mRNA_M-pyrifera_M_contig6833.16443.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6833.16443.1
Unique NamemRNA_M-pyrifera_M_contig6833.16443.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig6833.16443.1 vs. uniprot
Match: D8LRC5_ECTSI (Cyclin_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRC5_ECTSI)

HSP 1 Score: 301 bits (771), Expect = 1.050e-90
Identity = 286/657 (43.53%), Postives = 334/657 (50.84%), Query Frame = 1 
Query:    1 MEPFDAERFVDRLVEDD-PSPWRCDGGGQGQAHLWEAPGADPGTGMMTGHSSGSTSAAAKLFLQPIYSWPLASRPQLPMPRPQPPLEAPAHSVFDEV--------------SRGVPFVVPHDPILDALFTPVRATSP---------EIVPT-VTYGLVGVGAAXXXXXXXXXXXXXSSNIHNDGVVPRFEPAPVYNIPPPVDV---FPAAVRIPTAPLPLKRSLGVGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGAKASSTIV-------------PLTGADGFSD-EYDDQQHAFLRRQEVALFVGPGYLAGPGRPGLVTPAERTSVVAWLCEVHAAAPAASCGGGARTSFAGAAHLRVAAAASLALASKYEDTQAASLWGVAAASALANSACXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVGMLGXXXXXXXXXXX------------DVRAARKELAAMELRVASALGFRLTVPTALSFLGVFLRRADALGY-LARGAGSERVREEAQQILLCVLRDACSLEHPPSALAAAALYWASCVTAPGAAAPASFSFFAVTGYQLERLCRCLRDMEGVRTGGGRRH-------------GLSVGGGGXXXXXDWAGETFPEHAERSLFDTGGGHPAITAL 1767
            MEPFDAERFVDRLVED  P+ W   G   G   +WE                     AAKLF QP++++             QP L                         S+ +P +VPHDPILDA+FTP RA  P         E  P  VT GLV V +               +   N+  +  F P  +YNIPP       + A++++P APL   R    G                                               + S +               PLTGAD  S  EYDD++HAFLRRQE AL  G  Y+ G     +V PA R++ V WL  +H A      GGG       A  +++A AA L LASKY+D                    XXXXXXXXXXXXXXXXXXXXXXXXX     G+LG       XXXX            DVRAARKELAA E++VASALGFRLTVPT+LSFLGVFLRRA+ LGY LA G G ERVR EA+QILLC+LR++CSLEHPPSALAA+ALYWASCVT PGAA P SF+F AVTGY+LE+LC CLRDME VRTGGGRR+                     XXXXXDWAG  FPEHA+ SLF  GGGHPAI AL
Sbjct:    1 MEPFDAERFVDRLVEDPAPTAWGRGGLVGGGGRVWEX------XXXXXXXXXXXXXXAAKLF-QPVFNF----------DEHQPYLVGDGGGYXXXXXXXXXXXXXXXXXXSQDMPMIVPHDPILDAIFTPCRAVLPSTHHYHHPAEAAPVAVTCGLVRVPSGGRF----------GAGKKNE--IAAFRPELLYNIPPXXXXEVSYAASLQVPMAPL---RQPSGGRRLYSSSPPRGRVMIQSAERSPAAAAARLVAVATYLNKEENSNNIPVEFSPSXXXXXXXXXXXXXXXPLTGADAHSSREYDDERHAFLRRQEAALAAGARYITGGV---VVDPAARSAAVDWLSRLHGAKTVWGDGGGGVLLLGPA--VKLAGAACLVLASKYQDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFF--GVLGAGDSLGLXXXXXXXXXXXXXXNADVRAARKELAATEMQVASALGFRLTVPTSLSFLGVFLRRAEGLGYVLADGPGRERVRREAEQILLCMLRESCSLEHPPSALAASALYWASCVTTPGAAPPTSFAFLAVTGYELEQLCCCLRDMEAVRTGGGRRYDGAGSFASCSSPAAXXXXXXXXXXXXDWAGAAFPEHADNSLFGAGGGHPAIAAL 618
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6833.16443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRC5_ECTSI1.050e-9043.53Cyclin_C domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6833contigM-pyrifera_M_contig6833:4475..6646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCyclin, C-terminal domain
Ec32 orthologEc-06_003040.1
Exons4
Model size1770
Cds size1770
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6833.16443.1prot_M-pyrifera_M_contig6833.16443.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6833 4475..6646 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.3152785-CDS-M-pyrifera_M_contig6833:4474..52781622816574.3152785-CDS-M-pyrifera_M_contig6833:4474..5278Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6833 4475..5278 -
1692278055.1720705-CDS-M-pyrifera_M_contig6833:4474..52781692278055.1720705-CDS-M-pyrifera_M_contig6833:4474..5278Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6833 4475..5278 -
1622816574.3282046-CDS-M-pyrifera_M_contig6833:5392..55961622816574.3282046-CDS-M-pyrifera_M_contig6833:5392..5596Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6833 5393..5596 -
1692278055.1830204-CDS-M-pyrifera_M_contig6833:5392..55961692278055.1830204-CDS-M-pyrifera_M_contig6833:5392..5596Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6833 5393..5596 -
1622816574.3397875-CDS-M-pyrifera_M_contig6833:5834..59701622816574.3397875-CDS-M-pyrifera_M_contig6833:5834..5970Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6833 5835..5970 -
1692278055.1925519-CDS-M-pyrifera_M_contig6833:5834..59701692278055.1925519-CDS-M-pyrifera_M_contig6833:5834..5970Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6833 5835..5970 -
1622816574.3500319-CDS-M-pyrifera_M_contig6833:6020..66461622816574.3500319-CDS-M-pyrifera_M_contig6833:6020..6646Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6833 6021..6646 -
1692278055.2019415-CDS-M-pyrifera_M_contig6833:6020..66461692278055.2019415-CDS-M-pyrifera_M_contig6833:6020..6646Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6833 6021..6646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6833.16443.1

>prot_M-pyrifera_M_contig6833.16443.1 ID=prot_M-pyrifera_M_contig6833.16443.1|Name=mRNA_M-pyrifera_M_contig6833.16443.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=590bp
MEPFDAERFVDRLVEDDPSPWRCDGGGQGQAHLWEAPGADPGTGMMTGHS
SGSTSAAAKLFLQPIYSWPLASRPQLPMPRPQPPLEAPAHSVFDEVSRGV
PFVVPHDPILDALFTPVRATSPEIVPTVTYGLVGVGAAAQQQQQHQQLGG
GSSNIHNDGVVPRFEPAPVYNIPPPVDVFPAAVRIPTAPLPLKRSLGVGG
NGGGGGGGGRRRVSSSLPAAAAAAAAAATAAANTAAAAGGGGRAGAKASS
TIVPLTGADGFSDEYDDQQHAFLRRQEVALFVGPGYLAGPGRPGLVTPAE
RTSVVAWLCEVHAAAPAASCGGGARTSFAGAAHLRVAAAASLALASKYED
TQAASLWGVAAASALANSACCCSCSGGRGGGGGEGCDCFCGSGGGGSGCV
GMLGGGGGGGGGGGGDVRAARKELAAMELRVASALGFRLTVPTALSFLGV
FLRRADALGYLARGAGSERVREEAQQILLCVLRDACSLEHPPSALAAAAL
YWASCVTAPGAAAPASFSFFAVTGYQLERLCRCLRDMEGVRTGGGRRHGL
SVGGGGGDGGGDWAGETFPEHAERSLFDTGGGHPAITAL*
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mRNA from alignment at M-pyrifera_M_contig6833:4475..6646-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6833.16443.1 ID=mRNA_M-pyrifera_M_contig6833.16443.1|Name=mRNA_M-pyrifera_M_contig6833.16443.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2172bp|location=Sequence derived from alignment at M-pyrifera_M_contig6833:4475..6646- (Macrocystis pyrifera P11B4 male)
ATGGAGCCCTTCGACGCGGAGCGCTTCGTCGACCGCCTCGTCGAGGATGA
TCCCTCGCCGTGGCGCTGCGACGGGGGCGGCCAAGGGCAGGCCCACCTAT
GGGAAGCGCCAGGAGCCGACCCCGGAACGGGGATGATGACTGGACACTCG
TCTGGCTCTACCTCGGCAGCGGCGAAACTATTCCTCCAGCCGATCTACAG
CTGGCCCCTGGCTTCTCGGCCGCAGCTACCGATGCCGCGGCCGCAGCCGC
CGCTGGAGGCCCCCGCGCACAGCGTCTTCGATGAGGTGAGCCGAGGCGTG
CCCTTCGTGGTGCCCCACGACCCCATCCTCGACGCGCTGTTCACCCCGGT
CCGGGCAACGTCCCCGGAAATTGTGCCGACAGTTACTTATGGGCTGGTGG
GGGTGGGGGCGGCCGCGCAGCAGCAACAGCAACACCAGCAGCTTGGAGGG
GGAAGTTCGAATATCCACAACGACGGCGTCGTCCCGAGGTTTGAACCCGC
ACCTGTCTACAACATCCCCCCCCCGGTGGACGTCTTCCCCGCTGCTGTGC
GCATCCCGACGGCCCCGTTGCCGCTGAAGCGGAGCTTGGGCGTCGGCGGT
AACGGCGGCGGAGGCGGCGGTGGCGGGTTCTGCCTTCTAGCTTCCCCATC
TGGTGCCAAAGTAATATTCGGCTCAGAAGAAGAAGGGTTTCCTCCTCATT
ACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCTGCTGCTAATA
CAGCAGCAGCAGCAGGAGGAGGAGGACGAGCAGGAGCAAAGGCATCCTCA
ACGATCGTTCCCGTTTGCGACTATAGATACTGTTTTCCAGCAGCAGCAGC
AGCAGCAGCAGCAACAGCAGCCAAAGGAGATTCCTGGTGAAGTTTTCGGC
GGCGCTGATGTTTTTTCGGCCACCACGACCACCGCCGTCTCTTCCGTTGC
CACCATCTCATCCGCTACCGCTACCATCGCCGCCGCTACTAGGGCCGCGG
CTACCAGCGCCGTCGCCGTCGCTAGCGTCTCCACCCCCGCTCCCCCCCAG
CTCACGGGGGCCGACGGGTTCTCGGACGAGTACGACGACCAGCAGCACGC
CTTCCTGCGCCGGCAGGAGGTCGCCCTCTTCGTCGGCCCGGGGTACCTCG
CTGGGCCCGGACGCCCGGGGCTCGTGACTCCGGCCGAGAGGACCTCCGTC
GTCGCCTGGCTCTGCGAGGTGCACGCGGCCGCTCCCGCCGCGTCTTGTGG
CGGAGTCACCAGCGTCGGCAGCGATGGCGGCGGCAGCGGTGGCAGTAGCC
CGCCGCTGTCCCTGGAGTCGCTGTTCCTTGCCGTGAACCTCCTGGACCGC
TTCCTGTCGACGGCGGAGGGGGCGAGGACGTCGTTTGCCGGGGCGGCGCA
CTTGAGGGTTGCCGCCGCCGCGTCGCTGGCCCTAGCCTCAAAGTACGAGG
ACACCCAGGCGGCCTCGCTGTGGGGCGTGGCAGCTGCGTCGGCTCTGGCC
AACAGCGCCTGCTGCTGCAGCTGTTCCGGCGGCCGTGGCGGCGGAGGCGG
GGAGGGCTGTGATTGCTTCTGCGGCAGCGGCGGTGGTGGTTCCGGCTGTG
TCGGAATGCTGGGAGGGGGCGGTGGCGGTGGCGGTGGTGGGGGTGGGGAT
GTGCGCGCTGCGAGGAAGGAGCTGGCGGCGATGGAGCTAAGGGTGGCCTC
GGCGCTAGGGTTCCGCCTTACCGTCCCGACGGCGTTGTCGTTCCTCGGAG
TGTTCCTGCGCCGCGCGGATGCGCTGGGGTACCTCGCTAGGGGAGCCGGG
TCCGAGAGGGTTCGCGAGGAGGCGCAGCAGATTCTTCTCTGCGTGCTGCG
CGACGCCTGCTCGCTGGAACACCCGCCCTCCGCGCTCGCTGCGGCGGCCC
TGTACTGGGCCTCGTGCGTCACCGCCCCTGGCGCAGCCGCGCCGGCGTCC
TTCTCGTTCTTCGCCGTGACGGGGTACCAGCTGGAGCGGCTCTGCCGCTG
CTTGCGCGACATGGAAGGCGTGCGGACGGGGGGTGGGAGGAGGCACGGCC
TGTCAGTGGGCGGAGGTGGCGGCGATGGCGGCGGCGATTGGGCCGGCGAG
ACTTTCCCCGAGCACGCAGAAAGGAGCCTGTTTGATACCGGTGGAGGGCA
CCCAGCCATTACGGCGCTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6833:4475..6646-

>mRNA_M-pyrifera_M_contig6833.16443.1 ID=mRNA_M-pyrifera_M_contig6833.16443.1|Name=mRNA_M-pyrifera_M_contig6833.16443.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3540bp|location=Sequence derived from alignment at M-pyrifera_M_contig6833:4475..6646- (Macrocystis pyrifera P11B4 male)
ATGGAGCCCTTCGACGCGGAGCGCTTCGTCGACCGCCTCGTCGAGGATGA
TCCCTCGCCGTGGCGCTGCGACGGGGGCGGCCAAGGGCAGGCCCACCTAT
GGGAAGCGCCAGGAGCCGACCCCGGAACGGGGATGATGACTGGACACTCG
TCTGGCTCTACCTCGGCAGCGGCGAAACTATTCCTCCAGCCGATCTACAG
CTGGCCCCTGGCTTCTCGGCCGCAGCTACCGATGCCGCGGCCGCAGCCGC
CGCTGGAGGCCCCCGCGCACAGCGTCTTCGATGAGGTGAGCCGAGGCGTG
CCCTTCGTGGTGCCCCACGACCCCATCCTCGACGCGCTGTTCACCCCGGT
CCGGGCAACGTCCCCGGAAATTGTGCCGACAGTTACTTATGGGCTGGTGG
GGGTGGGGGCGGCCGCGCAGCAGCAACAGCAACACCAGCAGCTTGGAGGG
GGAAGTTCGAATATCCACAACGACGGCGTCGTCCCGAGGTTTGAACCCGC
ACCTGTCTACAACATCCCCCCCCCGGTGGACGTCTTCCCCGCTGCTGTGC
GCATCCCGACGGCCCCGTTGCCGCTGAAGCGGAGCTTGGGCGTCGGCGGT
AACGGCGGCGGAGGCGGCGGTGGCGGATGGAGCCCTTCGACGCGGAGCGC
TTCGTCGACCGCCTCGTCGAGGATGATCCCTCGCCGTGGCGCTGCGACGG
GGGCGGCCAAGGGCAGGCCCACCTATGGGAAGCGCCAGGAGCCGACCCCG
GAACGGGGATGATGACTGGACACTCGTCTGGCTCTACCTCGGCAGCGGCG
AAACTATTCCTCCAGCCGATCTACAGCTGGCCCCTGGCTTCTCGGCCGCA
GCTACCGATGCCGCGGCCGCAGCCGCCGCTGGAGGCCCCCGCGCACAGCG
TCTTCGATGAGGTGAGCCGAGGCGTGCCCTTCGTGGTGCCCCACGACCCC
ATCCTCGACGCGCTGTTCACCCCGGTCCGGGCAACGTCCCCGGAAATTGT
GCCGACAGTTACTTATGGGCTGGTGGGGGTGGGGGCGGCCGCGCAGCAGC
AACAGCAACACCAGCAGCTTGGAGGGGGAAGTTCGAATATCCACAACGAC
GGCGTCGTCCCGAGGTTTGAACCCGCACCTGTCTACAACATCCCCCCCCC
GGTGGACGTCTTCCCCGCTGCTGTGCGCATCCCGACGGCCCCGTTGCCGC
TGAAGCGGAGCTTGGGCGTCGGCGGTAACGGCGGCGGAGGCGGCGGTGGC
GGAAGAAGAAGGGTTTCCTCCTCATTACCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAACAGCTGCTGCTAATACAGCAGCAGCAGCAGGAGGAGGAG
GACGAGCAGGAGCAAAGGCATCCTCAACGATCGTTCCCAAGAAGAAGGGT
TTCCTCCTCATTACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAG
CTGCTGCTAATACAGCAGCAGCAGCAGGAGGAGGAGGACGAGCAGGAGCA
AAGGCATCCTCAACGATCGTTCCCCTCACGGGGGCCGACGGGTTCTCGGA
CGAGTACGACGACCAGCAGCACGCCTTCCTGCGCCGGCAGGAGGTCGCCC
TCTTCGTCGGCCCGGGGTACCTCGCTGGGCCCGGACGCCCGGGGCTCGTG
ACTCCGGCCGAGAGGACCTCCGTCGTCGCCTGGCTCTGCGAGGTGCACGC
GGCCGCTCCCGCCGCGTCTTGTGGCGGACTCACGGGGGCCGACGGGTTCT
CGGACGAGTACGACGACCAGCAGCACGCCTTCCTGCGCCGGCAGGAGGTC
GCCCTCTTCGTCGGCCCGGGGTACCTCGCTGGGCCCGGACGCCCGGGGCT
CGTGACTCCGGCCGAGAGGACCTCCGTCGTCGCCTGGCTCTGCGAGGTGC
ACGCGGCCGCTCCCGCCGCGTCTTGTGGCGGAGGGGCGAGGACGTCGTTT
GCCGGGGCGGCGCACTTGAGGGTTGCCGCCGCCGCGTCGCTGGCCCTAGC
CTCAAAGTACGAGGACACCCAGGCGGCCTCGCTGTGGGGCGTGGCAGCTG
CGTCGGCTCTGGCCAACAGCGCCTGCTGCTGCAGCTGTTCCGGCGGCCGT
GGCGGCGGAGGCGGGGAGGGCTGTGATTGCTTCTGCGGCAGCGGCGGTGG
TGGTTCCGGCTGTGTCGGAATGCTGGGAGGGGGCGGTGGCGGTGGCGGTG
GTGGGGGTGGGGATGTGCGCGCTGCGAGGAAGGAGCTGGCGGCGATGGAG
CTAAGGGTGGCCTCGGCGCTAGGGTTCCGCCTTACCGTCCCGACGGCGTT
GTCGTTCCTCGGAGTGTTCCTGCGCCGCGCGGATGCGCTGGGGTACCTCG
CTAGGGGAGCCGGGTCCGAGAGGGTTCGCGAGGAGGCGCAGCAGATTCTT
CTCTGCGTGCTGCGCGACGCCTGCTCGCTGGAACACCCGCCCTCCGCGCT
CGCTGCGGCGGCCCTGTACTGGGCCTCGTGCGTCACCGCCCCTGGCGCAG
CCGCGCCGGCGTCCTTCTCGTTCTTCGCCGTGACGGGGTACCAGCTGGAG
CGGCTCTGCCGCTGCTTGCGCGACATGGAAGGCGTGCGGACGGGGGGTGG
GAGGAGGCACGGCCTGTCAGTGGGCGGAGGTGGCGGCGATGGCGGCGGCG
ATTGGGCCGGCGAGACTTTCCCCGAGCACGCAGAAAGGAGCCTGTTTGAT
ACCGGTGGAGGGCACCCAGCCATTACGGCGCTCTGAGGGGCGAGGACGTC
GTTTGCCGGGGCGGCGCACTTGAGGGTTGCCGCCGCCGCGTCGCTGGCCC
TAGCCTCAAAGTACGAGGACACCCAGGCGGCCTCGCTGTGGGGCGTGGCA
GCTGCGTCGGCTCTGGCCAACAGCGCCTGCTGCTGCAGCTGTTCCGGCGG
CCGTGGCGGCGGAGGCGGGGAGGGCTGTGATTGCTTCTGCGGCAGCGGCG
GTGGTGGTTCCGGCTGTGTCGGAATGCTGGGAGGGGGCGGTGGCGGTGGC
GGTGGTGGGGGTGGGGATGTGCGCGCTGCGAGGAAGGAGCTGGCGGCGAT
GGAGCTAAGGGTGGCCTCGGCGCTAGGGTTCCGCCTTACCGTCCCGACGG
CGTTGTCGTTCCTCGGAGTGTTCCTGCGCCGCGCGGATGCGCTGGGGTAC
CTCGCTAGGGGAGCCGGGTCCGAGAGGGTTCGCGAGGAGGCGCAGCAGAT
TCTTCTCTGCGTGCTGCGCGACGCCTGCTCGCTGGAACACCCGCCCTCCG
CGCTCGCTGCGGCGGCCCTGTACTGGGCCTCGTGCGTCACCGCCCCTGGC
GCAGCCGCGCCGGCGTCCTTCTCGTTCTTCGCCGTGACGGGGTACCAGCT
GGAGCGGCTCTGCCGCTGCTTGCGCGACATGGAAGGCGTGCGGACGGGGG
GTGGGAGGAGGCACGGCCTGTCAGTGGGCGGAGGTGGCGGCGATGGCGGC
GGCGATTGGGCCGGCGAGACTTTCCCCGAGCACGCAGAAAGGAGCCTGTT
TGATACCGGTGGAGGGCACCCAGCCATTACGGCGCTCTGA
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