mRNA_M-pyrifera_M_contig66899.16191.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66899.16191.1
Unique NamemRNA_M-pyrifera_M_contig66899.16191.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66899.16191.1 vs. uniprot
Match: A0A6N2AT95_SOLCI (Uncharacterized protein n=2 Tax=Solanum chilense TaxID=4083 RepID=A0A6N2AT95_SOLCI)

HSP 1 Score: 95.1 bits (235), Expect = 1.250e-24
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = -1 
Query:    1 AHDLNESHIHPSTCSSSLRTSPQSGGFRDISDWLSCVSNKLFNSWH 138
            AHDLNESHIHPSTCSS+LR  P+SGGFRDISDWLSC+SNKLFNSWH
Sbjct:   30 AHDLNESHIHPSTCSSTLRAPPKSGGFRDISDWLSCISNKLFNSWH 75
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BLAST of mRNA_M-pyrifera_M_contig66899.16191.1 vs. uniprot
Match: UPI0019CA08B8 (Uncharacterized protein n=1 Tax=Actinomadura cremea TaxID=1991 RepID=UPI0019CA08B8)

HSP 1 Score: 93.6 bits (231), Expect = 3.160e-24
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQIMG 138
            MPTIKQLIRNTRQPIRNVTKSPAL GCPQRRGTCTRVYVRLVQIMG
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLVQIMG 46
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BLAST of mRNA_M-pyrifera_M_contig66899.16191.1 vs. uniprot
Match: A0A830CBX7_9LAMI (30S ribosomal protein s12 chloroplastic n=2 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CBX7_9LAMI)

HSP 1 Score: 93.6 bits (231), Expect = 3.240e-24
Identity = 40/45 (88.89%), Postives = 44/45 (97.78%), Query Frame = -1 
Query:    1 HDLNESHIHPSTCSSSLRTSPQSGGFRDISDWLSCVSNKLFNSWH 135
            HDLNESHIHPSTCSS+LRTSP+ GGFRDIS+WLSC+SNKLFNSWH
Sbjct:   14 HDLNESHIHPSTCSSTLRTSPKRGGFRDISNWLSCISNKLFNSWH 58
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BLAST of mRNA_M-pyrifera_M_contig66899.16191.1 vs. uniprot
Match: A0A5J5V8D6_GOSBA (Uncharacterized protein n=5 Tax=Gossypium TaxID=3633 RepID=A0A5J5V8D6_GOSBA)

HSP 1 Score: 92.4 bits (228), Expect = 6.170e-24
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQIMG 138
            MPTIKQLIRN RQPIRNVTKSPALGGCPQRRGTCT VYVRLVQIMG
Sbjct:    1 MPTIKQLIRNARQPIRNVTKSPALGGCPQRRGTCTSVYVRLVQIMG 46
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BLAST of mRNA_M-pyrifera_M_contig66899.16191.1 vs. uniprot
Match: S8DA82_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8DA82_9LAMI)

HSP 1 Score: 94.0 bits (232), Expect = 7.410e-24
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = -1 
Query:    1 AHDLNESHIHPSTCSSSLRTSPQSGGFRDISDWLSCVSNKLFNSWH 138
            AHDLNESHIHPSTCSS+LRTSP+ GGFRDIS+WLSC+SNKLFN WH
Sbjct:   56 AHDLNESHIHPSTCSSTLRTSPKGGGFRDISNWLSCISNKLFNGWH 101
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BLAST of mRNA_M-pyrifera_M_contig66899.16191.1 vs. uniprot
Match: A0A5D2ZVB5_GOSMU (Uncharacterized protein n=1 Tax=Gossypium mustelinum TaxID=34275 RepID=A0A5D2ZVB5_GOSMU)

HSP 1 Score: 92.4 bits (228), Expect = 9.060e-24
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQIM 135
            MPTIKQLIRN RQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQIM
Sbjct:    1 MPTIKQLIRNARQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQIM 45
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BLAST of mRNA_M-pyrifera_M_contig66899.16191.1 vs. uniprot
Match: A0A835J6F2_9ROSI (Uncharacterized protein n=1 Tax=Salix dunnii TaxID=1413687 RepID=A0A835J6F2_9ROSI)

HSP 1 Score: 92.4 bits (228), Expect = 9.300e-24
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQI 132
            MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQI
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQI 44
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BLAST of mRNA_M-pyrifera_M_contig66899.16191.1 vs. uniprot
Match: A0A5J5QDS4_GOSBA (Uncharacterized protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A5J5QDS4_GOSBA)

HSP 1 Score: 91.7 bits (226), Expect = 1.250e-23
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQIMG 138
            MPTIKQL RNTRQPIRNVTKSPAL GCPQRRGTCTRVYVRLVQIMG
Sbjct:    1 MPTIKQLTRNTRQPIRNVTKSPALEGCPQRRGTCTRVYVRLVQIMG 46
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BLAST of mRNA_M-pyrifera_M_contig66899.16191.1 vs. uniprot
Match: A0A3T0UB66_RHEOF (Ribosomal protein S12 n=5 Tax=Mesangiospermae TaxID=1437183 RepID=A0A3T0UB66_RHEOF)

HSP 1 Score: 91.3 bits (225), Expect = 2.080e-23
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQIM 135
            MPTIKQLIRNTRQPIRNVTKSPAL GCPQRRGTCTRVYVRLVQIM
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLVQIM 45
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BLAST of mRNA_M-pyrifera_M_contig66899.16191.1 vs. uniprot
Match: A0A0H3W313_FRAVE (Ribosomal protein S12 n=7 Tax=rosids TaxID=71275 RepID=A0A0H3W313_FRAVE)

HSP 1 Score: 90.9 bits (224), Expect = 2.520e-23
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQ 129
            MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQ
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQ 43
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66899.16191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N2AT95_SOLCI1.250e-2489.13Uncharacterized protein n=2 Tax=Solanum chilense T... [more]
UPI0019CA08B83.160e-2497.83Uncharacterized protein n=1 Tax=Actinomadura creme... [more]
A0A830CBX7_9LAMI3.240e-2488.8930S ribosomal protein s12 chloroplastic n=2 Tax=Ph... [more]
A0A5J5V8D6_GOSBA6.170e-2495.65Uncharacterized protein n=5 Tax=Gossypium TaxID=36... [more]
S8DA82_9LAMI7.410e-2486.96Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]
A0A5D2ZVB5_GOSMU9.060e-2497.78Uncharacterized protein n=1 Tax=Gossypium mustelin... [more]
A0A835J6F2_9ROSI9.300e-24100.00Uncharacterized protein n=1 Tax=Salix dunnii TaxID... [more]
A0A5J5QDS4_GOSBA1.250e-2395.65Uncharacterized protein n=2 Tax=Gossypium TaxID=36... [more]
A0A3T0UB66_RHEOF2.080e-2397.78Ribosomal protein S12 n=5 Tax=Mesangiospermae TaxI... [more]
A0A0H3W313_FRAVE2.520e-23100.00Ribosomal protein S12 n=7 Tax=rosids TaxID=71275 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66899contigM-pyrifera_M_contig66899:298..438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score84.7
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog3885.XP_007157694.1
KEGG koko:K02950
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGs3823T@33090,3GRIK@35493,COG0048@1,KOG1750@2759
COG Functional cat.J
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size141
Cds size141
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816559.1377175-CDS-M-pyrifera_M_contig66899:297..4381622816559.1377175-CDS-M-pyrifera_M_contig66899:297..438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66899 298..438 -
1692278046.4158807-CDS-M-pyrifera_M_contig66899:297..4381692278046.4158807-CDS-M-pyrifera_M_contig66899:297..438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66899 298..438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66899.16191.1prot_M-pyrifera_M_contig66899.16191.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66899 298..438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66899.16191.1

>prot_M-pyrifera_M_contig66899.16191.1 ID=prot_M-pyrifera_M_contig66899.16191.1|Name=mRNA_M-pyrifera_M_contig66899.16191.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=47bp
MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVYVRLVQIMG*
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mRNA from alignment at M-pyrifera_M_contig66899:298..438-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66899.16191.1 ID=mRNA_M-pyrifera_M_contig66899.16191.1|Name=mRNA_M-pyrifera_M_contig66899.16191.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=141bp|location=Sequence derived from alignment at M-pyrifera_M_contig66899:298..438- (Macrocystis pyrifera P11B4 male)
ATGCCAACTATTAAACAACTTATTAGAAACACAAGACAGCCAATCAGAAA
TGTCACGAAATCCCCCGCTCTGGGGGGATGTCCTCAACGACGAGGAACAT
GTACTAGGGTGTATGTGCGACTCGTTCAGATCATGGGCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66899:298..438-

>mRNA_M-pyrifera_M_contig66899.16191.1 ID=mRNA_M-pyrifera_M_contig66899.16191.1|Name=mRNA_M-pyrifera_M_contig66899.16191.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig66899:298..438- (Macrocystis pyrifera P11B4 male)
ATGCCAACTATTAAACAACTTATTAGAAACACAAGACAGCCAATCAGAAA
TGTCACGAAATCCCCCGCTCTGGGGGGATGTCCTCAACGACGAGGAACAT
GTACTAGGGTGTATGTGCGACTCGTTCAGATCATGGGCTAGATGCCAACT
ATTAAACAACTTATTAGAAACACAAGACAGCCAATCAGAAATGTCACGAA
ATCCCCCGCTCTGGGGGGATGTCCTCAACGACGAGGAACATGTACTAGGG
TGTATGTGCGACTCGTTCAGATCATGGGCTAG
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