prot_M-pyrifera_M_contig70542.16842.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig70542.16842.1
Unique Nameprot_M-pyrifera_M_contig70542.16842.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length190
Homology
BLAST of mRNA_M-pyrifera_M_contig70542.16842.1 vs. uniprot
Match: A0A834ZAQ7_9MAGN (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834ZAQ7_9MAGN)

HSP 1 Score: 66.6 bits (161), Expect = 1.110e-9
Identity = 54/189 (28.57%), Postives = 88/189 (46.56%), Query Frame = 0
Query:    1 CSWFGAAALVAIGHLCPKLRVLNLRFCPRLPLAALGELGKLLPNLEEMILDGNS------------ELKDDDLLSCTRNMRGLRVLRLGGCRELTDTGIGRAIGSLRRMPHLHTLSLLACYNLSAEGVAPVILGKNLRVLNLMAVWSCGDEVASAIGKYCPNLDTVFLGGHVMVTDVGIEALAKGCSKL 177
            C       + A+ + C KL+ L++ +  R+    +  + K   ++ ++ L G               + D  LL    N + L+ L L  C +LTD G+ +    L +   L +L+L A  + + E    + L  NLR L+L    +  D+  S I K C +L ++ L   V VTDVG+ ALA+GCS L
Sbjct:   75 CQKISDKGIEAVTNSCLKLKALSIYWNVRVTDLGIEHMVKNCKHMVDLNLSGCKIDIAAVLKCRFKNVSDKSLLLIAENYQELKFLNLTRCIKLTDGGLQQI---LLKCSSLESLNLYALSSFTDEAYRKIELLGNLRFLDLCGAQNLSDQGLSCIAK-CKHLVSLNLTWCVRVTDVGVIALAQGCSSL 259          
BLAST of mRNA_M-pyrifera_M_contig70542.16842.1 vs. uniprot
Match: A0A8J5FTG2_ZINOF (F-box domain-containing protein n=3 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FTG2_ZINOF)

HSP 1 Score: 57.4 bits (137), Expect = 2.620e-6
Identity = 44/165 (26.67%), Postives = 74/165 (44.85%), Query Frame = 0
Query:    5 GAAALVAIGHLC--PKLRVLNLRFCPRLPLAALGELGKLLPNLEEMILDGNSELKDDDLLSCTRNMRGLRVLRLGGCRELTDTGIGRAIGSLRRMPHLHTLSLLACYNLSAEGVAPVILGKNLRVLNLMAVWSCGDEVASA---IGKYCPNLDTVFLGGHVMVTD 164
            G      +G+ C   KLR +++  C  L    L  + K  P L+++ +  +  L D  L +     R L    L  C  +T  G+   +  L   P L++L+L+ C  +     AP  L   + + +L+ +  C D  +++   +GK CP L  + LGG   VTD
Sbjct:  407 GEKGFWVMGNTCGLQKLRSISITCCSGLTDIGLQAVAKGSPLLKQLFVRKSCYLSDAGLRAFAEKARALENFHLENCNRVTFLGV---LSVLFNCPKLNSLALMRCLGIRDLPYAPAQLPSCMSLESLI-IQDCPDVTSASLQMVGKICPQLQKIDLGGQAGVTD 567          
BLAST of mRNA_M-pyrifera_M_contig70542.16842.1 vs. uniprot
Match: A0A336LB72_CULSO (CSON008030 protein n=2 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336LB72_CULSO)

HSP 1 Score: 54.3 bits (129), Expect = 2.840e-5
Identity = 39/147 (26.53%), Postives = 69/147 (46.94%), Query Frame = 0
Query:   40 KLLPNLEEMILDGNSELKDDDLLSCTRNMRGLRVLRLGGCRELTDTGI-GRAIGS-------LRRMPHLHTLSLLACYNLSAEGVAPVILGKNLRVLNLMAVWSCGDEVASAIGKYCPNLDTVFLGGHVMVTDVGIEALAKGCSKLR 178
            K  P L E+ L     + D  L    +N RGL++L++  C E++D GI G  I         L  + HL  LSL  C  ++   ++     K+L+ L+L  +     E  S + + CP ++ + L G   +T+  ++ ++K    L+
Sbjct:  371 KSFPMLIELELLSCHTVDDHILQIIVKNCRGLKILKIISCDEISDNGIMGEIIDDSGNNGLPLSVLSHLEVLSLSKCTKITNMSLSHSFKFKSLKGLDLTGLDKISAEGISQMTRECPFIEKLKLDGCKSLTNDAVDIISKNLKLLK 517          
BLAST of mRNA_M-pyrifera_M_contig70542.16842.1 vs. uniprot
Match: A0A2U1QC55_ARTAN (RNI-like superfamily protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QC55_ARTAN)

HSP 1 Score: 53.1 bits (126), Expect = 5.830e-5
Identity = 32/79 (40.51%), Postives = 42/79 (53.16%), Query Frame = 0
Query:   97 MPHLHTLSLLACYNLSAEGVAPVILGKNLRVLNLMAVWSCGDEVASAIGKYCPNLDTVFLGGHVMVTDVGIEALAKGCS 175
            + HL  L L    NLS EG+  +   KN+R LNL       D    AI + C +L+ + L G V VTD  +EAL+K CS
Sbjct:  236 LAHLEFLDLCGAQNLSDEGLFCIAKCKNIRTLNLTWCVRVTDVGVIAIAEGCTSLEYLSLFGTVGVTDKCLEALSKSCS 314          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70542.16842.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A834ZAQ7_9MAGN1.110e-928.57Uncharacterized protein n=1 Tax=Tetracentron sinen... [more]
A0A8J5FTG2_ZINOF2.620e-626.67F-box domain-containing protein n=3 Tax=Zingiber o... [more]
A0A336LB72_CULSO2.840e-526.53CSON008030 protein n=2 Tax=Culicoides sonorensis T... [more]
A0A2U1QC55_ARTAN5.830e-540.51RNI-like superfamily protein n=1 Tax=Artemisia ann... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 148..173
e-value: 0.0037
score: 26.5
coord: 16..41
e-value: 0.91
score: 18.6
coord: 97..124
e-value: 130.0
score: 6.0
coord: 68..94
e-value: 32.0
score: 10.6
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..189
e-value: 9.0E-30
score: 105.4
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 7..178
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 7..178
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 10..185

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70542contigM-pyrifera_M_contig70542:21..827 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70542.16842.1mRNA_M-pyrifera_M_contig70542.16842.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig70542 21..827 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig70542.16842.1 ID=prot_M-pyrifera_M_contig70542.16842.1|Name=mRNA_M-pyrifera_M_contig70542.16842.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=190bp
CSWFGAAALVAIGHLCPKLRVLNLRFCPRLPLAALGELGKLLPNLEEMIL
DGNSELKDDDLLSCTRNMRGLRVLRLGGCRELTDTGIGRAIGSLRRMPHL
HTLSLLACYNLSAEGVAPVILGKNLRVLNLMAVWSCGDEVASAIGKYCPN
LDTVFLGGHVMVTDVGIEALAKGCSKLRNFMGWWCEQCGD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf