mRNA_M-pyrifera_M_contig70542.16842.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70542.16842.1
Unique NamemRNA_M-pyrifera_M_contig70542.16842.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70542.16842.1 vs. uniprot
Match: A0A834ZAQ7_9MAGN (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834ZAQ7_9MAGN)

HSP 1 Score: 66.6 bits (161), Expect = 1.110e-9
Identity = 54/189 (28.57%), Postives = 88/189 (46.56%), Query Frame = 1 
Query:    1 CSWFGAAALVAIGHLCPKLRVLNLRFCPRLPLAALGELGKLLPNLEEMILDGNS------------ELKDDDLLSCTRNMRGLRVLRLGGCRELTDTGIGRAIGSLRRMPHLHTLSLLACYNLSAEGVAPVILGKNLRVLNLMAVWSCGDEVASAIGKYCPNLDTVFLGGHVMVTDVGIEALAKGCSKL 531
            C       + A+ + C KL+ L++ +  R+    +  + K   ++ ++ L G               + D  LL    N + L+ L L  C +LTD G+ +    L +   L +L+L A  + + E    + L  NLR L+L    +  D+  S I K C +L ++ L   V VTDVG+ ALA+GCS L
Sbjct:   75 CQKISDKGIEAVTNSCLKLKALSIYWNVRVTDLGIEHMVKNCKHMVDLNLSGCKIDIAAVLKCRFKNVSDKSLLLIAENYQELKFLNLTRCIKLTDGGLQQI---LLKCSSLESLNLYALSSFTDEAYRKIELLGNLRFLDLCGAQNLSDQGLSCIAK-CKHLVSLNLTWCVRVTDVGVIALAQGCSSL 259
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BLAST of mRNA_M-pyrifera_M_contig70542.16842.1 vs. uniprot
Match: A0A8J5FTG2_ZINOF (F-box domain-containing protein n=3 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FTG2_ZINOF)

HSP 1 Score: 57.4 bits (137), Expect = 2.620e-6
Identity = 44/165 (26.67%), Postives = 74/165 (44.85%), Query Frame = 1 
Query:   13 GAAALVAIGHLC--PKLRVLNLRFCPRLPLAALGELGKLLPNLEEMILDGNSELKDDDLLSCTRNMRGLRVLRLGGCRELTDTGIGRAIGSLRRMPHLHTLSLLACYNLSAEGVAPVILGKNLRVLNLMAVWSCGDEVASA---IGKYCPNLDTVFLGGHVMVTD 492
            G      +G+ C   KLR +++  C  L    L  + K  P L+++ +  +  L D  L +     R L    L  C  +T  G+   +  L   P L++L+L+ C  +     AP  L   + + +L+ +  C D  +++   +GK CP L  + LGG   VTD
Sbjct:  407 GEKGFWVMGNTCGLQKLRSISITCCSGLTDIGLQAVAKGSPLLKQLFVRKSCYLSDAGLRAFAEKARALENFHLENCNRVTFLGV---LSVLFNCPKLNSLALMRCLGIRDLPYAPAQLPSCMSLESLI-IQDCPDVTSASLQMVGKICPQLQKIDLGGQAGVTD 567
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BLAST of mRNA_M-pyrifera_M_contig70542.16842.1 vs. uniprot
Match: A0A336LB72_CULSO (CSON008030 protein n=2 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336LB72_CULSO)

HSP 1 Score: 54.3 bits (129), Expect = 2.840e-5
Identity = 39/147 (26.53%), Postives = 69/147 (46.94%), Query Frame = 1 
Query:  118 KLLPNLEEMILDGNSELKDDDLLSCTRNMRGLRVLRLGGCRELTDTGI-GRAIGS-------LRRMPHLHTLSLLACYNLSAEGVAPVILGKNLRVLNLMAVWSCGDEVASAIGKYCPNLDTVFLGGHVMVTDVGIEALAKGCSKLR 534
            K  P L E+ L     + D  L    +N RGL++L++  C E++D GI G  I         L  + HL  LSL  C  ++   ++     K+L+ L+L  +     E  S + + CP ++ + L G   +T+  ++ ++K    L+
Sbjct:  371 KSFPMLIELELLSCHTVDDHILQIIVKNCRGLKILKIISCDEISDNGIMGEIIDDSGNNGLPLSVLSHLEVLSLSKCTKITNMSLSHSFKFKSLKGLDLTGLDKISAEGISQMTRECPFIEKLKLDGCKSLTNDAVDIISKNLKLLK 517
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BLAST of mRNA_M-pyrifera_M_contig70542.16842.1 vs. uniprot
Match: A0A2U1QC55_ARTAN (RNI-like superfamily protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QC55_ARTAN)

HSP 1 Score: 53.1 bits (126), Expect = 5.830e-5
Identity = 32/79 (40.51%), Postives = 42/79 (53.16%), Query Frame = 1 
Query:  289 MPHLHTLSLLACYNLSAEGVAPVILGKNLRVLNLMAVWSCGDEVASAIGKYCPNLDTVFLGGHVMVTDVGIEALAKGCS 525
            + HL  L L    NLS EG+  +   KN+R LNL       D    AI + C +L+ + L G V VTD  +EAL+K CS
Sbjct:  236 LAHLEFLDLCGAQNLSDEGLFCIAKCKNIRTLNLTWCVRVTDVGVIAIAEGCTSLEYLSLFGTVGVTDKCLEALSKSCS 314
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70542.16842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A834ZAQ7_9MAGN1.110e-928.57Uncharacterized protein n=1 Tax=Tetracentron sinen... [more]
A0A8J5FTG2_ZINOF2.620e-626.67F-box domain-containing protein n=3 Tax=Zingiber o... [more]
A0A336LB72_CULSO2.840e-526.53CSON008030 protein n=2 Tax=Culicoides sonorensis T... [more]
A0A2U1QC55_ARTAN5.830e-540.51RNI-like superfamily protein n=1 Tax=Artemisia ann... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70542contigM-pyrifera_M_contig70542:21..827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score72.8
Seed ortholog evalue2e-10
Seed eggNOG ortholog10160.XP_004645981.1
Preferred nameFBXL4
KEGG koko:K10270
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016567,GO:0016604,GO:0016607,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0032446,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0051603,GO:0070013,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.Leucine-rich repeat - CC (cysteine-containing) subfamily
EggNOG OGs35A9H@314146,38EAP@33154,3BDEX@33208,3CRVG@33213,3JBKV@40674,47Z10@7711,490RZ@7742,4Q4FT@9989,KOG1947@1,KOG1947@2759
COG Functional cat.S
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko04121
Exons2
Model size570
Cds size570
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816598.367887-CDS-M-pyrifera_M_contig70542:20..2291622816598.367887-CDS-M-pyrifera_M_contig70542:20..229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70542 21..229 -
1692278069.091011-CDS-M-pyrifera_M_contig70542:20..2291692278069.091011-CDS-M-pyrifera_M_contig70542:20..229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70542 21..229 -
1622816598.38146-CDS-M-pyrifera_M_contig70542:466..8271622816598.38146-CDS-M-pyrifera_M_contig70542:466..827Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70542 467..827 -
1692278069.1019738-CDS-M-pyrifera_M_contig70542:466..8271692278069.1019738-CDS-M-pyrifera_M_contig70542:466..827Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70542 467..827 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70542.16842.1prot_M-pyrifera_M_contig70542.16842.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70542 21..827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70542.16842.1

>prot_M-pyrifera_M_contig70542.16842.1 ID=prot_M-pyrifera_M_contig70542.16842.1|Name=mRNA_M-pyrifera_M_contig70542.16842.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=190bp
CSWFGAAALVAIGHLCPKLRVLNLRFCPRLPLAALGELGKLLPNLEEMIL
DGNSELKDDDLLSCTRNMRGLRVLRLGGCRELTDTGIGRAIGSLRRMPHL
HTLSLLACYNLSAEGVAPVILGKNLRVLNLMAVWSCGDEVASAIGKYCPN
LDTVFLGGHVMVTDVGIEALAKGCSKLRNFMGWWCEQCGD
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mRNA from alignment at M-pyrifera_M_contig70542:21..827-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70542.16842.1 ID=mRNA_M-pyrifera_M_contig70542.16842.1|Name=mRNA_M-pyrifera_M_contig70542.16842.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=807bp|location=Sequence derived from alignment at M-pyrifera_M_contig70542:21..827- (Macrocystis pyrifera P11B4 male)
TGCAGCTGGTTTGGTGCCGCTGCATTGGTTGCCATTGGCCACCTATGTCC
CAAATTACGTGTGTTGAACCTTCGCTTTTGCCCACGACTCCCTCTTGCCG
CACTGGGAGAGTTGGGGAAGTTGCTTCCAAATTTGGAAGAGATGATCCTG
GATGGCAACTCTGAGCTCAAAGATGATGACTTGCTGTCATGTACGCGTAA
TATGAGAGGTTTGCGTGTGCTTCGACTTGGTGGATGCCGAGAACTGACCG
ATACTGGGATTGGAAGAGCAATTGGGTCACTTCGCCGAATGCCCCATTTA
CACACGTTGTCGTTACTTGCTTGTTACAACTTGTCAGCAGAAGGAGTTGC
TCCTGTTATTCGTTGTCGAAAACTCCGTCATCTCGAAACTGGTGCAATCA
AGACAACTGGTGTTGACAAGCTTGTCGAAGCAATCATCTTGACTGGAAAG
AGTGGAGATGGAGCAAGTGGTGGTGATGGTGGTGGAGAAGAAGAGGATGG
CGGGAGTGATACGGATGCAGAAGGGGGCCTTGAATCCTTATCTTTACGAT
CCTTGGAACGTATGAGAGGTGCAGATGTCGTTCAAATTCTTGAAGCAGTG
GGGAAAAACTTGCGTGTGTTGAATTTGATGGCTGTGTGGAGCTGTGGTGA
TGAAGTTGCAAGTGCAATCGGAAAGTATTGTCCAAACTTAGATACAGTGT
TCCTCGGTGGCCACGTGATGGTGACTGATGTTGGAATTGAAGCATTGGCA
AAAGGATGCTCAAAATTGCGAAATTTCATGGGTTGGTGGTGTGAGCAATG
CGGAGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70542:21..827-

>mRNA_M-pyrifera_M_contig70542.16842.1 ID=mRNA_M-pyrifera_M_contig70542.16842.1|Name=mRNA_M-pyrifera_M_contig70542.16842.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1140bp|location=Sequence derived from alignment at M-pyrifera_M_contig70542:21..827- (Macrocystis pyrifera P11B4 male)
TGCAGCTGGTTTGGTGCCGCTGCATTGGTTGCCATTGGCCACCTATGTCC
CAAATTACGTGTGTTGAACCTTCGCTTTTGCCCACGACTCCCTCTTGCCG
CACTGGGAGAGTTGGGGAAGTTGCTTCCAAATTTGGAAGAGATGATCCTG
GATGGCAACTCTGAGCTCAAAGATGATGACTTGCTGTCATGTACGCGTAA
TATGAGAGGTTTGCGTGTGCTTCGACTTGGTGGATGCCGAGAACTGACCG
ATACTGGGATTGGAAGAGCAATTGGGTCACTTCGCCGAATGCCCCATTTA
CACACGTTGTCGTTACTTGCTTGTTACAACTTGTCAGCAGAAGGAGTTGC
TCCTGTTATTCTGCAGCTGGTTTGGTGCCGCTGCATTGGTTGCCATTGGC
CACCTATGTCCCAAATTACGTGTGTTGAACCTTCGCTTTTGCCCACGACT
CCCTCTTGCCGCACTGGGAGAGTTGGGGAAGTTGCTTCCAAATTTGGAAG
AGATGATCCTGGATGGCAACTCTGAGCTCAAAGATGATGACTTGCTGTCA
TGTACGCGTAATATGAGAGGTTTGCGTGTGCTTCGACTTGGTGGATGCCG
AGAACTGACCGATACTGGGATTGGAAGAGCAATTGGGTCACTTCGCCGAA
TGCCCCATTTACACACGTTGTCGTTACTTGCTTGTTACAACTTGTCAGCA
GAAGGAGTTGCTCCTGTTATTCTGGGGAAAAACTTGCGTGTGTTGAATTT
GATGGCTGTGTGGAGCTGTGGTGATGAAGTTGCAAGTGCAATCGGAAAGT
ATTGTCCAAACTTAGATACAGTGTTCCTCGGTGGCCACGTGATGGTGACT
GATGTTGGAATTGAAGCATTGGCAAAAGGATGCTCAAAATTGCGAAATTT
CATGGGTTGGTGGTGTGAGCAATGCGGAGATTGGGGAAAAACTTGCGTGT
GTTGAATTTGATGGCTGTGTGGAGCTGTGGTGATGAAGTTGCAAGTGCAA
TCGGAAAGTATTGTCCAAACTTAGATACAGTGTTCCTCGGTGGCCACGTG
ATGGTGACTGATGTTGGAATTGAAGCATTGGCAAAAGGATGCTCAAAATT
GCGAAATTTCATGGGTTGGTGGTGTGAGCAATGCGGAGAT
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