prot_M-pyrifera_M_contig66899.16191.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig66899.16191.1
Unique Nameprot_M-pyrifera_M_contig66899.16191.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length47
Homology
BLAST of mRNA_M-pyrifera_M_contig66899.16191.1 vs. uniprot
Match: UPI0019CA08B8 (Uncharacterized protein n=1 Tax=Actinomadura cremea TaxID=1991 RepID=UPI0019CA08B8)

HSP 1 Score: 93.6 bits (231), Expect = 3.160e-24
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQIMG 46
            MPTIKQLIRNTRQPIRNVTKSPAL GCPQRRGTCTRVYVRLVQIMG
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLVQIMG 46          
BLAST of mRNA_M-pyrifera_M_contig66899.16191.1 vs. uniprot
Match: A0A5J5V8D6_GOSBA (Uncharacterized protein n=5 Tax=Gossypium TaxID=3633 RepID=A0A5J5V8D6_GOSBA)

HSP 1 Score: 92.4 bits (228), Expect = 6.170e-24
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 0
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQIMG 46
            MPTIKQLIRN RQPIRNVTKSPALGGCPQRRGTCT VYVRLVQIMG
Sbjct:    1 MPTIKQLIRNARQPIRNVTKSPALGGCPQRRGTCTSVYVRLVQIMG 46          
BLAST of mRNA_M-pyrifera_M_contig66899.16191.1 vs. uniprot
Match: A0A5D2ZVB5_GOSMU (Uncharacterized protein n=1 Tax=Gossypium mustelinum TaxID=34275 RepID=A0A5D2ZVB5_GOSMU)

HSP 1 Score: 92.4 bits (228), Expect = 9.060e-24
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 0
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQIM 45
            MPTIKQLIRN RQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQIM
Sbjct:    1 MPTIKQLIRNARQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQIM 45          
BLAST of mRNA_M-pyrifera_M_contig66899.16191.1 vs. uniprot
Match: A0A835J6F2_9ROSI (Uncharacterized protein n=1 Tax=Salix dunnii TaxID=1413687 RepID=A0A835J6F2_9ROSI)

HSP 1 Score: 92.4 bits (228), Expect = 9.300e-24
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 0
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQI 44
            MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQI
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQI 44          
BLAST of mRNA_M-pyrifera_M_contig66899.16191.1 vs. uniprot
Match: A0A5J5QDS4_GOSBA (Uncharacterized protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A5J5QDS4_GOSBA)

HSP 1 Score: 91.7 bits (226), Expect = 1.250e-23
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 0
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQIMG 46
            MPTIKQL RNTRQPIRNVTKSPAL GCPQRRGTCTRVYVRLVQIMG
Sbjct:    1 MPTIKQLTRNTRQPIRNVTKSPALEGCPQRRGTCTRVYVRLVQIMG 46          
BLAST of mRNA_M-pyrifera_M_contig66899.16191.1 vs. uniprot
Match: A0A3T0UB66_RHEOF (Ribosomal protein S12 n=5 Tax=Mesangiospermae TaxID=1437183 RepID=A0A3T0UB66_RHEOF)

HSP 1 Score: 91.3 bits (225), Expect = 2.080e-23
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 0
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQIM 45
            MPTIKQLIRNTRQPIRNVTKSPAL GCPQRRGTCTRVYVRLVQIM
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLVQIM 45          
BLAST of mRNA_M-pyrifera_M_contig66899.16191.1 vs. uniprot
Match: A0A0H3W313_FRAVE (Ribosomal protein S12 n=7 Tax=rosids TaxID=71275 RepID=A0A0H3W313_FRAVE)

HSP 1 Score: 90.9 bits (224), Expect = 2.520e-23
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQ 43
            MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQ
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQ 43          
BLAST of mRNA_M-pyrifera_M_contig66899.16191.1 vs. uniprot
Match: A0A5D2EZF8_GOSDA (Uncharacterized protein n=1 Tax=Gossypium darwinii TaxID=34276 RepID=A0A5D2EZF8_GOSDA)

HSP 1 Score: 90.9 bits (224), Expect = 4.000e-23
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0
Query:    2 PTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQIMG 46
            PTIKQLIRN+RQPIRNV KSPALGGCPQRRGTCTRVYVRLVQIMG
Sbjct:   21 PTIKQLIRNSRQPIRNVMKSPALGGCPQRRGTCTRVYVRLVQIMG 65          
BLAST of mRNA_M-pyrifera_M_contig66899.16191.1 vs. uniprot
Match: A0A343CWK4_9ROSI (Ribosomal protein S12 n=1 Tax=Vatica odorata TaxID=64582 RepID=A0A343CWK4_9ROSI)

HSP 1 Score: 90.1 bits (222), Expect = 5.090e-23
Identity = 43/46 (93.48%), Postives = 43/46 (93.48%), Query Frame = 0
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQIMG 46
            MPTIKQLIRN RQPIRN TKSPAL GCPQRRGTCTRVYVRLVQIMG
Sbjct:    1 MPTIKQLIRNARQPIRNATKSPALRGCPQRRGTCTRVYVRLVQIMG 46          
BLAST of mRNA_M-pyrifera_M_contig66899.16191.1 vs. uniprot
Match: A0A4D6Q0G2_9ROSA (30S ribosomal protein S12, chloroplastic n=7 Tax=Rubus TaxID=23216 RepID=A0A4D6Q0G2_9ROSA)

HSP 1 Score: 92.4 bits (228), Expect = 7.190e-23
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 0
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQIM 45
            MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQ M
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQTM 45          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66899.16191.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019CA08B83.160e-2497.83Uncharacterized protein n=1 Tax=Actinomadura creme... [more]
A0A5J5V8D6_GOSBA6.170e-2495.65Uncharacterized protein n=5 Tax=Gossypium TaxID=36... [more]
A0A5D2ZVB5_GOSMU9.060e-2497.78Uncharacterized protein n=1 Tax=Gossypium mustelin... [more]
A0A835J6F2_9ROSI9.300e-24100.00Uncharacterized protein n=1 Tax=Salix dunnii TaxID... [more]
A0A5J5QDS4_GOSBA1.250e-2395.65Uncharacterized protein n=2 Tax=Gossypium TaxID=36... [more]
A0A3T0UB66_RHEOF2.080e-2397.78Ribosomal protein S12 n=5 Tax=Mesangiospermae TaxI... [more]
A0A0H3W313_FRAVE2.520e-23100.00Ribosomal protein S12 n=7 Tax=rosids TaxID=71275 R... [more]
A0A5D2EZF8_GOSDA4.000e-2395.56Uncharacterized protein n=1 Tax=Gossypium darwinii... [more]
A0A343CWK4_9ROSI5.090e-2393.48Ribosomal protein S12 n=1 Tax=Vatica odorata TaxID... [more]
A0A4D6Q0G2_9ROSA7.190e-2397.7830S ribosomal protein S12, chloroplastic n=7 Tax=R... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 1..42
e-value: 1.9E-11
score: 45.6
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66899contigM-pyrifera_M_contig66899:298..438 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66899.16191.1mRNA_M-pyrifera_M_contig66899.16191.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig66899 298..438 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig66899.16191.1 ID=prot_M-pyrifera_M_contig66899.16191.1|Name=mRNA_M-pyrifera_M_contig66899.16191.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=47bp
MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQIMG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold