prot_M-pyrifera_M_contig70578.16845.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig70578.16845.1
Unique Nameprot_M-pyrifera_M_contig70578.16845.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length145
Homology
BLAST of mRNA_M-pyrifera_M_contig70578.16845.1 vs. uniprot
Match: A0A7Y2DTS3_9ACTN (Transcription elongation factor GreA n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DTS3_9ACTN)

HSP 1 Score: 203 bits (516), Expect = 1.090e-64
Identity = 107/140 (76.43%), Postives = 119/140 (85.00%), Query Frame = 0
Query:    6 QLSKEAFTRLKSEFDDLTTRGRIEIAQKIETARELGDLSENGDYHAAKEAQGKMEGRIQHLAGILEAAVIVEVDESSLSAVSAGCVVTIRYDGDDDVEKYLIGSIEERREGVTVMSPGSPLGKALLGASKGDTVSYEAPG 145
            QLSKEAF RL+ E+DDLT RGRIEIAQKIETARELGDLSENGDYHAAKE QGKMEGRI  L+ +LE A IVEVD +S   V AGCVV I+Y+GD+ VE YLIGSIEE+R+GV VMSPGSP+G+ALLGA  GDTV YEAPG
Sbjct:    6 QLSKEAFVRLEKEYDDLTNRGRIEIAQKIETARELGDLSENGDYHAAKEEQGKMEGRIAQLSVMLENAEIVEVDANS-QEVQAGCVVGIKYEGDEHVESYLIGSIEEKRDGVDVMSPGSPIGQALLGAKVGDTVGYEAPG 144          
BLAST of mRNA_M-pyrifera_M_contig70578.16845.1 vs. uniprot
Match: A0A7Y2II96_9ACTN (Transcription elongation factor GreA n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2II96_9ACTN)

HSP 1 Score: 201 bits (510), Expect = 8.920e-64
Identity = 101/144 (70.14%), Postives = 121/144 (84.03%), Query Frame = 0
Query:    1 VVDQQQLSKEAFTRLKSEFDDLTTRGRIEIAQKIETARELGDLSENGDYHAAKEAQGKMEGRIQHLAGILEAAVIVEVDESSLSAVSAGCVVTIRYDGDDDVEKYLIGSIEERREGVTVMSPGSPLGKALLGASKGDTVSYEAP 144
            + D+ Q S EAF RLK+EFDDLT RGRIEIAQKIE+ARELGDLSENGDYHAAKE QGKMEGRI  LA +LE A IVE+D S+   V AGC++ IRY+GDD+VEKYL+GSIEE+R+G+  MSPGSP+G+AL+G + GDTV +EAP
Sbjct:    1 MADRHQFSAEAFKRLKNEFDDLTNRGRIEIAQKIESARELGDLSENGDYHAAKEEQGKMEGRINQLAALLEDAEIVEIDASA-QVVQAGCIIGIRYEGDDEVEKYLLGSIEEKRDGLDPMSPGSPIGRALMGHAVGDTVKFEAP 143          
BLAST of mRNA_M-pyrifera_M_contig70578.16845.1 vs. uniprot
Match: A0A538CVV5_9ACTN (Transcription elongation factor GreA n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538CVV5_9ACTN)

HSP 1 Score: 192 bits (488), Expect = 1.930e-60
Identity = 99/140 (70.71%), Postives = 117/140 (83.57%), Query Frame = 0
Query:    7 LSKEAFTRLKSEFDDLTTRGRIEIAQKIETARELGDLSENGDYHAAKEAQGKMEGRIQHLAGILEAAVIV-EVDESSLSAVSAGCVVTIRYDGDDDVEKYLIGSIEERREGVTVMSPGSPLGKALLGASKGDTVSYEAPG 145
            LSK AF RLK+E  DLTTRGRIEIA+KIETARELGDLSENGDYHAAK+ QGKMEGRI+HL  +LE+A IV ++D  S   V  GCVV++RY+GDDDVE+YL+GSIEERREG+ V+SPGSPLG AL+G+  GD +SY  PG
Sbjct:    7 LSKSAFDRLKAELTDLTTRGRIEIARKIETARELGDLSENGDYHAAKDEQGKMEGRIRHLGRLLESATIVADIDSES---VQPGCVVSVRYEGDDDVERYLVGSIEERREGLDVVSPGSPLGAALIGSKIGDDISYSWPG 143          
BLAST of mRNA_M-pyrifera_M_contig70578.16845.1 vs. uniprot
Match: A0A351EV46_9ACTN (Transcription elongation factor GreA n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351EV46_9ACTN)

HSP 1 Score: 191 bits (486), Expect = 4.010e-60
Identity = 100/145 (68.97%), Postives = 118/145 (81.38%), Query Frame = 0
Query:    1 VVDQQQLSKEAFTRLKSEFDDLTTRGRIEIAQKIETARELGDLSENGDYHAAKEAQGKMEGRIQHLAGILEAAVIVEVDESSLSAVSAGCVVTIRYDGDDDVEKYLIGSIEERREGVTVMSPGSPLGKALLGASKGDTVSYEAPG 145
            + D +QLS++A  RL++E +DLTTRGRI+IA+KIETARELGDLSENGDYHAAKE QGKMEGRI HL G LE  +IVE+ E++   V+ G VV IRY+GD D E YL+GSIEERREG+TVMS  SPLG ALLG+  G TVSYEAPG
Sbjct:    1 MADPKQLSQQAHDRLQAELEDLTTRGRIDIARKIETARELGDLSENGDYHAAKEEQGKMEGRIMHLEGTLEDCIIVEIPEAT-DTVTMGNVVKIRYEGDTDTETYLVGSIEERREGITVMSSSSPLGAALLGSKIGQTVSYEAPG 144          
BLAST of mRNA_M-pyrifera_M_contig70578.16845.1 vs. uniprot
Match: A0A2E5ZG62_9ACTN (Transcription elongation factor GreA n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E5ZG62_9ACTN)

HSP 1 Score: 188 bits (478), Expect = 6.830e-59
Identity = 98/141 (69.50%), Postives = 117/141 (82.98%), Query Frame = 0
Query:    5 QQLSKEAFTRLKSEFDDLTTRGRIEIAQKIETARELGDLSENGDYHAAKEAQGKMEGRIQHLAGILEAAVIVEVDESSLSAVSAGCVVTIRYDGDDDVEKYLIGSIEERREGVTVMSPGSPLGKALLGASKGDTVSYEAPG 145
            QQLS+EA  RL +E +DLTTRGRI+IA+KIE ARELGDLSENGDYHAAKE QGKMEGRI HL  ILE A IVEV +   S V+ G VV++ YDGDD+ E+ L+GSIEE+R+ V V+SPGSPLG+ALLG+S GD+VS+EAPG
Sbjct:    5 QQLSQEAHDRLAAELEDLTTRGRIDIARKIEAARELGDLSENGDYHAAKEEQGKMEGRILHLEAILEKAEIVEVADGDPSVVATGMVVSVVYDGDDEPERMLVGSIEEQRDDVLVVSPGSPLGEALLGSSVGDSVSFEAPG 145          
BLAST of mRNA_M-pyrifera_M_contig70578.16845.1 vs. uniprot
Match: A0A7X7D4D5_9ACTN (Transcription elongation factor GreA n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7D4D5_9ACTN)

HSP 1 Score: 187 bits (476), Expect = 1.330e-58
Identity = 97/138 (70.29%), Postives = 112/138 (81.16%), Query Frame = 0
Query:    7 LSKEAFTRLKSEFDDLTTRGRIEIAQKIETARELGDLSENGDYHAAKEAQGKMEGRIQHLAGILEAAVIVEVDESSLSAVSAGCVVTIRYDGDDDVEKYLIGSIEERREGVTVMSPGSPLGKALLGASKGDTVSYEAP 144
            LS+ AF RLK E DDL TRGR++IA+KIETARELGDLSENGDYHAAKE QGKMEGRI HLA ++E A IVE   + +  + AG VV+IRY+GDDDVE+YL+GSIEER EG+ VMSPGSPLG AL+G   GD VSYE P
Sbjct:    7 LSQAAFDRLKEEHDDLVTRGRLDIARKIETARELGDLSENGDYHAAKEEQGKMEGRIIHLANLIENAEIVE--NAGVDEIRAGVVVSIRYEGDDDVERYLLGSIEERVEGIDVMSPGSPLGAALIGKKAGDVVSYETP 142          
BLAST of mRNA_M-pyrifera_M_contig70578.16845.1 vs. uniprot
Match: A0A538BB20_9ACTN (Transcription elongation factor GreA n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538BB20_9ACTN)

HSP 1 Score: 185 bits (470), Expect = 1.090e-57
Identity = 92/140 (65.71%), Postives = 114/140 (81.43%), Query Frame = 0
Query:    6 QLSKEAFTRLKSEFDDLTTRGRIEIAQKIETARELGDLSENGDYHAAKEAQGKMEGRIQHLAGILEAAVIVEVDESSLSAVSAGCVVTIRYDGDDDVEKYLIGSIEERREGVTVMSPGSPLGKALLGASKGDTVSYEAPG 145
            QLS++A+ RL++E DDLTTRGR+EIA  IE ARELGDLSENGDYHAAK+ QGKME RI+ L  +L+ A IV+   +S   V+AG +VTIRY+GDDD E YLIGSIEERR+ ++V+SPGSPLG+AL+G + GD V YEAPG
Sbjct:    5 QLSRDAYDRLQAELDDLTTRGRVEIATAIERARELGDLSENGDYHAAKDDQGKMEARIRQLQAMLKGAEIVDAPSASSGTVAAGSIVTIRYEGDDDTESYLIGSIEERRDDISVISPGSPLGQALVGRNTGDVVEYEAPG 144          
BLAST of mRNA_M-pyrifera_M_contig70578.16845.1 vs. uniprot
Match: A0A2D9PTY7_9ACTN (Transcription elongation factor GreA n=3 Tax=root TaxID=1 RepID=A0A2D9PTY7_9ACTN)

HSP 1 Score: 184 bits (468), Expect = 2.270e-57
Identity = 95/145 (65.52%), Postives = 118/145 (81.38%), Query Frame = 0
Query:    1 VVDQQQLSKEAFTRLKSEFDDLTTRGRIEIAQKIETARELGDLSENGDYHAAKEAQGKMEGRIQHLAGILEAAVIVEVDESSLSAVSAGCVVTIRYDGDDDVEKYLIGSIEERREGVTVMSPGSPLGKALLGASKGDTVSYEAPG 145
            + + QQLS+EA  RL +EF DLTTRGRI+IA+KIETARELGDLSENGDYHAAKE QGKMEGRI  L  ILE + IVE+   ++  V+ G VV + ++GDD+ E+ L+GSIEE+R+ V V+SPGSPLG+ALLGA+ GDTVS+EAPG
Sbjct:    1 MAEAQQLSQEAHNRLVAEFQDLTTRGRIDIARKIETARELGDLSENGDYHAAKEEQGKMEGRIMQLESILENSEIVEIATGTVDLVAPGTVVAVVFEGDDEPERMLVGSIEEKRDDVGVVSPGSPLGEALLGAAVGDTVSFEAPG 145          
BLAST of mRNA_M-pyrifera_M_contig70578.16845.1 vs. uniprot
Match: A0A2E4SV22_9ACTN (Transcription elongation factor GreA n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E4SV22_9ACTN)

HSP 1 Score: 184 bits (468), Expect = 2.270e-57
Identity = 94/140 (67.14%), Postives = 114/140 (81.43%), Query Frame = 0
Query:    6 QLSKEAFTRLKSEFDDLTTRGRIEIAQKIETARELGDLSENGDYHAAKEAQGKMEGRIQHLAGILEAAVIVEVDESSLSAVSAGCVVTIRYDGDDDVEKYLIGSIEERREGVTVMSPGSPLGKALLGASKGDTVSYEAPG 145
            QLS+EA  RL +EF+DLTTRGRI+IA+KIETARELGDLSENGDYHAAKE QGKMEGRI HL  IL  A IVE+       V+ G +V + Y+GDD+ E+ L+GSIEE+R+ V V+SPGSPLG+ALLG++ GDTVS+EAPG
Sbjct:    6 QLSQEAHDRLAAEFEDLTTRGRIDIARKIETARELGDLSENGDYHAAKEEQGKMEGRILHLESILNKAEIVELSAGGADVVAPGTIVAVVYEGDDEPERMLVGSIEEQRDDVLVVSPGSPLGEALLGSAVGDTVSFEAPG 145          
BLAST of mRNA_M-pyrifera_M_contig70578.16845.1 vs. uniprot
Match: UPI001C625D89 (transcription elongation factor GreA n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C625D89)

HSP 1 Score: 184 bits (467), Expect = 3.120e-57
Identity = 97/142 (68.31%), Postives = 114/142 (80.28%), Query Frame = 0
Query:    3 DQQQLSKEAFTRLKSEFDDLTTRGRIEIAQKIETARELGDLSENGDYHAAKEAQGKMEGRIQHLAGILEAAVIVEVDESSLSAVSAGCVVTIRYDGDDDVEKYLIGSIEERREGVTVMSPGSPLGKALLGASKGDTVSYEAP 144
            D  QLS+ A+ RLK+E+DDLTTRGRI+IA+KIETARELGDLSENGDYHAAKE QGKM+GRI HL  ILE   IV  D +S   V+ G +VTIRY+GDDD E+YL+GSIEER + + VMSPGSPLG+AL+G   GD VSYE P
Sbjct:    4 DTTQLSQAAYDRLKAEYDDLTTRGRIDIARKIETARELGDLSENGDYHAAKEEQGKMQGRILHLQAILENHEIV--DTASGGTVAPGSIVTIRYEGDDDTERYLLGSIEERHDDLDVMSPGSPLGEALVGHVAGDVVSYETP 143          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70578.16845.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2DTS3_9ACTN1.090e-6476.43Transcription elongation factor GreA n=1 Tax=Acidi... [more]
A0A7Y2II96_9ACTN8.920e-6470.14Transcription elongation factor GreA n=1 Tax=Acidi... [more]
A0A538CVV5_9ACTN1.930e-6070.71Transcription elongation factor GreA n=1 Tax=Actin... [more]
A0A351EV46_9ACTN4.010e-6068.97Transcription elongation factor GreA n=1 Tax=Acidi... [more]
A0A2E5ZG62_9ACTN6.830e-5969.50Transcription elongation factor GreA n=3 Tax=Acidi... [more]
A0A7X7D4D5_9ACTN1.330e-5870.29Transcription elongation factor GreA n=1 Tax=Acidi... [more]
A0A538BB20_9ACTN1.090e-5765.71Transcription elongation factor GreA n=1 Tax=Actin... [more]
A0A2D9PTY7_9ACTN2.270e-5765.52Transcription elongation factor GreA n=3 Tax=root ... [more]
A0A2E4SV22_9ACTN2.270e-5767.14Transcription elongation factor GreA n=2 Tax=Acidi... [more]
UPI001C625D893.120e-5768.31transcription elongation factor GreA n=1 Tax=Iamia... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023459Transcription elongation factor GreA/GreB familyPIRSFPIRSF006092GreA_GreBcoord: 2..145
e-value: 1.2E-34
score: 117.4
IPR023459Transcription elongation factor GreA/GreB familyPANTHERPTHR30437TRANSCRIPTION ELONGATION FACTOR GREAcoord: 7..144
IPR022691Transcription elongation factor, GreA/GreB, N-terminalPFAMPF03449GreA_GreB_Ncoord: 6..75
e-value: 6.4E-24
score: 83.9
IPR001437Transcription elongation factor, GreA/GreB, C-terminalPFAMPF01272GreA_GreBcoord: 85..145
e-value: 1.9E-12
score: 46.9
IPR036953Transcription elongation factor GreA/GreB, C-terminal domain superfamilyGENE3D3.10.50.30coord: 79..145
e-value: 2.4E-10
score: 41.9
IPR036805Transcription elongation factor, GreA/GreB, N-terminal domain superfamilyGENE3D1.10.287.180coord: 2..76
e-value: 5.5E-23
score: 82.7
IPR036805Transcription elongation factor, GreA/GreB, N-terminal domain superfamilySUPERFAMILY46557GreA transcript cleavage protein, N-terminal domaincoord: 6..79
NoneNo IPR availablePANTHERPTHR30437:SF4TRANSCRIPTION ELONGATION FACTOR GREAcoord: 7..144
NoneNo IPR availableSUPERFAMILY54534FKBP-likecoord: 85..145
IPR018151Transcription elongation factor, GreA/GreB, conserved sitePROSITEPS00830GREAB_2coord: 121..137

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70578contigM-pyrifera_M_contig70578:1..435 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70578.16845.1mRNA_M-pyrifera_M_contig70578.16845.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig70578 1..435 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig70578.16845.1 ID=prot_M-pyrifera_M_contig70578.16845.1|Name=mRNA_M-pyrifera_M_contig70578.16845.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
VVDQQQLSKEAFTRLKSEFDDLTTRGRIEIAQKIETARELGDLSENGDYH
AAKEAQGKMEGRIQHLAGILEAAVIVEVDESSLSAVSAGCVVTIRYDGDD
DVEKYLIGSIEERREGVTVMSPGSPLGKALLGASKGDTVSYEAPG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023459Tscrpt_elong_fac_GreA/B_fam
IPR022691Tscrpt_elong_fac_GreA/B_N
IPR001437Tscrpt_elong_fac_GreA/B_C
IPR036953GreA/GreB_C_sf
IPR036805Tscrpt_elong_fac_GreA/B_N_sf
IPR018151TF_GreA/GreB_CS