prot_M-pyrifera_M_contig72790.17288.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig72790.17288.1
Unique Name	prot_M-pyrifera_M_contig72790.17288.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	73

Homology

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BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot
Match: A0A1Y3BYD7_HELAN (Putative cytochrome b6/f complex, subunit IV n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A1Y3BYD7_HELAN)

HSP 1 Score: 132 bits (332), Expect = 6.370e-39
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 0

Query:    1 RTVPNKLLVVLLMASVLAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 72
            RTVPNKLL VLLM SV AGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct:   11 RTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 82

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BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot
Match: A0A8K0ZAM9_9ASTR (Cytochrome b6/f complex subunit IV n=1 Tax=Heteroplexis impressinervia TaxID=2789018 RepID=A0A8K0ZAM9_9ASTR)

HSP 1 Score: 132 bits (332), Expect = 7.160e-39
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 0

Query:    1 RTVPNKLLVVLLMASVLAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 72
            RTVPNKLL VLLM SV AGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct:   15 RTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 86

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BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot
Match: A0A4Y5RT86_COROF (PetD n=1 Tax=Cornus officinalis TaxID=16906 RepID=A0A4Y5RT86_COROF)

HSP 1 Score: 132 bits (332), Expect = 1.150e-38
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 0

Query:    1 RTVPNKLLVVLLMASVLAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 72
            RTVPNKLL VLLM SV AGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct:   31 RTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 102

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BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot
Match: A0A0V0GVQ2_SOLCH (Putative cytochrome b6/f complex subunit IV-like n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GVQ2_SOLCH)

HSP 1 Score: 132 bits (332), Expect = 1.420e-38
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 0

Query:    1 RTVPNKLLVVLLMASVLAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 72
            RTVPNKLL VLLM SV AGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct:   29 RTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 100

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BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot
Match: A0A251T7T5_HELAN (Putative cytochrome b6/f complex, subunit IV n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251T7T5_HELAN)

HSP 1 Score: 132 bits (332), Expect = 3.020e-38
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 0

Query:    1 RTVPNKLLVVLLMASVLAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 72
            RTVPNKLL VLLM SV AGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct:   58 RTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 129

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BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot
Match: A0A5D2P1N6_GOSTO (CYTB_CTER domain-containing protein n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A5D2P1N6_GOSTO)

HSP 1 Score: 132 bits (332), Expect = 3.510e-38
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 0

Query:    1 RTVPNKLLVVLLMASVLAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 72
            RTVPNKLL VLLM SV AGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct:   68 RTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 139

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BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot
Match: A0A6N2AEJ6_SOLCI (CYTB_CTER domain-containing protein n=1 Tax=Solanum chilense TaxID=4083 RepID=A0A6N2AEJ6_SOLCI)

HSP 1 Score: 132 bits (332), Expect = 3.510e-38
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 0

Query:    1 RTVPNKLLVVLLMASVLAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 72
            RTVPNKLL VLLM SV AGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct:   68 RTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 139

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BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot
Match: UPI001FCCD08A (cytochrome b6/f complex subunit IV n=1 Tax=Solanum ternatum TaxID=743523 RepID=UPI001FCCD08A)

HSP 1 Score: 132 bits (332), Expect = 4.200e-38
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 0

Query:    1 RTVPNKLLVVLLMASVLAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 72
            RTVPNKLL VLLM SV AGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct:   74 RTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 145

[Close]

BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot
Match: A0A6G8QRT5_9ROSA (Cytochrome b6-f complex subunit 4 n=1 Tax=Rubus amabilis TaxID=616954 RepID=A0A6G8QRT5_9ROSA)

HSP 1 Score: 132 bits (332), Expect = 4.600e-38
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 0

Query:    1 RTVPNKLLVVLLMASVLAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 72
            RTVPNKLL VLLM SV AGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct:   77 RTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 148

[Close]

BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot
Match: A0A0D3RVR9_9LAMI (Cytochrome b6-f complex subunit 4 n=4 Tax=Pentapetalae TaxID=1437201 RepID=A0A0D3RVR9_9LAMI)

HSP 1 Score: 132 bits (332), Expect = 4.600e-38
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 0

Query:    1 RTVPNKLLVVLLMASVLAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 72
            RTVPNKLL VLLM SV AGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct:   77 RTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 148

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1Y3BYD7_HELAN	6.370e-39	95.83	Putative cytochrome b6/f complex, subunit IV n=2 T...	[more]
A0A8K0ZAM9_9ASTR	7.160e-39	95.83	Cytochrome b6/f complex subunit IV n=1 Tax=Heterop...	[more]
A0A4Y5RT86_COROF	1.150e-38	95.83	PetD n=1 Tax=Cornus officinalis TaxID=16906 RepID=...	[more]
A0A0V0GVQ2_SOLCH	1.420e-38	95.83	Putative cytochrome b6/f complex subunit IV-like n...	[more]
A0A251T7T5_HELAN	3.020e-38	95.83	Putative cytochrome b6/f complex, subunit IV n=1 T...	[more]
A0A5D2P1N6_GOSTO	3.510e-38	95.83	CYTB_CTER domain-containing protein n=2 Tax=Pentap...	[more]
A0A6N2AEJ6_SOLCI	3.510e-38	95.83	CYTB_CTER domain-containing protein n=1 Tax=Solanu...	[more]
UPI001FCCD08A	4.200e-38	95.83	cytochrome b6/f complex subunit IV n=1 Tax=Solanum...	[more]
A0A6G8QRT5_9ROSA	4.600e-38	95.83	Cytochrome b6-f complex subunit 4 n=1 Tax=Rubus am...	[more]
A0A0D3RVR9_9LAMI	4.600e-38	95.83	Cytochrome b6-f complex subunit 4 n=4 Tax=Pentapet...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.980		coord: 1..72 e-value: 5.5E-22 score: 79.8
None	No IPR available	PANTHER	PTHR19271:SF16		coord: 1..72
None	No IPR available	PANTHER	PTHR19271	CYTOCHROME B	coord: 1..72
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 7..26
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 27..37
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..6
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 38..57
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 58..72
None	No IPR available	SIGNALP_EUK	SignalP-TM	SignalP-TM	coord: 1..18 score: 0.535
None	No IPR available	TMHMM	TMhelix		coord: 7..26
None	No IPR available	TMHMM	TMhelix		coord: 41..63
IPR005798	Cytochrome b/b6, C-terminal	PFAM	PF00032	Cytochrom_B_C	coord: 1..65 e-value: 9.5E-5 score: 22.6
IPR005798	Cytochrome b/b6, C-terminal	PROSITE	PS51003	CYTB_CTER	coord: 1..72 score: 8.636
IPR036150	Cytochrome b/b6, C-terminal domain superfamily	SUPERFAMILY	81648	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	coord: 1..68

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig72790	contig	M-pyrifera_M_contig72790:900..1118 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig72790.17288.1	mRNA_M-pyrifera_M_contig72790.17288.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig72790 900..1118 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig72790.17288.1 ID=prot_M-pyrifera_M_contig72790.17288.1|Name=mRNA_M-pyrifera_M_contig72790.17288.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
RTVPNKLLVVLLMASVLAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTA
VALWLGIGATLPIDKSLTLGLF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005798	Cyt_b/b6_C
IPR036150	Cyt_b/b6_C_sf