prot_M-pyrifera_M_contig122365.4610.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig122365.4610.1
Unique Nameprot_M-pyrifera_M_contig122365.4610.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length104
Homology
BLAST of mRNA_M-pyrifera_M_contig122365.4610.1 vs. uniprot
Match: UPI000CD7C19A (DNA excision repair protein ERCC-1 isoform X3 n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=UPI000CD7C19A)

HSP 1 Score: 93.6 bits (231), Expect = 1.710e-21
Identity = 53/112 (47.32%), Postives = 71/112 (63.39%), Query Frame = 0
Query:    1 HAR-PTSFDEAFKFLTRSELYSAPSRAAASSASALDES-------TLGSFIAVAHRQRGNPVLECLRDVPWKYADVTPDFVLGEGACALFLSLRYHLLHPWSFLKRWKEVGK 104
            HAR PTSF EAF  L  SE Y  P  A++S A+    S       T  + I V+ RQRGNP+L+ + +VPW+Y ++ PD+V+G   CALFLSLRYH L+P    +R K++GK
Sbjct:   20 HARKPTSFAEAFGDLKNSEFYKKPDEASSSKATTSSTSKAVRPSGTKSNPILVSPRQRGNPLLKSILNVPWEYEEIVPDYVMGRTTCALFLSLRYHNLNPDYINERLKQLGK 131          
BLAST of mRNA_M-pyrifera_M_contig122365.4610.1 vs. uniprot
Match: A0A2J7RN28_9NEOP (DNA excision repair protein ERCC-1 n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7RN28_9NEOP)

HSP 1 Score: 93.6 bits (231), Expect = 5.460e-21
Identity = 53/112 (47.32%), Postives = 71/112 (63.39%), Query Frame = 0
Query:    1 HAR-PTSFDEAFKFLTRSELYSAPSRAAASSASALDES-------TLGSFIAVAHRQRGNPVLECLRDVPWKYADVTPDFVLGEGACALFLSLRYHLLHPWSFLKRWKEVGK 104
            HAR PTSF EAF  L  SE Y  P  A++S A+    S       T  + I V+ RQRGNP+L+ + +VPW+Y ++ PD+V+G   CALFLSLRYH L+P    +R K++GK
Sbjct:   20 HARKPTSFAEAFGDLKNSEFYKKPDEASSSKATTSSTSKAVRPSGTKSNPILVSPRQRGNPLLKSILNVPWEYEEIVPDYVMGRTTCALFLSLRYHNLNPDYINERLKQLGK 131          
BLAST of mRNA_M-pyrifera_M_contig122365.4610.1 vs. uniprot
Match: A0A7K8SFR9_9PASS (ERCC1 protein (Fragment) n=1 Tax=Rhodinocichla rosea TaxID=58203 RepID=A0A7K8SFR9_9PASS)

HSP 1 Score: 85.9 bits (211), Expect = 9.840e-19
Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 0
Query:   33 ALDESTLGSFIAVAHRQRGNPVLECLRDVPWKYADVTPDFVLGEGACALFLSLRYHLLHPWSFLKRWKEVGK 104
            AL   T  S I V+ RQRGNPVL  +R+VPW++ DV PDFVLG  +CALFLSLRYH LHP    +R + +G+
Sbjct:    1 ALKPGTKSSSIIVSPRQRGNPVLRFIRNVPWEFGDVGPDFVLGTSSCALFLSLRYHHLHPGYIHERLRALGR 72          
BLAST of mRNA_M-pyrifera_M_contig122365.4610.1 vs. uniprot
Match: A0A2G3A240_CAPAN (DNA excision repair protein ERCC-1 n=4 Tax=Capsicum TaxID=4071 RepID=A0A2G3A240_CAPAN)

HSP 1 Score: 89.0 bits (219), Expect = 1.030e-18
Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 0
Query:    4 PTSFDEAFKFLTRSELYSAP-------SR-------AAASSASALDESTLGSFIAVAHRQRGNPVLECLRDVPWKYADVTPDFVLGEGACALFLSLRYHLLHPWSFLKRWKEVGK 104
            P+SF +AFKF+  SE YS P       SR        A+ S+SA   ST  + I V++RQ+GNP+L+ +R+V W +AD+  D++LG   CAL+LSLRYHLLHP     R +E+ K
Sbjct:   44 PSSFSQAFKFVKESEFYSPPPPTSHPSSRPVNSSDVTASPSSSAPSSSTNRNAILVSNRQKGNPLLKHIRNVRWAFADIVCDYLLGPNTCALYLSLRYHLLHPDYLYFRIRELQK 158          
BLAST of mRNA_M-pyrifera_M_contig122365.4610.1 vs. uniprot
Match: A0A8C3XAJ7_9PASS (Uncharacterized protein n=1 Tax=Cyanoderma ruficeps TaxID=181631 RepID=A0A8C3XAJ7_9PASS)

HSP 1 Score: 86.7 bits (213), Expect = 1.280e-18
Identity = 40/72 (55.56%), Postives = 53/72 (73.61%), Query Frame = 0
Query:   33 ALDESTLGSFIAVAHRQRGNPVLECLRDVPWKYADVTPDFVLGEGACALFLSLRYHLLHPWSFLKRWKEVGK 104
            AL   T  S I V+ RQRGNPVL+ +R+VPW++ DV PD+VLG+ +CALFLSLRYH LHP    +R + +G+
Sbjct:  124 ALKPGTKSSSIIVSPRQRGNPVLKFIRNVPWEFGDVVPDYVLGQSSCALFLSLRYHHLHPEYIHERLRALGR 195          
BLAST of mRNA_M-pyrifera_M_contig122365.4610.1 vs. uniprot
Match: A0A5P1FAW1_ASPOF (Uncharacterized protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FAW1_ASPOF)

HSP 1 Score: 88.6 bits (218), Expect = 1.390e-18
Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = 0
Query:    6 SFDEAFKFLTRSELYSAPSRAAASSASALDESTLGSF-------IAVAHRQRGNPVLECLRDVPWKYADVTPDFVLGEGACALFLSLRYHLLHPWSFLKRWKEVGK 104
            SF EAF F+  SE Y+ P R  A S ++   S   +        I V+HRQ+GNP+L+ +R+V W +AD+  D++LG+ +CAL+LSLRYHLLHP     R +E+ K
Sbjct:   64 SFSEAFSFVKSSEFYAPPPRPVAESQASTSGSNSSNAPVHSRNAILVSHRQKGNPLLKHIRNVRWTFADIVCDYLLGQSSCALYLSLRYHLLHPDYLYFRIRELQK 169          
BLAST of mRNA_M-pyrifera_M_contig122365.4610.1 vs. uniprot
Match: A0A1D6KQM6_MAIZE (DNA excision repair protein ERCC-1 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6KQM6_MAIZE)

HSP 1 Score: 86.7 bits (213), Expect = 1.690e-18
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 0
Query:    6 SFDEAFKFLTRSELYS----------APSRAAASSASALDESTLGSFIAVAHRQRGNPVLECLRDVPWKYADVTPDFVLGEGACALFLSLRYHLLHPWSFLKRWKEVGK 104
            SF +AF FL  SE YS             R   +S SA    +  S + V+HRQRGNP+L+ +R+  W +ADV PD+VLG+ +CAL+LS+RYHLLHP     R +E+ K
Sbjct:   64 SFSQAFSFLKSSEFYSPXXXXXXXXTTTPRPTQASPSAPTPQSKNSIL-VSHRQRGNPLLKHIRNARWTFADVVPDYVLGQSSCALYLSIRYHLLHPDYLYYRIRELQK 171          
BLAST of mRNA_M-pyrifera_M_contig122365.4610.1 vs. uniprot
Match: A0A0J8E498_BETVV (HHH_2 domain-containing protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8E498_BETVV)

HSP 1 Score: 87.8 bits (216), Expect = 2.680e-18
Identity = 49/114 (42.98%), Postives = 72/114 (63.16%), Query Frame = 0
Query:    6 SFDEAFKFLTRSELYSAP-----------SRAAASSASALDESTL----GSFIAVAHRQRGNPVLECLRDVPWKYADVTPDFVLGEGACALFLSLRYHLLHPWSFLKRWKEVGK 104
            +F +AF  + +SE YS P           S + ASS+  ++ ST      + I V+HRQ+GNP+L+ +R+V W +A+V PD+VLG+ +CAL+LSLRYHLLHP     R +E+ K
Sbjct:   46 TFSQAFSSIKKSEFYSPPPSLPPSNSHSLSSSNASSSRQIEVSTTPVQKSNAILVSHRQKGNPLLKHIRNVRWNFAEVVPDYVLGQNSCALYLSLRYHLLHPDYLYYRIRELQK 159          
BLAST of mRNA_M-pyrifera_M_contig122365.4610.1 vs. uniprot
Match: UPI0011CF1CD5 (DNA excision repair protein ERCC-1 isoform X1 n=4 Tax=Strigops habroptila TaxID=2489341 RepID=UPI0011CF1CD5)

HSP 1 Score: 85.9 bits (211), Expect = 2.760e-18
Identity = 37/64 (57.81%), Postives = 50/64 (78.12%), Query Frame = 0
Query:   41 SFIAVAHRQRGNPVLECLRDVPWKYADVTPDFVLGEGACALFLSLRYHLLHPWSFLKRWKEVGK 104
            S I V+ RQRGNPVL  +R+VPW+Y D+ PD+VLG+ +CALFLSLRYH LHP    +R +++G+
Sbjct:   47 SSIVVSPRQRGNPVLRFIRNVPWEYGDIVPDYVLGQSSCALFLSLRYHHLHPDYIHQRLRDLGR 110          
BLAST of mRNA_M-pyrifera_M_contig122365.4610.1 vs. uniprot
Match: UPI000719C614 (DNA excision repair protein ERCC-1-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719C614)

HSP 1 Score: 85.5 bits (210), Expect = 3.430e-18
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 0
Query:   40 GSFIAVAHRQRGNPVLECLRDVPWKYADVTPDFVLGEGACALFLSLRYHLLHPWSFLKRWKEVGK 104
            GS + V  RQ GNPVL+C+R+VPW++AD+ PD+V+G   C LFLSLRYH LHP     R KE+G+
Sbjct:   31 GSSVLVNPRQTGNPVLKCIRNVPWEFADIIPDYVMGRTTCVLFLSLRYHQLHPDYIHVRLKELGR 95          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122365.4610.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000CD7C19A1.710e-2147.32DNA excision repair protein ERCC-1 isoform X3 n=1 ... [more]
A0A2J7RN28_9NEOP5.460e-2147.32DNA excision repair protein ERCC-1 n=1 Tax=Cryptot... [more]
A0A7K8SFR9_9PASS9.840e-1956.94ERCC1 protein (Fragment) n=1 Tax=Rhodinocichla ros... [more]
A0A2G3A240_CAPAN1.030e-1845.22DNA excision repair protein ERCC-1 n=4 Tax=Capsicu... [more]
A0A8C3XAJ7_9PASS1.280e-1855.56Uncharacterized protein n=1 Tax=Cyanoderma ruficep... [more]
A0A5P1FAW1_ASPOF1.390e-1844.34Uncharacterized protein n=1 Tax=Asparagus officina... [more]
A0A1D6KQM6_MAIZE1.690e-1844.95DNA excision repair protein ERCC-1 n=1 Tax=Zea may... [more]
A0A0J8E498_BETVV2.680e-1842.98HHH_2 domain-containing protein n=1 Tax=Beta vulga... [more]
UPI0011CF1CD52.760e-1857.81DNA excision repair protein ERCC-1 isoform X1 n=4 ... [more]
UPI000719C6143.430e-1856.92DNA excision repair protein ERCC-1-like n=1 Tax=Pr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.10130coord: 41..104
e-value: 3.0E-18
score: 67.5
NoneNo IPR availablePRODOMPD013585coord: 43..104
e-value: 2.0E-16
score: 204.0
IPR004579ERCC1/RAD10/SWI10 familyPFAMPF03834Rad10coord: 43..102
e-value: 4.3E-17
score: 62.2
IPR004579ERCC1/RAD10/SWI10 familyPANTHERPTHR12749EXCISION REPAIR CROSS-COMPLEMENTING 1 ERCC1coord: 21..104
IPR011335Restriction endonuclease type II-likeSUPERFAMILY52980Restriction endonuclease-likecoord: 42..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122365contigM-pyrifera_M_contig122365:217..528 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122365.4610.1mRNA_M-pyrifera_M_contig122365.4610.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig122365 217..528 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig122365.4610.1 ID=prot_M-pyrifera_M_contig122365.4610.1|Name=mRNA_M-pyrifera_M_contig122365.4610.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
HARPTSFDEAFKFLTRSELYSAPSRAAASSASALDESTLGSFIAVAHRQR
GNPVLECLRDVPWKYADVTPDFVLGEGACALFLSLRYHLLHPWSFLKRWK
EVGK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004579ERCC1/RAD10/SWI10
IPR011335Restrct_endonuc-II-like