prot_M-pyrifera_M_contig12168.4459.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig12168.4459.1
Unique Name	prot_M-pyrifera_M_contig12168.4459.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	632

Homology

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BLAST of mRNA_M-pyrifera_M_contig12168.4459.1 vs. uniprot
Match: D7FVF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVF8_ECTSI)

HSP 1 Score: 488 bits (1257), Expect = 1.620e-159
Identity = 302/559 (54.03%), Postives = 367/559 (65.65%), Query Frame = 0

Query:   23 AGLRAARIPEDLLRALGARGSGFDSGDSAYGLSLLKAVEEIAAEAQLRGRRSRGDVDSRLTATLQAILTASHLLDREDAALINTAARDALEAAAVGATAAEGVDGREGEVEGRELPGPGLTSLALFALLHVSKNPREGIPVAIDVLQEIHDRGQFAPPSLAAQLDAIVKRHGTVRQKRRATFLLARALDGFGSGADDVEAGVEKTGTKGEQGFPEEADGDAAAGGRGLGGRGRVGAAILDMVKSSPNRGRDEWDPEQAVAGESSRVLGGGG-----DXXXXXXXXXXXXXXXXXXRXLRRRMRGEDEGGASDGPCSSSYGSAGVRQVEKACSVR-----------GNGVENTHTAPPXXXXXXXXXXXXXXXXSGHPAAAGSSHREVLERVAVLAERGHAHAALAALQAVDGRKKGARVSVPFRVYGLVFRALSRGYSARGKEELELAAAPTEALQWLVRGVVRQGYAPTCAMMNFGLEAFAVAAKTRKVREGGDRARARVCTEAIDFMAGMREGGNGLHQPVSPNLVSFNIMIKVMCRLDLFDQAFEMLDVMERAGFE 565
            A  RAAR+ ++LLRALGARG G DSG   YGLSLL+ VE++A +A   G RS+GDVDSRLTATLQA+LT S  LDREDAA IN A R AL++AA    + E + GR      RE  GP L +L+L ALLHVS+N  EGIP AIDVLQE+HDRG   P +LAAQL+ + KRHGTVRQKRR++FLLARALDGFG   D+ + G +  GT  EQ      +GDA    R +G    VG AI  MV+SS  RG DEWD ++ +A       G GG     + XXXXXXX          + LR+R+R     G +         SAGVR VE++C+             G G +  H +                        A  SHR++L+RV VLAERG  HAALAALQAVDGRK+G RV+VP+RVY L+FRAL+ GYSA+G EEL LAAAP EALQWL+RG+ RQGY      +NFGLEAFAVAAKT++VREG +  RARVCTEA+DFM GMR+G NGL  PV+PN+VSFNI++KVMCRL +FDQAFE L+VM+R GFE
Sbjct:  343 AATRAARVFDELLRALGARGRGLDSGGRPYGLSLLEVVEDVAGQAHACGDRSQGDVDSRLTATLQAVLTTSRFLDREDAASINKAIRTALDSAATAIASVEDLQGRSEPELRREWAGPNLAALSLLALLHVSQNRWEGIPAAIDVLQEMHDRGLTPPATLAAQLETVFKRHGTVRQKRRSSFLLARALDGFGPPRDNNDDGDD--GTAAEQ------EGDAR---RVVG----VGEAIRGMVESSTTRGVDEWDAQEPLAAAEESANGDGGTQVNEEGXXXXXXXAVRPSAEQSYQLLRQRLREASLNGNA---------SAGVRNVEQSCAAAVAAAAELTKEAGRGPDRRHPS------------------QAPTQGASESHRDILKRVTVLAERGRPHAALAALQAVDGRKRGTRVAVPYRVYALLFRALANGYSAQGWEELGLAAAPAEALQWLLRGMARQGYPAKTTTLNFGLEAFAVAAKTKQVREGEEEVRARVCTEAMDFMEGMRDGWNGLLPPVAPNVVSFNIIVKVMCRLQMFDQAFEALEVMQRGGFE 859

[Close]

BLAST of mRNA_M-pyrifera_M_contig12168.4459.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 491 bits (1265), Expect = 1.700e-150
Identity = 336/636 (52.83%), Postives = 399/636 (62.74%), Query Frame = 0

Query:   23 AGLRAARIPEDLLRALGARGSGFDSGDSAYGLSLLKAVEEIAAEAQLRGRRSRGDVDSRLTATLQAILTASHLLDREDAALINTAARDALEAAAVGATAAEG--------VDGREGEVEGRELPGPGLTSLALFALLHVSKNPREGIPVAIDVLQEIHDRGQFAPPSLAAQLDAIVKRHGTVRQKRRATFLLARALDGFGSGADDVEAGVEKTGTKGEQGFPEEADGDAAAGGRGLGGRGRVGAAILDMVKSSPNRGRDEWDPEQAVAGESSRVLGGGGDXXXXXXXXXXXXXXXXXX------RXLRRRMRGEDEGGASDGPCSSSYGSAGVRQVEKACSVR------------GNGVENTHTAPPXXXXXXXXXXXXXXXXSGHPAAAGSSHREVLERVAVLAERGHAHAALAALQAVDGRKKGARVSVPFRVYGLVFRALSRGYSARGKEELELAAAPTEALQWLVRGVVRQGYAPTCAMMNFGLEAFAVAAKTRKVREGGDRARARVCTEAIDFMAGMREGGNGLHQPVSPNLVSFNIMIKVMCRLDLFDQAFEMLDVMERAGFEPDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGQAISFAQHAFNQ 632
            A  RAA + ++LLRALGARG G DSGD  YGLSLL+ V+++AA+A   G RS+GDVDSRLTATLQA+LT S  LDREDA  IN A R AL++AA    A  G          G E E+  RE  GP L +L+L ALLHVS+N  EGIP AIDVLQE+HDRG   P +LAAQL+ + KRHGTVRQKRR++FLLARALDGFG   D+           G  G   E +GDA          GRVG AI  MVKSS  RG  EWD ++ + G + +   GGGD                        + LR+R R     G +         S GVR VE++C+              G G++  H +                        A  SHR++L RV VLAERG  HAALAALQAVDGRK+G RVSVP+RVY L+FRAL+ GYSA+G EEL LAAAP EALQWL+RG+ RQGY+     +NFGLEAFAVAAKT++VREG +  RARVCTEA+DFM GMR+G NGL  PV+PN+VSFNI++KVMCRL +FDQAFE L+VM+  GFEPDR                      XXXXXXXXXXXXXXXXXXXXXXXXXXX VG+AISFAQHA+NQ
Sbjct: 2075 AATRAALVFDELLRALGARGRGLDSGDRLYGLSLLRVVDDVAAQAHACGERSQGDVDSRLTATLQAVLTTSRFLDREDATSINKAIRTALDSAAAAIAAEVGGRHPVEDLQGGSEPELR-REWAGPNLAALSLLALLHVSQNRWEGIPAAIDVLQEMHDRGLTPPATLAAQLETVFKRHGTVRQKRRSSFLLARALDGFGPPRDNNN-------DDGADGTAAEQEGDARR-------VGRVGGAIRGMVKSSTTRGVGEWDAQEPL-GAAEKYASGGGDTQGNDEASYSTGDSAAQPSAEQSYQLLRQRRREASLNGNA---------SVGVRNVEQSCAAAAVAAAAEVTKDAGRGLDRRHPS------------------QAPTPGASESHRDILRRVTVLAERGRPHAALAALQAVDGRKRGTRVSVPYRVYALLFRALANGYSAQGCEELGLAAAPAEALQWLLRGMARQGYSAKTTTLNFGLEAFAVAAKTKQVREGEEEVRARVCTEAMDFMEGMRDGWNGLLPPVAPNVVSFNIIVKVMCRLQMFDQAFEALEVMQSGGFEPDRFTFSTLIHGLAKAGDNNGAWEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDVGEAISFAQHAYNQ 2667

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig12168.4459.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig12168.4459.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FVF8_ECTSI	1.620e-159	54.03	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KBD4_9PHAE	1.700e-150	52.83	Integrase catalytic domain-containing protein n=1 ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 531..580 e-value: 2.4E-14 score: 53.2
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 534..567 e-value: 1.0E-7 score: 29.7 coord: 569..601 e-value: 1.7E-6 score: 25.9
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 567..601 score: 12.123
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 532..566 score: 11.849
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 396..632 e-value: 1.4E-26 score: 95.6
None	No IPR available	PANTHER	PTHR46128	FAMILY NOT NAMED	coord: 529..623

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig12168	contig	M-pyrifera_M_contig12168:270..8746 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig12168.4459.1	mRNA_M-pyrifera_M_contig12168.4459.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig12168 270..8746 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig12168.4459.1 ID=prot_M-pyrifera_M_contig12168.4459.1|Name=mRNA_M-pyrifera_M_contig12168.4459.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=632bp
AAAAGGSNASTPVTAAGDDDAAAGLRAARIPEDLLRALGARGSGFDSGDS
AYGLSLLKAVEEIAAEAQLRGRRSRGDVDSRLTATLQAILTASHLLDRED
AALINTAARDALEAAAVGATAAEGVDGREGEVEGRELPGPGLTSLALFAL
LHVSKNPREGIPVAIDVLQEIHDRGQFAPPSLAAQLDAIVKRHGTVRQKR
RATFLLARALDGFGSGADDVEAGVEKTGTKGEQGFPEEADGDAAAGGRGL
GGRGRVGAAILDMVKSSPNRGRDEWDPEQAVAGESSRVLGGGGDGGGDGG
GDGSPFSAAQSYRQLRRRMRGEDEGGASDGPCSSSYGSAGVRQVEKACSV
RGNGVENTHTAPPPPPPPPRGAGAGAASSSGHPAAAGSSHREVLERVAVL
AERGHAHAALAALQAVDGRKKGARVSVPFRVYGLVFRALSRGYSARGKEE
LELAAAPTEALQWLVRGVVRQGYAPTCAMMNFGLEAFAVAAKTRKVREGG
DRARARVCTEAIDFMAGMREGGNGLHQPVSPNLVSFNIMIKVMCRLDLFD
QAFEMLDVMERAGFEPDRVTYSTLIHALSKSGDCDGAWEVMLMMTNKGIA
PHSIAIDGIVDGFIRSGDVGQAISFAQHAFNQ

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf