mRNA_M-pyrifera_M_contig72790.17288.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig72790.17288.1
Unique Name	mRNA_M-pyrifera_M_contig72790.17288.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot
Match: A0A1Y3BYD7_HELAN (Putative cytochrome b6/f complex, subunit IV n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A1Y3BYD7_HELAN)

HSP 1 Score: 132 bits (332), Expect = 6.370e-39
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 1

Query:    1 RTVPNKLLVVLLMASVLAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 216
            RTVPNKLL VLLM SV AGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct:   11 RTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 82

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BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot
Match: A0A8K0ZAM9_9ASTR (Cytochrome b6/f complex subunit IV n=1 Tax=Heteroplexis impressinervia TaxID=2789018 RepID=A0A8K0ZAM9_9ASTR)

HSP 1 Score: 132 bits (332), Expect = 7.160e-39
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 1

Query:    1 RTVPNKLLVVLLMASVLAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 216
            RTVPNKLL VLLM SV AGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct:   15 RTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 86

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BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot
Match: A0A4Y5RT86_COROF (PetD n=1 Tax=Cornus officinalis TaxID=16906 RepID=A0A4Y5RT86_COROF)

HSP 1 Score: 132 bits (332), Expect = 1.150e-38
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 1

Query:    1 RTVPNKLLVVLLMASVLAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 216
            RTVPNKLL VLLM SV AGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct:   31 RTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 102

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BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot
Match: A0A0V0GVQ2_SOLCH (Putative cytochrome b6/f complex subunit IV-like n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GVQ2_SOLCH)

HSP 1 Score: 132 bits (332), Expect = 1.420e-38
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 1

Query:    1 RTVPNKLLVVLLMASVLAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 216
            RTVPNKLL VLLM SV AGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct:   29 RTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 100

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BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot
Match: A0A251T7T5_HELAN (Putative cytochrome b6/f complex, subunit IV n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251T7T5_HELAN)

HSP 1 Score: 132 bits (332), Expect = 3.020e-38
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 1

Query:    1 RTVPNKLLVVLLMASVLAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 216
            RTVPNKLL VLLM SV AGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct:   58 RTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 129

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BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot
Match: A0A5D2P1N6_GOSTO (CYTB_CTER domain-containing protein n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A5D2P1N6_GOSTO)

HSP 1 Score: 132 bits (332), Expect = 3.510e-38
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 1

Query:    1 RTVPNKLLVVLLMASVLAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 216
            RTVPNKLL VLLM SV AGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct:   68 RTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 139

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BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot
Match: A0A6N2AEJ6_SOLCI (CYTB_CTER domain-containing protein n=1 Tax=Solanum chilense TaxID=4083 RepID=A0A6N2AEJ6_SOLCI)

HSP 1 Score: 132 bits (332), Expect = 3.510e-38
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 1

Query:    1 RTVPNKLLVVLLMASVLAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 216
            RTVPNKLL VLLM SV AGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct:   68 RTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 139

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BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot
Match: UPI001FCCD08A (cytochrome b6/f complex subunit IV n=1 Tax=Solanum ternatum TaxID=743523 RepID=UPI001FCCD08A)

HSP 1 Score: 132 bits (332), Expect = 4.200e-38
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 1

Query:    1 RTVPNKLLVVLLMASVLAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 216
            RTVPNKLL VLLM SV AGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct:   74 RTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 145

[Close]

BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot
Match: A0A6G8QRT5_9ROSA (Cytochrome b6-f complex subunit 4 n=1 Tax=Rubus amabilis TaxID=616954 RepID=A0A6G8QRT5_9ROSA)

HSP 1 Score: 132 bits (332), Expect = 4.600e-38
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 1

Query:    1 RTVPNKLLVVLLMASVLAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 216
            RTVPNKLL VLLM SV AGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct:   77 RTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 148

[Close]

BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot
Match: A0A0D3RVR9_9LAMI (Cytochrome b6-f complex subunit 4 n=4 Tax=Pentapetalae TaxID=1437201 RepID=A0A0D3RVR9_9LAMI)

HSP 1 Score: 132 bits (332), Expect = 4.600e-38
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 1

Query:    1 RTVPNKLLVVLLMASVLAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 216
            RTVPNKLL VLLM SV AGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct:   77 RTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 148

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig72790.17288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1Y3BYD7_HELAN	6.370e-39	95.83	Putative cytochrome b6/f complex, subunit IV n=2 T...	[more]
A0A8K0ZAM9_9ASTR	7.160e-39	95.83	Cytochrome b6/f complex subunit IV n=1 Tax=Heterop...	[more]
A0A4Y5RT86_COROF	1.150e-38	95.83	PetD n=1 Tax=Cornus officinalis TaxID=16906 RepID=...	[more]
A0A0V0GVQ2_SOLCH	1.420e-38	95.83	Putative cytochrome b6/f complex subunit IV-like n...	[more]
A0A251T7T5_HELAN	3.020e-38	95.83	Putative cytochrome b6/f complex, subunit IV n=1 T...	[more]
A0A5D2P1N6_GOSTO	3.510e-38	95.83	CYTB_CTER domain-containing protein n=2 Tax=Pentap...	[more]
A0A6N2AEJ6_SOLCI	3.510e-38	95.83	CYTB_CTER domain-containing protein n=1 Tax=Solanu...	[more]
UPI001FCCD08A	4.200e-38	95.83	cytochrome b6/f complex subunit IV n=1 Tax=Solanum...	[more]
A0A6G8QRT5_9ROSA	4.600e-38	95.83	Cytochrome b6-f complex subunit 4 n=1 Tax=Rubus am...	[more]
A0A0D3RVR9_9LAMI	4.600e-38	95.83	Cytochrome b6-f complex subunit 4 n=4 Tax=Pentapet...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig72790	contig	M-pyrifera_M_contig72790:900..1118 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Viridiplantae
Seed ortholog score	132.5
Seed ortholog evalue	8e-29
Seed eggNOG ortholog	4081.Solyc01g007540.2.1
Preferred name	PETD
KEGG ko	ko:K02637
KEGG Pathway	ko00195,ko01100,map00195,map01100
KEGG Module	M00162
Hectar predicted targeting category	signal peptide
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.	Cytochrome b(C-terminal)/b6/petD
EggNOG OGs	37NKU@33090,3G85T@35493,44QX6@71274,COG1290@1,KOG4663@2759
COG Functional cat.	C
Best tax level	asterids
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko00194
Exons	1
Model size	219
Cds size	219
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816624.9377303-CDS-M-pyrifera_M_contig72790:899..1118	1622816624.9377303-CDS-M-pyrifera_M_contig72790:899..1118	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig72790 900..1118 -
1692278084.2210467-CDS-M-pyrifera_M_contig72790:899..1118	1692278084.2210467-CDS-M-pyrifera_M_contig72790:899..1118	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig72790 900..1118 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig72790.17288.1	prot_M-pyrifera_M_contig72790.17288.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig72790 900..1118 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig72790:900..1118-
coding sequence from alignment at M-pyrifera_M_contig72790:900..1118-

protein sequence of mRNA_M-pyrifera_M_contig72790.17288.1

>prot_M-pyrifera_M_contig72790.17288.1 ID=prot_M-pyrifera_M_contig72790.17288.1|Name=mRNA_M-pyrifera_M_contig72790.17288.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
RTVPNKLLVVLLMASVLAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTA
VALWLGIGATLPIDKSLTLGLF*

mRNA from alignment at M-pyrifera_M_contig72790:900..1118-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig72790.17288.1 ID=mRNA_M-pyrifera_M_contig72790.17288.1|Name=mRNA_M-pyrifera_M_contig72790.17288.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=219bp|location=Sequence derived from alignment at M-pyrifera_M_contig72790:900..1118- (Macrocystis pyrifera P11B4 male)
CGTACAGTGCCAAATAAGTTGTTGGTTGTTCTTTTAATGGCTTCAGTACT
TGCGGGATTATTAACAGTACCCTTTTTGGAGAATGTTAATAAATTCCAAA
ATCCATTTCGTCGTCCCGTAGCGACAACCGTCTTTTTGATTGGTACTGCA
GTAGCCCTTTGGTTGGGTATTGGAGCAACACTACCTATTGATAAGTCCTT
AACTTTAGGTCTTTTTTAA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig72790:900..1118-

>mRNA_M-pyrifera_M_contig72790.17288.1 ID=mRNA_M-pyrifera_M_contig72790.17288.1|Name=mRNA_M-pyrifera_M_contig72790.17288.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig72790:900..1118- (Macrocystis pyrifera P11B4 male)
CGTACAGTGCCAAATAAGTTGTTGGTTGTTCTTTTAATGGCTTCAGTACT
TGCGGGATTATTAACAGTACCCTTTTTGGAGAATGTTAATAAATTCCAAA
ATCCATTTCGTCGTCCCGTAGCGACAACCGTCTTTTTGATTGGTACTGCA
GTAGCCCTTTGGTTGGGTATTGGAGCAACACTACCTATTGATAAGTCCTT
AACTTTAGGTCTTTTTTAACGTACAGTGCCAAATAAGTTGTTGGTTGTTC
TTTTAATGGCTTCAGTACTTGCGGGATTATTAACAGTACCCTTTTTGGAG
AATGTTAATAAATTCCAAAATCCATTTCGTCGTCCCGTAGCGACAACCGT
CTTTTTGATTGGTACTGCAGTAGCCCTTTGGTTGGGTATTGGAGCAACAC
TACCTATTGATAAGTCCTTAACTTTAGGTCTTTTTTAA