++ G   +   GG      L    P   R+ G SYTAPL VT+ RS  G         E +  + G +P+MV S+ C L  L     VK  EE +E+GGYF+ NG ER VR+LQMPRR++ +AV RG+F KRG  +S  GVT+R VR D+SAVT T+H L DG A +R  +R+QEF +P  LLL+AL
Sbjct:   42 HVDSFNFMLSEGLDYAVASILPLTIDVGHGN-KMTVWIDSVQI-GYPTSDATGGHSQKTLL----PAECRQRGISYTAPLIVTLARSFVGG-----STTEHLQRTVGHIPIMVRSQRCHLANLSPPELVKAREEANEMGGYFICNGNERCVRLLQMPRRHHIMAVRRGAFSKRGDLYSELGVTMRCVRRDQSAVTLTLHYLLDGNATIRLGVRKQEFMVPAGLLLKAL 258          
BLAST of mRNA_M-pyrifera_M_contig73752.17477.1 vs. uniprot
Match: A0A024U2C2_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024U2C2_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.710e-35
Identity = 92/228 (40.35%), Postives = 134/228 (58.77%), Query Frame = 1
Query:    1 HVGSFDWFLEEGINLGVSALPERVFRLARGYGRVRLRVAGVEVQGVRPAGGGGGVVGSGFLGSRVPRAFRESGRSYTAPLQVTVERSVEGAVRGSWGPWEGVTVSGGEMPVMVGSKGCVLRQLDDATRVKLGEEPSEVGGYFVSNGVERVVRMLQMPRRNYPLAVERGSFEKRGKRFSNRGVTVRSVRVDESAVTNTMHALKDGGAVVRFSLRRQEFFLPITLLLQAL 684
            HV SF++ L EG++  V+++      +     ++ + +  V++         GG        + +P   R+ G SYTAPL VT+ RS  G         E +  + G +P+MV S+ C L  L  A  V+  EE +E+GGYF+ NG ER VR+LQMPRR++ +AV RG+F KRG  +S  GVT+R VR D+SAVT T+H L DG A+VR  +R+QEF +P  LLL+A+
Sbjct:   43 HVDSFNFMLSEGLDHAVASILPLTIDVGHSN-KMTIWIDSVQIGYPTSDATHGG-----HAKTLLPTECRQRGISYTAPLIVTLARSFVGG-----STTEHLQRTVGHIPIMVRSQRCHLANLSPAELVQAHEEANEMGGYFICNGNERCVRLLQMPRRHHIMAVRRGAFSKRGDLYSELGVTMRCVRRDQSAVTLTLHYLLDGNAMVRLGVRKQEFMVPAGLLLKAM 259          
BLAST of mRNA_M-pyrifera_M_contig73752.17477.1 vs. uniprot
Match: A0A7R9BBY7_9CRUS (DNA-directed RNA polymerase subunit beta n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BBY7_9CRUS)

HSP 1 Score: 142 bits (359), Expect = 2.330e-35
Identity = 89/230 (38.70%), Postives = 134/230 (58.26%), Query Frame = 1
Query:    1 HVGSFDWFLEEGINLGVSALPERVFRLARGYGRVRLRVAGVEVQGVRPAGGGGGVVGSGFLGSR--VPRAFRESGRSYTAPLQVTVERSVEGAVRGSWGPWEGVTVSGGEMPVMVGSKGCVLRQLDDATRVKLGEEPSEVGGYFVSNGVERVVRMLQMPRRNYPLAVERGSFEKRGKRFSNRGVTVRSVRVDESAVTNTMHALKDGGAVVRFSLRRQEFFLPITLLLQAL 684
            H+ SFD  +  G+   V + P   F++      + L +    +     A G  GV G+G +  +  +P   R SG++YTAPL V++   ++G    S      +T + G +PVMV S  C L  L  A  V++GEE +E+GGYF+ NG E+++RML   RRNYPLA+ R ++  RGK FS+ GV VRSV  D+S+  N +H LKDG A + F+ RR+ FF+ + ++L+AL
Sbjct:  122 HIQSFDDMIRIGLREAVLSTPPVEFKVPPNGPTIGLHLDAASLGYPEVANGNVGV-GTGAVAKKKVLPAECRISGKTYTAPLHVSLRVVIDGEEAAS------LTQACGNVPVMVRSSRCHLAGLSPAQLVRVGEEENEIGGYFIVNGHEKLIRMLVATRRNYPLALRRPTWASRGKDFSDMGVLVRSVTEDQSSYNNVLHFLKDGSAKMMFAFRREMFFIKVGVILRAL 344          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73752.17477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813BSL2_9DINO4.540e-5047.44DNA-directed RNA polymerase subunit beta n=3 Tax=S... [more]
A0A812YX28_9DINO1.230e-4142.36DNA-directed RNA polymerase n=1 Tax=Symbiodinium s... [more]
A0A7S3HBR9_9STRA1.080e-3941.38DNA-directed RNA polymerase (Fragment) n=2 Tax=Spu... [more]
A0A6P5A2G4_BRABE7.650e-3940.95DNA-directed RNA polymerase subunit beta n=4 Tax=B... [more]
A0A6G0W8Q0_9STRA4.230e-3740.79DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]
W4FT36_9STRA1.450e-3641.23DNA-directed RNA polymerase subunit beta n=9 Tax=A... [more]
A0A067CVJ7_SAPPC1.970e-3641.23DNA-directed RNA polymerase subunit beta n=4 Tax=S... [more]
A0A3R7XZQ0_9STRA2.480e-3641.67DNA-directed RNA polymerase n=1 Tax=Aphanomyces as... [more]
A0A024U2C2_9STRA1.710e-3540.35DNA-directed RNA polymerase subunit beta n=2 Tax=A... [more]
A0A7R9BBY7_9CRUS2.330e-3538.70DNA-directed RNA polymerase subunit beta n=1 Tax=N... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73752contigM-pyrifera_M_contig73752:26..709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.6
Seed ortholog evalue8.9e-34
Seed eggNOG ortholog42099.EPrPV00000016065
Preferred namePOLR1B
KEGG rclassRC02795
KEGG koko:K03002
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00182
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006360,GO:0006361,GO:0006363,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007000,GO:0007275,GO:0007565,GO:0007566,GO:0008150,GO:0008152,GO:0008361,GO:0009058,GO:0009059,GO:0009303,GO:0009553,GO:0009561,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016740,GO:0016772,GO:0016779,GO:0017126,GO:0018130,GO:0019222,GO:0019438,GO:0022414,GO:0030880,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032535,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0044706,GO:0045793,GO:0045815,GO:0046483,GO:0048229,GO:0048518,GO:0048856,GO:0050789,GO:0051704,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090066,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA-directed RNA polymerase
EggNOG OGs1ME3G@121069,COG0085@1,KOG0216@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021
Exons1
Model size684
Cds size684
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816635.0187426-CDS-M-pyrifera_M_contig73752:25..7091622816635.0187426-CDS-M-pyrifera_M_contig73752:25..709Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73752 26..709 -
1692278090.0329294-CDS-M-pyrifera_M_contig73752:25..7091692278090.0329294-CDS-M-pyrifera_M_contig73752:25..709Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73752 26..709 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73752.17477.1prot_M-pyrifera_M_contig73752.17477.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73752 26..709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73752.17477.1

>prot_M-pyrifera_M_contig73752.17477.1 ID=prot_M-pyrifera_M_contig73752.17477.1|Name=mRNA_M-pyrifera_M_contig73752.17477.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=228bp
HVGSFDWFLEEGINLGVSALPERVFRLARGYGRVRLRVAGVEVQGVRPAG
GGGGVVGSGFLGSRVPRAFRESGRSYTAPLQVTVERSVEGAVRGSWGPWE
GVTVSGGEMPVMVGSKGCVLRQLDDATRVKLGEEPSEVGGYFVSNGVERV
VRMLQMPRRNYPLAVERGSFEKRGKRFSNRGVTVRSVRVDESAVTNTMHA
LKDGGAVVRFSLRRQEFFLPITLLLQAL
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mRNA from alignment at M-pyrifera_M_contig73752:26..709-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73752.17477.1 ID=mRNA_M-pyrifera_M_contig73752.17477.1|Name=mRNA_M-pyrifera_M_contig73752.17477.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig73752:26..709- (Macrocystis pyrifera P11B4 male)
CACGTGGGCTCGTTCGACTGGTTTCTGGAGGAGGGCATCAATTTGGGTGT TTCTGCGCTGCCTGAGCGGGTGTTTCGTCTGGCGCGCGGGTACGGCCGCG TTCGGCTGCGCGTTGCGGGGGTGGAGGTGCAAGGGGTGCGTCCAGCAGGG GGAGGAGGCGGGGTCGTGGGGTCCGGCTTTTTGGGGTCGAGGGTGCCGCG GGCATTTCGCGAGAGTGGGCGGAGTTACACGGCTCCTCTGCAGGTGACGG TGGAGCGGAGCGTGGAGGGCGCTGTGCGTGGGTCGTGGGGCCCCTGGGAG GGCGTCACGGTGTCAGGTGGTGAAATGCCGGTGATGGTGGGCAGCAAAGG GTGTGTGTTGCGGCAACTAGATGATGCCACTCGCGTGAAATTGGGCGAGG AACCGAGTGAGGTGGGCGGGTACTTTGTATCGAACGGTGTGGAGCGTGTG GTGAGGATGTTGCAAATGCCCAGGCGAAATTACCCGCTTGCCGTGGAAAG AGGCAGTTTTGAGAAACGAGGGAAACGGTTCTCCAACAGAGGAGTGACAG TGAGGAGTGTGCGGGTGGACGAGAGTGCCGTGACGAACACCATGCATGCG CTAAAGGACGGAGGGGCTGTGGTTCGATTTTCGCTGCGTCGCCAGGAATT CTTCCTCCCCATCACACTCCTCCTCCAAGCACTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73752:26..709-

>mRNA_M-pyrifera_M_contig73752.17477.1 ID=mRNA_M-pyrifera_M_contig73752.17477.1|Name=mRNA_M-pyrifera_M_contig73752.17477.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1368bp|location=Sequence derived from alignment at M-pyrifera_M_contig73752:26..709- (Macrocystis pyrifera P11B4 male)
CACGTGGGCTCGTTCGACTGGTTTCTGGAGGAGGGCATCAATTTGGGTGT
TTCTGCGCTGCCTGAGCGGGTGTTTCGTCTGGCGCGCGGGTACGGCCGCG
TTCGGCTGCGCGTTGCGGGGGTGGAGGTGCAAGGGGTGCGTCCAGCAGGG
GGAGGAGGCGGGGTCGTGGGGTCCGGCTTTTTGGGGTCGAGGGTGCCGCG
GGCATTTCGCGAGAGTGGGCGGAGTTACACGGCTCCTCTGCAGGTGACGG
TGGAGCGGAGCGTGGAGGGCGCTGTGCGTGGGTCGTGGGGCCCCTGGGAG
GGCGTCACGGTGTCAGGTGGTGAAATGCCGGTGATGGTGGGCAGCAAAGG
GTGTGTGTTGCGGCAACTAGATGATGCCACTCGCGTGAAATTGGGCGAGG
AACCGAGTGAGGTGGGCGGGTACTTTGTATCGAACGGTGTGGAGCGTGTG
GTGAGGATGTTGCAAATGCCCAGGCGAAATTACCCGCTTGCCGTGGAAAG
AGGCAGTTTTGAGAAACGAGGGAAACGGTTCTCCAACAGAGGAGTGACAG
TGAGGAGTGTGCGGGTGGACGAGAGTGCCGTGACGAACACCATGCATGCG
CTAAAGGACGGAGGGGCTGTGGTTCGATTTTCGCTGCGTCGCCAGGAATT
CTTCCTCCCCATCACACTCCTCCTCCAAGCACTCCACGTGGGCTCGTTCG
ACTGGTTTCTGGAGGAGGGCATCAATTTGGGTGTTTCTGCGCTGCCTGAG
CGGGTGTTTCGTCTGGCGCGCGGGTACGGCCGCGTTCGGCTGCGCGTTGC
GGGGGTGGAGGTGCAAGGGGTGCGTCCAGCAGGGGGAGGAGGCGGGGTCG
TGGGGTCCGGCTTTTTGGGGTCGAGGGTGCCGCGGGCATTTCGCGAGAGT
GGGCGGAGTTACACGGCTCCTCTGCAGGTGACGGTGGAGCGGAGCGTGGA
GGGCGCTGTGCGTGGGTCGTGGGGCCCCTGGGAGGGCGTCACGGTGTCAG
GTGGTGAAATGCCGGTGATGGTGGGCAGCAAAGGGTGTGTGTTGCGGCAA
CTAGATGATGCCACTCGCGTGAAATTGGGCGAGGAACCGAGTGAGGTGGG
CGGGTACTTTGTATCGAACGGTGTGGAGCGTGTGGTGAGGATGTTGCAAA
TGCCCAGGCGAAATTACCCGCTTGCCGTGGAAAGAGGCAGTTTTGAGAAA
CGAGGGAAACGGTTCTCCAACAGAGGAGTGACAGTGAGGAGTGTGCGGGT
GGACGAGAGTGCCGTGACGAACACCATGCATGCGCTAAAGGACGGAGGGG
CTGTGGTTCGATTTTCGCTGCGTCGCCAGGAATTCTTCCTCCCCATCACA
CTCCTCCTCCAAGCACTC
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