prot_M-pyrifera_M_contig6833.16443.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig6833.16443.1
Unique Name	prot_M-pyrifera_M_contig6833.16443.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	590

Homology

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BLAST of mRNA_M-pyrifera_M_contig6833.16443.1 vs. uniprot
Match: D8LRC5_ECTSI (Cyclin_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRC5_ECTSI)

HSP 1 Score: 301 bits (771), Expect = 1.050e-90
Identity = 286/657 (43.53%), Postives = 334/657 (50.84%), Query Frame = 0

Query:    1 MEPFDAERFVDRLVEDD-PSPWRCDGGGQGQAHLWEAPGADPGTGMMTGHSSGSTSAAAKLFLQPIYSWPLASRPQLPMPRPQPPLEAPAHSVFDEV--------------SRGVPFVVPHDPILDALFTPVRATSP---------EIVPT-VTYGLVGVGAAXXXXXXXXXXXXXSSNIHNDGVVPRFEPAPVYNIPPPVDV---FPAAVRIPTAPLPLKRSLGVGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGAKASSTIV-------------PLTGADGFSD-EYDDQQHAFLRRQEVALFVGPGYLAGPGRPGLVTPAERTSVVAWLCEVHAAAPAASCGGGARTSFAGAAHLRVAAAASLALASKYEDTQAASLWGVAAASALANSACXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVGMLGXXXXXXXXXXX------------DVRAARKELAAMELRVASALGFRLTVPTALSFLGVFLRRADALGY-LARGAGSERVREEAQQILLCVLRDACSLEHPPSALAAAALYWASCVTAPGAAAPASFSFFAVTGYQLERLCRCLRDMEGVRTGGGRRH-------------GLSVGGGGXXXXXDWAGETFPEHAERSLFDTGGGHPAITAL 589
            MEPFDAERFVDRLVED  P+ W   G   G   +WE                     AAKLF QP++++             QP L                         S+ +P +VPHDPILDA+FTP RA  P         E  P  VT GLV V +               +   N+  +  F P  +YNIPP       + A++++P APL   R    G                                               + S +               PLTGAD  S  EYDD++HAFLRRQE AL  G  Y+ G     +V PA R++ V WL  +H A      GGG       A  +++A AA L LASKY+D                    XXXXXXXXXXXXXXXXXXXXXXXXX     G+LG       XXXX            DVRAARKELAA E++VASALGFRLTVPT+LSFLGVFLRRA+ LGY LA G G ERVR EA+QILLC+LR++CSLEHPPSALAA+ALYWASCVT PGAA P SF+F AVTGY+LE+LC CLRDME VRTGGGRR+                     XXXXXDWAG  FPEHA+ SLF  GGGHPAI AL
Sbjct:    1 MEPFDAERFVDRLVEDPAPTAWGRGGLVGGGGRVWEX------XXXXXXXXXXXXXXAAKLF-QPVFNF----------DEHQPYLVGDGGGYXXXXXXXXXXXXXXXXXXSQDMPMIVPHDPILDAIFTPCRAVLPSTHHYHHPAEAAPVAVTCGLVRVPSGGRF----------GAGKKNE--IAAFRPELLYNIPPXXXXEVSYAASLQVPMAPL---RQPSGGRRLYSSSPPRGRVMIQSAERSPAAAAARLVAVATYLNKEENSNNIPVEFSPSXXXXXXXXXXXXXXXPLTGADAHSSREYDDERHAFLRRQEAALAAGARYITGGV---VVDPAARSAAVDWLSRLHGAKTVWGDGGGGVLLLGPA--VKLAGAACLVLASKYQDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFF--GVLGAGDSLGLXXXXXXXXXXXXXXNADVRAARKELAATEMQVASALGFRLTVPTSLSFLGVFLRRAEGLGYVLADGPGRERVRREAEQILLCMLRESCSLEHPPSALAASALYWASCVTTPGAAPPTSFAFLAVTGYELEQLCCCLRDMEAVRTGGGRRYDGAGSFASCSSPAAXXXXXXXXXXXXDWAGAAFPEHADNSLFGAGGGHPAIAAL 618

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig6833.16443.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig6833.16443.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LRC5_ECTSI	1.050e-90	43.53	Cyclin_C domain-containing protein n=2 Tax=Ectocar...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004367	Cyclin, C-terminal domain	SMART	SM01332	Cyclin_C_2	coord: 442..586 e-value: 9.9E-7 score: 38.4
IPR004367	Cyclin, C-terminal domain	PFAM	PF02984	Cyclin_C	coord: 442..539 e-value: 1.9E-8 score: 34.4
None	No IPR available	GENE3D	1.10.472.10		coord: 430..546 e-value: 5.3E-13 score: 51.2
IPR039361	Cyclin	PANTHER	PTHR10177	CYCLINE	coord: 333..538
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 425..540
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 262..357

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig6833	contig	M-pyrifera_M_contig6833:4475..6646 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig6833.16443.1	mRNA_M-pyrifera_M_contig6833.16443.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig6833 4475..6646 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig6833.16443.1 ID=prot_M-pyrifera_M_contig6833.16443.1|Name=mRNA_M-pyrifera_M_contig6833.16443.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=590bp
MEPFDAERFVDRLVEDDPSPWRCDGGGQGQAHLWEAPGADPGTGMMTGHS
SGSTSAAAKLFLQPIYSWPLASRPQLPMPRPQPPLEAPAHSVFDEVSRGV
PFVVPHDPILDALFTPVRATSPEIVPTVTYGLVGVGAAAQQQQQHQQLGG
GSSNIHNDGVVPRFEPAPVYNIPPPVDVFPAAVRIPTAPLPLKRSLGVGG
NGGGGGGGGRRRVSSSLPAAAAAAAAAATAAANTAAAAGGGGRAGAKASS
TIVPLTGADGFSDEYDDQQHAFLRRQEVALFVGPGYLAGPGRPGLVTPAE
RTSVVAWLCEVHAAAPAASCGGGARTSFAGAAHLRVAAAASLALASKYED
TQAASLWGVAAASALANSACCCSCSGGRGGGGGEGCDCFCGSGGGGSGCV
GMLGGGGGGGGGGGGDVRAARKELAAMELRVASALGFRLTVPTALSFLGV
FLRRADALGYLARGAGSERVREEAQQILLCVLRDACSLEHPPSALAAAAL
YWASCVTAPGAAAPASFSFFAVTGYQLERLCRCLRDMEGVRTGGGRRHGL
SVGGGGGDGGGDWAGETFPEHAERSLFDTGGGHPAITAL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004367	Cyclin_C-dom
IPR039361	Cyclin
IPR036915	Cyclin-like_sf