mRNA_M-pyrifera_M_contig122365.4610.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122365.4610.1
Unique NamemRNA_M-pyrifera_M_contig122365.4610.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122365.4610.1 vs. uniprot
Match: UPI000CD7C19A (DNA excision repair protein ERCC-1 isoform X3 n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=UPI000CD7C19A)

HSP 1 Score: 93.6 bits (231), Expect = 1.710e-21
Identity = 53/112 (47.32%), Postives = 71/112 (63.39%), Query Frame = 1 
Query:    1 HAR-PTSFDEAFKFLTRSELYSAPSRAAASSASALDES-------TLGSFIAVAHRQRGNPVLECLRDVPWKYADVTPDFVLGEGACALFLSLRYHLLHPWSFLKRWKEVGK 312
            HAR PTSF EAF  L  SE Y  P  A++S A+    S       T  + I V+ RQRGNP+L+ + +VPW+Y ++ PD+V+G   CALFLSLRYH L+P    +R K++GK
Sbjct:   20 HARKPTSFAEAFGDLKNSEFYKKPDEASSSKATTSSTSKAVRPSGTKSNPILVSPRQRGNPLLKSILNVPWEYEEIVPDYVMGRTTCALFLSLRYHNLNPDYINERLKQLGK 131
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BLAST of mRNA_M-pyrifera_M_contig122365.4610.1 vs. uniprot
Match: A0A2J7RN28_9NEOP (DNA excision repair protein ERCC-1 n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7RN28_9NEOP)

HSP 1 Score: 93.6 bits (231), Expect = 5.460e-21
Identity = 53/112 (47.32%), Postives = 71/112 (63.39%), Query Frame = 1 
Query:    1 HAR-PTSFDEAFKFLTRSELYSAPSRAAASSASALDES-------TLGSFIAVAHRQRGNPVLECLRDVPWKYADVTPDFVLGEGACALFLSLRYHLLHPWSFLKRWKEVGK 312
            HAR PTSF EAF  L  SE Y  P  A++S A+    S       T  + I V+ RQRGNP+L+ + +VPW+Y ++ PD+V+G   CALFLSLRYH L+P    +R K++GK
Sbjct:   20 HARKPTSFAEAFGDLKNSEFYKKPDEASSSKATTSSTSKAVRPSGTKSNPILVSPRQRGNPLLKSILNVPWEYEEIVPDYVMGRTTCALFLSLRYHNLNPDYINERLKQLGK 131
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BLAST of mRNA_M-pyrifera_M_contig122365.4610.1 vs. uniprot
Match: A0A7K8SFR9_9PASS (ERCC1 protein (Fragment) n=1 Tax=Rhodinocichla rosea TaxID=58203 RepID=A0A7K8SFR9_9PASS)

HSP 1 Score: 85.9 bits (211), Expect = 9.840e-19
Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:   97 ALDESTLGSFIAVAHRQRGNPVLECLRDVPWKYADVTPDFVLGEGACALFLSLRYHLLHPWSFLKRWKEVGK 312
            AL   T  S I V+ RQRGNPVL  +R+VPW++ DV PDFVLG  +CALFLSLRYH LHP    +R + +G+
Sbjct:    1 ALKPGTKSSSIIVSPRQRGNPVLRFIRNVPWEFGDVGPDFVLGTSSCALFLSLRYHHLHPGYIHERLRALGR 72
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BLAST of mRNA_M-pyrifera_M_contig122365.4610.1 vs. uniprot
Match: A0A2G3A240_CAPAN (DNA excision repair protein ERCC-1 n=4 Tax=Capsicum TaxID=4071 RepID=A0A2G3A240_CAPAN)

HSP 1 Score: 89.0 bits (219), Expect = 1.030e-18
Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 1 
Query:   10 PTSFDEAFKFLTRSELYSAP-------SR-------AAASSASALDESTLGSFIAVAHRQRGNPVLECLRDVPWKYADVTPDFVLGEGACALFLSLRYHLLHPWSFLKRWKEVGK 312
            P+SF +AFKF+  SE YS P       SR        A+ S+SA   ST  + I V++RQ+GNP+L+ +R+V W +AD+  D++LG   CAL+LSLRYHLLHP     R +E+ K
Sbjct:   44 PSSFSQAFKFVKESEFYSPPPPTSHPSSRPVNSSDVTASPSSSAPSSSTNRNAILVSNRQKGNPLLKHIRNVRWAFADIVCDYLLGPNTCALYLSLRYHLLHPDYLYFRIRELQK 158
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BLAST of mRNA_M-pyrifera_M_contig122365.4610.1 vs. uniprot
Match: A0A8C3XAJ7_9PASS (Uncharacterized protein n=1 Tax=Cyanoderma ruficeps TaxID=181631 RepID=A0A8C3XAJ7_9PASS)

HSP 1 Score: 86.7 bits (213), Expect = 1.280e-18
Identity = 40/72 (55.56%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:   97 ALDESTLGSFIAVAHRQRGNPVLECLRDVPWKYADVTPDFVLGEGACALFLSLRYHLLHPWSFLKRWKEVGK 312
            AL   T  S I V+ RQRGNPVL+ +R+VPW++ DV PD+VLG+ +CALFLSLRYH LHP    +R + +G+
Sbjct:  124 ALKPGTKSSSIIVSPRQRGNPVLKFIRNVPWEFGDVVPDYVLGQSSCALFLSLRYHHLHPEYIHERLRALGR 195
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BLAST of mRNA_M-pyrifera_M_contig122365.4610.1 vs. uniprot
Match: A0A5P1FAW1_ASPOF (Uncharacterized protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FAW1_ASPOF)

HSP 1 Score: 88.6 bits (218), Expect = 1.390e-18
Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = 1 
Query:   16 SFDEAFKFLTRSELYSAPSRAAASSASALDESTLGSF-------IAVAHRQRGNPVLECLRDVPWKYADVTPDFVLGEGACALFLSLRYHLLHPWSFLKRWKEVGK 312
            SF EAF F+  SE Y+ P R  A S ++   S   +        I V+HRQ+GNP+L+ +R+V W +AD+  D++LG+ +CAL+LSLRYHLLHP     R +E+ K
Sbjct:   64 SFSEAFSFVKSSEFYAPPPRPVAESQASTSGSNSSNAPVHSRNAILVSHRQKGNPLLKHIRNVRWTFADIVCDYLLGQSSCALYLSLRYHLLHPDYLYFRIRELQK 169
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BLAST of mRNA_M-pyrifera_M_contig122365.4610.1 vs. uniprot
Match: A0A1D6KQM6_MAIZE (DNA excision repair protein ERCC-1 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6KQM6_MAIZE)

HSP 1 Score: 86.7 bits (213), Expect = 1.690e-18
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1 
Query:   16 SFDEAFKFLTRSELYS----------APSRAAASSASALDESTLGSFIAVAHRQRGNPVLECLRDVPWKYADVTPDFVLGEGACALFLSLRYHLLHPWSFLKRWKEVGK 312
            SF +AF FL  SE YS             R   +S SA    +  S + V+HRQRGNP+L+ +R+  W +ADV PD+VLG+ +CAL+LS+RYHLLHP     R +E+ K
Sbjct:   64 SFSQAFSFLKSSEFYSPXXXXXXXXTTTPRPTQASPSAPTPQSKNSIL-VSHRQRGNPLLKHIRNARWTFADVVPDYVLGQSSCALYLSIRYHLLHPDYLYYRIRELQK 171
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BLAST of mRNA_M-pyrifera_M_contig122365.4610.1 vs. uniprot
Match: A0A0J8E498_BETVV (HHH_2 domain-containing protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8E498_BETVV)

HSP 1 Score: 87.8 bits (216), Expect = 2.680e-18
Identity = 49/114 (42.98%), Postives = 72/114 (63.16%), Query Frame = 1 
Query:   16 SFDEAFKFLTRSELYSAP-----------SRAAASSASALDESTL----GSFIAVAHRQRGNPVLECLRDVPWKYADVTPDFVLGEGACALFLSLRYHLLHPWSFLKRWKEVGK 312
            +F +AF  + +SE YS P           S + ASS+  ++ ST      + I V+HRQ+GNP+L+ +R+V W +A+V PD+VLG+ +CAL+LSLRYHLLHP     R +E+ K
Sbjct:   46 TFSQAFSSIKKSEFYSPPPSLPPSNSHSLSSSNASSSRQIEVSTTPVQKSNAILVSHRQKGNPLLKHIRNVRWNFAEVVPDYVLGQNSCALYLSLRYHLLHPDYLYYRIRELQK 159
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BLAST of mRNA_M-pyrifera_M_contig122365.4610.1 vs. uniprot
Match: UPI0011CF1CD5 (DNA excision repair protein ERCC-1 isoform X1 n=4 Tax=Strigops habroptila TaxID=2489341 RepID=UPI0011CF1CD5)

HSP 1 Score: 85.9 bits (211), Expect = 2.760e-18
Identity = 37/64 (57.81%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:  121 SFIAVAHRQRGNPVLECLRDVPWKYADVTPDFVLGEGACALFLSLRYHLLHPWSFLKRWKEVGK 312
            S I V+ RQRGNPVL  +R+VPW+Y D+ PD+VLG+ +CALFLSLRYH LHP    +R +++G+
Sbjct:   47 SSIVVSPRQRGNPVLRFIRNVPWEYGDIVPDYVLGQSSCALFLSLRYHHLHPDYIHQRLRDLGR 110
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BLAST of mRNA_M-pyrifera_M_contig122365.4610.1 vs. uniprot
Match: UPI000719C614 (DNA excision repair protein ERCC-1-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719C614)

HSP 1 Score: 85.5 bits (210), Expect = 3.430e-18
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:  118 GSFIAVAHRQRGNPVLECLRDVPWKYADVTPDFVLGEGACALFLSLRYHLLHPWSFLKRWKEVGK 312
            GS + V  RQ GNPVL+C+R+VPW++AD+ PD+V+G   C LFLSLRYH LHP     R KE+G+
Sbjct:   31 GSSVLVNPRQTGNPVLKCIRNVPWEFADIIPDYVMGRTTCVLFLSLRYHQLHPDYIHVRLKELGR 95
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122365.4610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000CD7C19A1.710e-2147.32DNA excision repair protein ERCC-1 isoform X3 n=1 ... [more]
A0A2J7RN28_9NEOP5.460e-2147.32DNA excision repair protein ERCC-1 n=1 Tax=Cryptot... [more]
A0A7K8SFR9_9PASS9.840e-1956.94ERCC1 protein (Fragment) n=1 Tax=Rhodinocichla ros... [more]
A0A2G3A240_CAPAN1.030e-1845.22DNA excision repair protein ERCC-1 n=4 Tax=Capsicu... [more]
A0A8C3XAJ7_9PASS1.280e-1855.56Uncharacterized protein n=1 Tax=Cyanoderma ruficep... [more]
A0A5P1FAW1_ASPOF1.390e-1844.34Uncharacterized protein n=1 Tax=Asparagus officina... [more]
A0A1D6KQM6_MAIZE1.690e-1844.95DNA excision repair protein ERCC-1 n=1 Tax=Zea may... [more]
A0A0J8E498_BETVV2.680e-1842.98HHH_2 domain-containing protein n=1 Tax=Beta vulga... [more]
UPI0011CF1CD52.760e-1857.81DNA excision repair protein ERCC-1 isoform X1 n=4 ... [more]
UPI000719C6143.430e-1856.92DNA excision repair protein ERCC-1-like n=1 Tax=Pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122365contigM-pyrifera_M_contig122365:217..528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score89.7
Seed ortholog evalue8.5e-16
Seed eggNOG ortholog161934.XP_010695052.1
KEGG koko:K10849
KEGG Pathwayko01524,ko03420,ko03460,map01524,map03420,map03460
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000014,GO:0000109,GO:0000110,GO:0000710,GO:0000724,GO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006294,GO:0006296,GO:0006298,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010212,GO:0010213,GO:0010224,GO:0010332,GO:0016043,GO:0016787,GO:0016788,GO:0016888,GO:0016893,GO:0017108,GO:0022402,GO:0022414,GO:0022607,GO:0032991,GO:0033554,GO:0033683,GO:0034622,GO:0034641,GO:0034644,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048256,GO:0050896,GO:0051321,GO:0051716,GO:0061982,GO:0065003,GO:0065004,GO:0070522,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0104004,GO:0140097,GO:1901360,GO:1901363,GO:1903046,GO:1990391
EggNOG free text desc.DNA excision repair protein
EggNOG OGs37KXJ@33090,3GD14@35493,COG5241@1,KOG2841@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.52478-CDS-M-pyrifera_M_contig122365:216..5281622815743.52478-CDS-M-pyrifera_M_contig122365:216..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122365 217..528 +
1692277548.517385-CDS-M-pyrifera_M_contig122365:216..5281692277548.517385-CDS-M-pyrifera_M_contig122365:216..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122365 217..528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122365.4610.1prot_M-pyrifera_M_contig122365.4610.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122365 217..528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122365.4610.1

>prot_M-pyrifera_M_contig122365.4610.1 ID=prot_M-pyrifera_M_contig122365.4610.1|Name=mRNA_M-pyrifera_M_contig122365.4610.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
HARPTSFDEAFKFLTRSELYSAPSRAAASSASALDESTLGSFIAVAHRQR
GNPVLECLRDVPWKYADVTPDFVLGEGACALFLSLRYHLLHPWSFLKRWK
EVGK
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mRNA from alignment at M-pyrifera_M_contig122365:217..528+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122365.4610.1 ID=mRNA_M-pyrifera_M_contig122365.4610.1|Name=mRNA_M-pyrifera_M_contig122365.4610.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig122365:217..528+ (Macrocystis pyrifera P11B4 male)
CATGCGCGGCCGACGAGTTTCGACGAAGCGTTCAAGTTCTTGACACGCTC
TGAGCTGTACAGCGCACCGTCTCGAGCTGCAGCGAGCAGTGCGTCAGCAC
TGGATGAGTCTACACTTGGTAGCTTCATTGCAGTGGCGCACAGGCAGCGC
GGGAACCCGGTGCTGGAGTGCTTGCGCGATGTGCCGTGGAAGTACGCGGA
TGTGACTCCTGATTTTGTGCTTGGCGAAGGCGCATGCGCGCTCTTCCTGT
CGCTGCGATACCACCTGCTGCATCCATGGTCCTTTTTAAAGCGTTGGAAG
GAAGTGGGGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122365:217..528+

>mRNA_M-pyrifera_M_contig122365.4610.1 ID=mRNA_M-pyrifera_M_contig122365.4610.1|Name=mRNA_M-pyrifera_M_contig122365.4610.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig122365:217..528+ (Macrocystis pyrifera P11B4 male)
CATGCGCGGCCGACGAGTTTCGACGAAGCGTTCAAGTTCTTGACACGCTC
TGAGCTGTACAGCGCACCGTCTCGAGCTGCAGCGAGCAGTGCGTCAGCAC
TGGATGAGTCTACACTTGGTAGCTTCATTGCAGTGGCGCACAGGCAGCGC
GGGAACCCGGTGCTGGAGTGCTTGCGCGATGTGCCGTGGAAGTACGCGGA
TGTGACTCCTGATTTTGTGCTTGGCGAAGGCGCATGCGCGCTCTTCCTGT
CGCTGCGATACCACCTGCTGCATCCATGGTCCTTTTTAAAGCGTTGGAAG
GAAGTGGGGAAGCATGCGCGGCCGACGAGTTTCGACGAAGCGTTCAAGTT
CTTGACACGCTCTGAGCTGTACAGCGCACCGTCTCGAGCTGCAGCGAGCA
GTGCGTCAGCACTGGATGAGTCTACACTTGGTAGCTTCATTGCAGTGGCG
CACAGGCAGCGCGGGAACCCGGTGCTGGAGTGCTTGCGCGATGTGCCGTG
GAAGTACGCGGATGTGACTCCTGATTTTGTGCTTGGCGAAGGCGCATGCG
CGCTCTTCCTGTCGCTGCGATACCACCTGCTGCATCCATGGTCCTTTTTA
AAGCGTTGGAAGGAAGTGGGGAAG
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