mRNA_M-pyrifera_M_contig12168.4459.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12168.4459.1
Unique NamemRNA_M-pyrifera_M_contig12168.4459.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig12168.4459.1 vs. uniprot
Match: D7FVF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVF8_ECTSI)

HSP 1 Score: 488 bits (1257), Expect = 1.620e-159
Identity = 302/559 (54.03%), Postives = 367/559 (65.65%), Query Frame = 1 
Query:   67 AGLRAARIPEDLLRALGARGSGFDSGDSAYGLSLLKAVEEIAAEAQLRGRRSRGDVDSRLTATLQAILTASHLLDREDAALINTAARDALEAAAVGATAAEGVDGREGEVEGRELPGPGLTSLALFALLHVSKNPREGIPVAIDVLQEIHDRGQFAPPSLAAQLDAIVKRHGTVRQKRRATFLLARALDGFGSGADDVEAGVEKTGTKGEQGFPEEADGDAAAGGRGLGGRGRVGAAILDMVKSSPNRGRDEWDPEQAVAGESSRVLGGGG-----DXXXXXXXXXXXXXXXXXXRXLRRRMRGEDEGGASDGPCSSSYGSAGVRQVEKACSVR-----------GNGVENTHTAPPXXXXXXXXXXXXXXXXSGHPAAAGSSHREVLERVAVLAERGHAHAALAALQAVDGRKKGARVSVPFRVYGLVFRALSRGYSARGKEELELAAAPTEALQWLVRGVVRQGYAPTCAMMNFGLEAFAVAAKTRKVREGGDRARARVCTEAIDFMAGMREGGNGLHQPVSPNLVSFNIMIKVMCRLDLFDQAFEMLDVMERAGFE 1695
            A  RAAR+ ++LLRALGARG G DSG   YGLSLL+ VE++A +A   G RS+GDVDSRLTATLQA+LT S  LDREDAA IN A R AL++AA    + E + GR      RE  GP L +L+L ALLHVS+N  EGIP AIDVLQE+HDRG   P +LAAQL+ + KRHGTVRQKRR++FLLARALDGFG   D+ + G +  GT  EQ      +GDA    R +G    VG AI  MV+SS  RG DEWD ++ +A       G GG     + XXXXXXX          + LR+R+R     G +         SAGVR VE++C+             G G +  H +                        A  SHR++L+RV VLAERG  HAALAALQAVDGRK+G RV+VP+RVY L+FRAL+ GYSA+G EEL LAAAP EALQWL+RG+ RQGY      +NFGLEAFAVAAKT++VREG +  RARVCTEA+DFM GMR+G NGL  PV+PN+VSFNI++KVMCRL +FDQAFE L+VM+R GFE
Sbjct:  343 AATRAARVFDELLRALGARGRGLDSGGRPYGLSLLEVVEDVAGQAHACGDRSQGDVDSRLTATLQAVLTTSRFLDREDAASINKAIRTALDSAATAIASVEDLQGRSEPELRREWAGPNLAALSLLALLHVSQNRWEGIPAAIDVLQEMHDRGLTPPATLAAQLETVFKRHGTVRQKRRSSFLLARALDGFGPPRDNNDDGDD--GTAAEQ------EGDAR---RVVG----VGEAIRGMVESSTTRGVDEWDAQEPLAAAEESANGDGGTQVNEEGXXXXXXXAVRPSAEQSYQLLRQRLREASLNGNA---------SAGVRNVEQSCAAAVAAAAELTKEAGRGPDRRHPS------------------QAPTQGASESHRDILKRVTVLAERGRPHAALAALQAVDGRKRGTRVAVPYRVYALLFRALANGYSAQGWEELGLAAAPAEALQWLLRGMARQGYPAKTTTLNFGLEAFAVAAKTKQVREGEEEVRARVCTEAMDFMEGMRDGWNGLLPPVAPNVVSFNIIVKVMCRLQMFDQAFEALEVMQRGGFE 859
[Close]
BLAST of mRNA_M-pyrifera_M_contig12168.4459.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 491 bits (1265), Expect = 1.700e-150
Identity = 336/636 (52.83%), Postives = 399/636 (62.74%), Query Frame = 1 
Query:   67 AGLRAARIPEDLLRALGARGSGFDSGDSAYGLSLLKAVEEIAAEAQLRGRRSRGDVDSRLTATLQAILTASHLLDREDAALINTAARDALEAAAVGATAAEG--------VDGREGEVEGRELPGPGLTSLALFALLHVSKNPREGIPVAIDVLQEIHDRGQFAPPSLAAQLDAIVKRHGTVRQKRRATFLLARALDGFGSGADDVEAGVEKTGTKGEQGFPEEADGDAAAGGRGLGGRGRVGAAILDMVKSSPNRGRDEWDPEQAVAGESSRVLGGGGDXXXXXXXXXXXXXXXXXX------RXLRRRMRGEDEGGASDGPCSSSYGSAGVRQVEKACSVR------------GNGVENTHTAPPXXXXXXXXXXXXXXXXSGHPAAAGSSHREVLERVAVLAERGHAHAALAALQAVDGRKKGARVSVPFRVYGLVFRALSRGYSARGKEELELAAAPTEALQWLVRGVVRQGYAPTCAMMNFGLEAFAVAAKTRKVREGGDRARARVCTEAIDFMAGMREGGNGLHQPVSPNLVSFNIMIKVMCRLDLFDQAFEMLDVMERAGFEPDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGQAISFAQHAFNQ 1896
            A  RAA + ++LLRALGARG G DSGD  YGLSLL+ V+++AA+A   G RS+GDVDSRLTATLQA+LT S  LDREDA  IN A R AL++AA    A  G          G E E+  RE  GP L +L+L ALLHVS+N  EGIP AIDVLQE+HDRG   P +LAAQL+ + KRHGTVRQKRR++FLLARALDGFG   D+           G  G   E +GDA          GRVG AI  MVKSS  RG  EWD ++ + G + +   GGGD                        + LR+R R     G +         S GVR VE++C+              G G++  H +                        A  SHR++L RV VLAERG  HAALAALQAVDGRK+G RVSVP+RVY L+FRAL+ GYSA+G EEL LAAAP EALQWL+RG+ RQGY+     +NFGLEAFAVAAKT++VREG +  RARVCTEA+DFM GMR+G NGL  PV+PN+VSFNI++KVMCRL +FDQAFE L+VM+  GFEPDR                      XXXXXXXXXXXXXXXXXXXXXXXXXXX VG+AISFAQHA+NQ
Sbjct: 2075 AATRAALVFDELLRALGARGRGLDSGDRLYGLSLLRVVDDVAAQAHACGERSQGDVDSRLTATLQAVLTTSRFLDREDATSINKAIRTALDSAAAAIAAEVGGRHPVEDLQGGSEPELR-REWAGPNLAALSLLALLHVSQNRWEGIPAAIDVLQEMHDRGLTPPATLAAQLETVFKRHGTVRQKRRSSFLLARALDGFGPPRDNNN-------DDGADGTAAEQEGDARR-------VGRVGGAIRGMVKSSTTRGVGEWDAQEPL-GAAEKYASGGGDTQGNDEASYSTGDSAAQPSAEQSYQLLRQRRREASLNGNA---------SVGVRNVEQSCAAAAVAAAAEVTKDAGRGLDRRHPS------------------QAPTPGASESHRDILRRVTVLAERGRPHAALAALQAVDGRKRGTRVSVPYRVYALLFRALANGYSAQGCEELGLAAAPAEALQWLLRGMARQGYSAKTTTLNFGLEAFAVAAKTKQVREGEEEVRARVCTEAMDFMEGMRDGWNGLLPPVAPNVVSFNIIVKVMCRLQMFDQAFEALEVMQSGGFEPDRFTFSTLIHGLAKAGDNNGAWEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDVGEAISFAQHAYNQ 2667
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12168.4459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVF8_ECTSI1.620e-15954.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBD4_9PHAE1.700e-15052.83Integrase catalytic domain-containing protein n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12168contigM-pyrifera_M_contig12168:270..8746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-14_000950.1
Exons7
Model size1896
Cds size1896
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.119005-CDS-M-pyrifera_M_contig12168:269..4951622815736.119005-CDS-M-pyrifera_M_contig12168:269..495Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12168 270..495 +
1692277545.1617737-CDS-M-pyrifera_M_contig12168:269..4951692277545.1617737-CDS-M-pyrifera_M_contig12168:269..495Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12168 270..495 +
1622815736.1329465-CDS-M-pyrifera_M_contig12168:865..11521622815736.1329465-CDS-M-pyrifera_M_contig12168:865..1152Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12168 866..1152 +
1692277545.1731322-CDS-M-pyrifera_M_contig12168:865..11521692277545.1731322-CDS-M-pyrifera_M_contig12168:865..1152Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12168 866..1152 +
1622815736.1457617-CDS-M-pyrifera_M_contig12168:1558..25301622815736.1457617-CDS-M-pyrifera_M_contig12168:1558..2530Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12168 1559..2530 +
1692277545.1824381-CDS-M-pyrifera_M_contig12168:1558..25301692277545.1824381-CDS-M-pyrifera_M_contig12168:1558..2530Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12168 1559..2530 +
1622815736.1586614-CDS-M-pyrifera_M_contig12168:3750..38881622815736.1586614-CDS-M-pyrifera_M_contig12168:3750..3888Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12168 3751..3888 +
1692277545.1923203-CDS-M-pyrifera_M_contig12168:3750..38881692277545.1923203-CDS-M-pyrifera_M_contig12168:3750..3888Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12168 3751..3888 +
1622815736.1786718-CDS-M-pyrifera_M_contig12168:6423..64941622815736.1786718-CDS-M-pyrifera_M_contig12168:6423..6494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12168 6424..6494 +
1692277545.2015436-CDS-M-pyrifera_M_contig12168:6423..64941692277545.2015436-CDS-M-pyrifera_M_contig12168:6423..6494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12168 6424..6494 +
1622815736.1910307-CDS-M-pyrifera_M_contig12168:7700..77731622815736.1910307-CDS-M-pyrifera_M_contig12168:7700..7773Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12168 7701..7773 +
1692277545.2104263-CDS-M-pyrifera_M_contig12168:7700..77731692277545.2104263-CDS-M-pyrifera_M_contig12168:7700..7773Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12168 7701..7773 +
1622815736.2063975-CDS-M-pyrifera_M_contig12168:8617..87461622815736.2063975-CDS-M-pyrifera_M_contig12168:8617..8746Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12168 8618..8746 +
1692277545.218684-CDS-M-pyrifera_M_contig12168:8617..87461692277545.218684-CDS-M-pyrifera_M_contig12168:8617..8746Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12168 8618..8746 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12168.4459.1prot_M-pyrifera_M_contig12168.4459.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12168 270..8746 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12168.4459.1

>prot_M-pyrifera_M_contig12168.4459.1 ID=prot_M-pyrifera_M_contig12168.4459.1|Name=mRNA_M-pyrifera_M_contig12168.4459.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=632bp
AAAAGGSNASTPVTAAGDDDAAAGLRAARIPEDLLRALGARGSGFDSGDS
AYGLSLLKAVEEIAAEAQLRGRRSRGDVDSRLTATLQAILTASHLLDRED
AALINTAARDALEAAAVGATAAEGVDGREGEVEGRELPGPGLTSLALFAL
LHVSKNPREGIPVAIDVLQEIHDRGQFAPPSLAAQLDAIVKRHGTVRQKR
RATFLLARALDGFGSGADDVEAGVEKTGTKGEQGFPEEADGDAAAGGRGL
GGRGRVGAAILDMVKSSPNRGRDEWDPEQAVAGESSRVLGGGGDGGGDGG
GDGSPFSAAQSYRQLRRRMRGEDEGGASDGPCSSSYGSAGVRQVEKACSV
RGNGVENTHTAPPPPPPPPRGAGAGAASSSGHPAAAGSSHREVLERVAVL
AERGHAHAALAALQAVDGRKKGARVSVPFRVYGLVFRALSRGYSARGKEE
LELAAAPTEALQWLVRGVVRQGYAPTCAMMNFGLEAFAVAAKTRKVREGG
DRARARVCTEAIDFMAGMREGGNGLHQPVSPNLVSFNIMIKVMCRLDLFD
QAFEMLDVMERAGFEPDRVTYSTLIHALSKSGDCDGAWEVMLMMTNKGIA
PHSIAIDGIVDGFIRSGDVGQAISFAQHAFNQ
back to top

mRNA from alignment at M-pyrifera_M_contig12168:270..8746+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12168.4459.1 ID=mRNA_M-pyrifera_M_contig12168.4459.1|Name=mRNA_M-pyrifera_M_contig12168.4459.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=8477bp|location=Sequence derived from alignment at M-pyrifera_M_contig12168:270..8746+ (Macrocystis pyrifera P11B4 male)
GCGGCGGCGGCAGGCGGGAGTAACGCCTCCACACCCGTCACCGCCGCTGG
CGACGATGACGCCGCCGCGGGGCTTCGAGCGGCGCGCATTCCCGAGGACC
TACTGAGGGCGCTCGGGGCGCGGGGGAGCGGCTTTGACTCGGGGGACTCC
GCGTACGGATTATCGCTGCTGAAAGCTGTGGAAGAGATTGCGGCCGAGGC
TCAGCTTCGAGGACGACGTAGTCGTGGTGTGTGTGTGAGGGGTGGGAAAG
GAAGGGCTGGGGGGCACGAGGAGGCGGCGGGGAGGAGAAGGGTGGGAAGA
GGGGAGCAGTGGCAGTGGCAGGGGCAGTGTTGCATCGCGCGTTCGTGTTT
TTTTTTCCAAGTTCAGTTCACACTTATTGCCTCCGTCCGAACGTGGCGTT
GCAGTAGGGAGAGTAAAGCGGGGGGGGGGGCTCTTTCCCCCACCTCCCCC
CCGAGTGGGGTCCCCTGGACGCAGAGACACGACGGTCTCCTCTCGTTTTT
GGTCCCCTTCTCGCCTGGTGGCGACTCATGTTACGCATGTTATCCCCTCT
TCGGCCGCTGCCGCTGCGCCCCCCCTCGCCGCCGCCCCGGCTGCAGGTGA
CGTAGACTCGAGACTCACGGCCACGCTGCAAGCTATACTCACAGCGTCCC
ACCTTCTCGACCGAGAAGATGCCGCCCTTATCAACACGGCCGCTCGCGAT
GCGTTGGAGGCCGCAGCTGTCGGGGCGACCGCTGCGGAGGGGGTGGACGG
GCGAGAAGGGGAGGTGGAGGGGAGGGAGTTGCCGGGACCAGGCCTGACGT
CGCTCGCGCTGTTTGCGCTCCTGCACGTGTCGAAGAATCCGCGGGAAGGG
ATCCCGGTGGCCATCGACGTGCTGCAAGAGATTGTGAGGATTTCCTCCTC
CGGGCTGGTTCTGCTTGAGGGCGGGTTTGTGCACTAGATTGGATGGTTGA
TTCGCTGATTCACTGATTCATTGAGCCATATGGTTAGTTTGTGGATTCAT
TCATGAATCGATGTGTCGCTTGTTCTTTGAAGTCTTCATCGAGCGATCCA
TTTTTGAATTCATTCATTTGTTTTTTCACTCATAAAAAAACATCAGACCT
GGTATGTAGATATGCACGCATATACTCGTACATCCATCCATCCATCCATT
ACTGCACCCGTACGCCTATCTATGTACAAGTATCACTTCACCGATCCATC
CATCCTCATTCTGCCCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCC
CCCTCCTCCTCCTTTCCCTCCTCCTGAACCCCCCCCAAGCACGACCGCGG
GCAATTCGCGCCCCCGTCCCTCGCAGCCCAGCTGGACGCAATCGTCAAGC
GCCACGGCACGGTCCGTCAGAAGCGCCGGGCAACCTTCCTCCTCGCTCGA
GCTCTAGACGGCTTCGGCTCCGGCGCAGATGACGTCGAAGCCGGAGTAGA
AAAAACCGGAACAAAAGGCGAACAGGGGTTTCCAGAAGAGGCCGATGGCG
ATGCAGCAGCGGGAGGAAGAGGGTTGGGGGGAAGGGGGCGCGTCGGGGCC
GCGATTCTCGATATGGTGAAGAGTTCACCCAATCGCGGGCGGGACGAGTG
GGACCCCGAGCAGGCTGTTGCTGGCGAGAGTTCCAGGGTGCTCGGCGGTG
GTGGCGATGGGGGCGGTGACGGTGGCGGTGATGGGAGCCCGTTCTCCGCT
GCACAAAGCTACCGGCAGCTGCGGCGGCGGATGCGAGGAGAAGATGAGGG
CGGTGCGTCCGACGGGCCGTGCTCCTCCTCCTACGGTTCGGCCGGAGTTC
GCCAAGTCGAAAAGGCGTGTTCGGTGCGGGGAAACGGGGTTGAAAATACT
CATACTGCTCCTCCTCCTCCTCCTCCTCCTCCTCGTGGCGCTGGTGCTGG
TGCTGCTTCTAGTTCTGGTCACCCCGCTGCCGCCGGCTCTTCTCACCGGG
AGGTACTGGAGCGCGTGGCCGTCCTGGCGGAGCGGGGGCACGCCCACGCG
GCCCTCGCGGCTCTACAGGCGGTGGACGGCAGGAAGAAGGGTGCCAGGGT
AAGCGTGCCGTTCAGGGTGTACGGATTGGTGTTCCGGGCGCTGTCGAGGG
GGTATTCGGCGCGGGGGAAGGAGGAACTTGAGCTGGCGGCGGCGCCGACA
GAGGCGCTGCAGTGGCTAGTGAGGGGCGTGGTGCGGCAAGGGTATGCGCC
GACTTGCGCGATGATGAACTTCGGCTTGGAGGCGTTTGCGGTCGCCGCCA
AGACTAGGAAGGTACGGTACGCGGTGTGCGAGGCCATTGTACGTGTGCAC
TACGTAAGCGTATCCTGGACGTACAGCAGTTTTTTTTTTTTTCTGGTAGT
ATTAATAGCAGCGCGGTTTTAGTCGACGTTGCACCCATAACTAGGAAAGG
TGCTATACGTAGGCGTGTACCATTTGTAGTCATTTTCTTTTATCAATTCC
TGCGTATGGTAACACCATGCCTGTATCATTGCCAGAGACTATCGCCGCGT
TGCTCGCGCGCTCAGAGCCCGGTGGTTATCGTTGGCGTAAGACTCTCTGC
ACCAAGTATGCACTACTCGTCGATGAATTGTTTATTTTAGAGCTCCTCGA
TTTTAGTCAGTGCTGCCGCCAAACCTATGAAGGTGCTATGGGTGGGCGTA
CACTGTGTGGGTGTAAGTACCCTATAACACATGGGTCATAAGAAAACACT
CTCTCTGGGGCGAATTTCCGAGCCGTTTTTTTTTCGAAATAGGGGTGGGG
GGGGGGGGGTTGTACTCGATATCATGCATGGCCGTATTCGTATGGCCATA
GACCCTCGCATCCCTTCGTGCAATGCCGGGACGGAGCACGTCGAATTCTC
ACCGACAAGGTAGACATTGCTCGCTTGCACCCAGCGCGAAGCGCCGTGAG
GTGTTGGGCGAGTCGCATGAAGGGTGGGCTGCATCCTATTAATACTATTA
CGGGGGTCCATAGTTAACAGGACCTATGGTGTACATAAAAACCTATATAG
TTGCCTATTTTTACTAAAACAAATTGGTCCCGTTAACTATGGACCCCCGT
AATAAGAAGCGCTTGTGAGACAGACTTTGTTGCATGTGGATGATCCTAAC
CTGCCCTTTTGAGGTGCTGTGCAGGATCTATCTAGTCTAGTACAGATCCA
ACCCAGGAAACATGCGCTATCATAGATGACGCAGATTGCACGAGTCCCAC
CCGTCAACATGAGCTAGATCATACAGGATCCGAAATAGATCTATCTGGAT
TGAAACGTATAGATCATGATGTAGGAATGATCTAGATGAAAGATCTGCCT
CCGCGGTTTGAGGTCAACGTTTGCAGTACCGTCCGCCTGAACCCTGCCCC
TGTATTGCAGGAATAAAAATAATCGCGCCGCCCTCCCCTCCTCCTCCCCT
CCTACTCACTCTTGCTCTCTCTCTCTTCTACATATACACGCGATTGGCGT
GGGTGTCCGCCCTCCATGCTGTCGCGGTTAGGTCCGGGAGGGCGGAGACA
GAGCGCGAGCGCGGGTTTGCACGGAGGCCATCGATTTCATGGCGGGAATG
CGGGAAGGGGGGAACGGTTTGCACCAACCCGTGTCGCCGAACCTAGTTTC
CTTCAACATCATGATCAAGGTGAAGAGTCAAAAGGCTGGGTCACGGTTGG
AGGCGTACTACGATAGGGGATAGGGGTAGCATTGTCGGCCCCAATATTTT
CACGGCTTGCGTGACGCAGCTCCTTGATTTATGTGAGGAGCTAGTACCGT
ATGCTGTTGGAATACAGCTACGTTGTACTCTTAGGGGGAACCATAGTAAA
TAAGACCTACGGTACACACTAAAACTATATAATTCCCTGTTTAAAAAAAA
CAATATGTGATCCTATTTACTATGGTCCCCCGTATTAGTAGTGTTTTACG
TGAATATAGTGTGATGCATTTATTAACAGCCGGGCCTCGGAATTGTCTAT
GGGATTTTAAGTATTCACATTTTTCTCAAAATCAGTTCCTGGGTGAGATT
TATTACGGGGGACATATCAATCAATTAGTACCAATTTTGATTATAAAAAA
AAAAACACTCGAAATGTATACGTGGTAGGTTTTTGTGTATACGACAGGTC
CTGATCAGTGTTAATGTGGTCCTCCCTAACGGTAGAGCCCCGCATATATA
TATACTAGACGGTGTTCTTTTCTTTTCTGTATCGCAAATCCTTCCCAGCC
TCCGGTCTTTTCCCAATTCATTTCATTAATTATGTTTTCTCGGGAGGCAA
GACAAAACAAGAGCAGCAGCAGGCGCTACTGCTGTGGTCAATGCGCCAGT
ACGACAATAGTTGTGTACAGTGCACAGCGGCAGTTGCTGCTTGCAGCAGT
TGCGCCCTGTGACTGGTGATACTACTGTAGAGAGCACAGACCCTTGTTCC
TGTACAGTAAAGTGACTCAGTGACTCAGGCTGTACGTACAAATTCCCGAG
TTCGAGCAGACGGTTCTTTCGTCCTGGAAATATTAATAGAGTTGATCATA
CATTTTCTGTGTTGGGGCATGACGAAACACTGTATGTAGCTCCTCAAGCA
AGCAATCTCGGAAACAAGTGCAGTACTGGTAGGTGTAACCCCGCCGTAGC
ACAGCAGGAGTCGTTGGCTCTTTCAAGCGGTAGCCGAACGGTCAGACTGC
TTGTCACTTCTCTTTCTGCTTGTTTGTTTTCTGAAATCGAAACTTCGGGG
GGGGGGGAGGGGGTGGGCCGGTCCCAAGTTTGTACCGCACGTACCCCTGC
TGCGTGAAACCGTCGGGTTTTTTTTCGGCTGTTTGCATGAAAAGCGCAAG
GGAGTGAGTTAGGGGGCAAAATTCGACCAAAATCGTTTTTTTGCACGCAG
TGTGTAAAAAAGCTGTTTTCCAAGTACTCACGCGCCCCGAGGTAGCCGCA
GCAGCATAGCAGCAGCAATAAACGGCAGCAGCAGCTTGGTCTGCCGTTGC
AAAGGGAGGGAGCGACGGGTTAAATTGGCCCACGACACATGCTTATTACA
GTATGTGGAAGCGTGGTGAGCTTGAAGTATTTTAGGACATCATCAGTCCC
GTTTGTGGGGCTAAGTGCTTAAAAATTGAGTGAATCGTCCCGAAAGGGGA
ACGCGGTTTGCCCTCTACAGTCTAATCTAAGGGTGTCACAAAGTTATAAA
TAAATACCGGGGGAACAGAGTAAGTCAGGACCAAAAATGCTTCGTAAAAA
TACTGGAATTTAAAGGTTTTTGTGTGCGTGGTGGGTGCTGATTACTGTGG
TCTCCCTTATAGCCCATAACCCATTTAGGACTGCAGTCCCGTTTTGGGGG
CAAGCTACTTGGAATTAGAGTGGTTTGTGCCCAAAAGGGGGCCACAGTCC
TAACAGTCCTACCAGTCCTGACTATTGCGAGGGTCCATAGTTAATAGGAC
CTATGGTATTCATGAATAAACTATATATTTACCTCTTTTTACGTACACTA
TGTGGTCCTAATTACTGTGGTCCCCCGTAATAAGTAACGATCCTAAAAAA
AAGGGTCAACCCGCTCAGAACTCTCCGCACGTTTGCGGGCCCCCAAGCTA
CTTGGAGTTAAGGTGGACTCTTTTTTTTGCAGAGTGTTTTTTTTGCGGGA
GGTTAAAATACACCACTCTCGTCACCTTTTAGACCTTAACACTCTATCAA
TAGTACGAAGACCAAGCGGTCCTTGTATTTACGCCGAGAGTGCTCAATAC
AACAATGAAAGGCGCTTGCCAGCAGAGCGGTTTTTTTTTTGCGCCCTTGT
CGTTTGCTCGCCGTGGTTCTTTCTCCGCGGTGTTGGTGTGGTCATTTGGT
GCGCGTCCCTTTAAGTCTAGACTTTCTTCATTCATGTTTTGTGTTTTTTT
CTTGTTTTGTCGTTTTTCGTGCGCGATTCGGCCGTCTCGTGGTGTTGCGC
TTCCCCTCCTTTTATTTTCGCGTGTTTATTGAGTTTTGCGTAAGTTTCCT
GCTTGTTTGGCTCACCCCGTCGCGTCCCCTCCCCCCCCCCCATTCATCCT
TGCTAACCGCGCTATTTGTTCACTGTTTTCTGCCGTACGTATGTTTACTG
TAGTTTCTCGTGTTGACGGGTTTTGCTTGGTTGTTGTCGCCGCCGTCCCT
ACCCCCGCCGCCGCCACCGCCCCCGCTGCCACCTCGTCCTTCTCTTGAGG
TCAGGTAATGTGCCGCCTGGACTTGTTTGACCAAGCCTTCGAGATGCTCG
ATGTGATGGAGCGCGCTGGATTCGAGTGAGTTGCTACATCCCCATGATTT
TTTACAGCTGTATATGCAGCCACCACAACTTCGCTCGAGCAATCTGGCCG
TTCGCTTCGAAGGATATACACAGAAATCACGGCGGGTAGATGTATCACTT
TTTGCTGCATGGGTATTGACAGGTCGAGGTTGTCTCGATGGTGGGAGAAG
CGCGGTACGTAGCTGCTTGATTTTACCGTAAGTCAGGTACAACGGCCGCT
GCCTCTTTTTTTCGGTAGGGGTGATTTTTTTTTCGTTTTTTTTCCGTTTT
GTTTTGTCTTGGCGTCACCAGTTGTGCCGCGCCTAACGCAGCCGTTACGT
CCACAGCCCCCCCACCCCCCCTCCCTGCCTTTCTGCCCCTCCCCCCACCC
CTTAGAACGTCCGCCTCACAAGCGGTTCTTAGTAGGATGCAACTCACCTT
TTATGCGACTCGCCGGACACCGCGCTCGTTGCAGTCAATGTCCCACTTTC
GTTTTTGGGGGTGCAGTTCATGTGCTGGAACCCTATTTCCCTGTTTTGTA
TGGAGGCGTTCTATGGGAGGGATAGCAACCCAATTTTTTTCAGAGGCCCC
TCGCGTGAGGCGCGTTATACTATGAGTAAGTCGCCCAAAACCTATCTGCG
AGGAAGAGAGTCGAAGAGGAAAACCCGATGAACGGTTCCATGGCCTTACT
GCAGTAATTTTGGAGCCAAACCGGGGACAAACGAAGGGCATCCCCTAAAT
GGGAGAACGCCTGCTGAAAGTACGGATAAAGTACCTCATGCGCACTTGCT
TCATCCGCGACGTGGCGGCATGAGAAAGTAGGTTACGGTTGGGAAAAACA
GAGCCTACCTACCAACCATGTTTCACGCGTAATAATCGAAAAATATTTTC
AAGTCAAAAACGATGTTGGGTAGGTAGTTTTTTTTCATCGGCTAAGGAGC
CCACCAACTCTTTTTGCTAGTGTCCGAAGTTTCGATAACATCGTAACTTT
TGATGTTACATCGTATCGAACGTTTTTAGTTGCCCTCCATCCCCTGACAT
TTCCCGTGTTTTTCCGATGTGCCAAATGTCGAAATCGTATCGAGTACGAG
AAGATATTTTGTTTATCGGTATCGTTCGGTGTCCAACTCTACTGTCTACC
TTATGTGACGTGCCCTATCCCCCCCTCGCTGTCCCTTTCCCGGTGTGTTA
CGTCGGGTTTGCTGTTGTACGTTGGCGTTAGGCCCGATCGAGTCACCTAC
AGCACTCTCATACACGCCCTGTCGAAGTCGGGGGACTGCGATGGTGCTTG
GGAGGTGCGGAACTGGGAGTTGACGATAGGCAGTGCCATTTTAAGGGGGG
GGGGGGTGGAGGGACTGATGTCGCGCCCCTATCTTCGGTGGTGCTTGCCG
CTTGGCCCAGCTTCAACGAAACGGTTGATATATAGGGATGTAGTGCACAC
GAATGCCTAGATACCTATTACAACTCCATTCCGATAGCTTTCCCATGCGG
TCGGAGCTGGGCTATGGCTAGAATTTATGGTCAATACTATTTCAATCATT
TTGATTTAGCTCAGCCCCGTCGTACACGCGGCTTTTCCCTACATTGCTTG
GAAGAGTTGTAGTTCAGACCCTGCTTAATACCAGCTATGTAACCGTGCTT
CATGTCTATTAATTCGTGTTGTACCACTTAGTCGTACGTCTACAAAACGT
TAACCCGGGTGCGTCTGTTGCCGAGTTGGCTATCTGGTGCATGCGATCGG
CTGTTGTTGGTCTTGCGTCTGCTGTGGGTTGTCTGGTTGCGTTGGTGGTG
GTGGTGGTTTTGGGGTTCGTGGTGGTGCTGTGTCTGTTGTATGTTGTGGA
GGTAGTGCTGCTGTTGTTGGCGCGGTTGCCCCGGTTGCGGCCTTGCTTAT
TATGCTCCTGTCGTTGTTGTTTGTTTAGGATGTGGTGTTGGTGTTGGTGT
TGGCGGTGATGGTGATGATGGAGCAATGTATTCATCTATGGTTGTTGTGG
ACCTTCTTATTACTGTGCAGAAATTCACGCATGTGCTTCCCAGGGGCAGT
GGTATCGCGTTCAGCTCAAGGCGTGATATTCAGACCTTGACGCTTCTACT
CTCTCTCTCGCCCCACCCCCTCCTTCGTGTCGGCAATGACGTGCGCAGGT
GATGCTGATGATGACCAACAAGGGTATCGCGCCTCACTCGATAGCGATCG
ACGGCATCGTTGACGGCTTCATTCGGAGTGGCGATGTGGGGCAGGCCATC
TCCTTCGCACAGCACGCCTTCAACCAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig12168:270..8746+

>mRNA_M-pyrifera_M_contig12168.4459.1 ID=mRNA_M-pyrifera_M_contig12168.4459.1|Name=mRNA_M-pyrifera_M_contig12168.4459.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3792bp|location=Sequence derived from alignment at M-pyrifera_M_contig12168:270..8746+ (Macrocystis pyrifera P11B4 male)
GCGGCGGCGGCAGGCGGGAGTAACGCCTCCACACCCGTCACCGCCGCTGG
CGACGATGACGCCGCCGCGGGGCTTCGAGCGGCGCGCATTCCCGAGGACC
TACTGAGGGCGCTCGGGGCGCGGGGGAGCGGCTTTGACTCGGGGGACTCC
GCGTACGGATTATCGCTGCTGAAAGCTGTGGAAGAGATTGCGGCCGAGGC
TCAGCTTCGAGGACGACGTAGTCGTGGCGGCGGCGGCAGGCGGGAGTAAC
GCCTCCACACCCGTCACCGCCGCTGGCGACGATGACGCCGCCGCGGGGCT
TCGAGCGGCGCGCATTCCCGAGGACCTACTGAGGGCGCTCGGGGCGCGGG
GGAGCGGCTTTGACTCGGGGGACTCCGCGTACGGATTATCGCTGCTGAAA
GCTGTGGAAGAGATTGCGGCCGAGGCTCAGCTTCGAGGACGACGTAGTCG
TGGTGACGTAGACTCGAGACTCACGGCCACGCTGCAAGCTATACTCACAG
CGTCCCACCTTCTCGACCGAGAAGATGCCGCCCTTATCAACACGGCCGCT
CGCGATGCGTTGGAGGCCGCAGCTGTCGGGGCGACCGCTGCGGAGGGGGT
GGACGGGCGAGAAGGGGAGGTGGAGGGGAGGGAGTTGCCGGGACCAGGCC
TGACGTCGCTCGCGCTGTTTGCGCTCCTGCACGTGTCGAAGAATCCGCGG
GAAGGGATCCCGGTGGCCATCGACGTGCTGCAAGAGATTGTGACGTAGAC
TCGAGACTCACGGCCACGCTGCAAGCTATACTCACAGCGTCCCACCTTCT
CGACCGAGAAGATGCCGCCCTTATCAACACGGCCGCTCGCGATGCGTTGG
AGGCCGCAGCTGTCGGGGCGACCGCTGCGGAGGGGGTGGACGGGCGAGAA
GGGGAGGTGGAGGGGAGGGAGTTGCCGGGACCAGGCCTGACGTCGCTCGC
GCTGTTTGCGCTCCTGCACGTGTCGAAGAATCCGCGGGAAGGGATCCCGG
TGGCCATCGACGTGCTGCAAGAGATTCACGACCGCGGGCAATTCGCGCCC
CCGTCCCTCGCAGCCCAGCTGGACGCAATCGTCAAGCGCCACGGCACGGT
CCGTCAGAAGCGCCGGGCAACCTTCCTCCTCGCTCGAGCTCTAGACGGCT
TCGGCTCCGGCGCAGATGACGTCGAAGCCGGAGTAGAAAAAACCGGAACA
AAAGGCGAACAGGGGTTTCCAGAAGAGGCCGATGGCGATGCAGCAGCGGG
AGGAAGAGGGTTGGGGGGAAGGGGGCGCGTCGGGGCCGCGATTCTCGATA
TGGTGAAGAGTTCACCCAATCGCGGGCGGGACGAGTGGGACCCCGAGCAG
GCTGTTGCTGGCGAGAGTTCCAGGGTGCTCGGCGGTGGTGGCGATGGGGG
CGGTGACGGTGGCGGTGATGGGAGCCCGTTCTCCGCTGCACAAAGCTACC
GGCAGCTGCGGCGGCGGATGCGAGGAGAAGATGAGGGCGGTGCGTCCGAC
GGGCCGTGCTCCTCCTCCTACGGTTCGGCCGGAGTTCGCCAAGTCGAAAA
GGCGTGTTCGGTGCGGGGAAACGGGGTTGAAAATACTCATACTGCTCCTC
CTCCTCCTCCTCCTCCTCCTCGTGGCGCTGGTGCTGGTGCTGCTTCTAGT
TCTGGTCACCCCGCTGCCGCCGGCTCTTCTCACCGGGAGGTACTGGAGCG
CGTGGCCGTCCTGGCGGAGCGGGGGCACGCCCACGCGGCCCTCGCGGCTC
TACAGGCGGTGGACGGCAGGAAGAAGGGTGCCAGGGTAAGCGTGCCGTTC
AGGGTGTACGGATTGGTGTTCCGGGCGCTGTCGAGGGGGTATTCGGCGCG
GGGGAAGGAGGAACTTGAGCTGGCGGCGGCGCCGACAGAGGCGCTGCAGT
GGCTAGTGAGGGGCGTGGTGCGGCAAGGGTATGCGCCGACTTGCGCGATG
ATGAACTTCGGCTTGGAGGCGTTTGCGGTCGCCGCCAAGACTAGGAAGCA
CGACCGCGGGCAATTCGCGCCCCCGTCCCTCGCAGCCCAGCTGGACGCAA
TCGTCAAGCGCCACGGCACGGTCCGTCAGAAGCGCCGGGCAACCTTCCTC
CTCGCTCGAGCTCTAGACGGCTTCGGCTCCGGCGCAGATGACGTCGAAGC
CGGAGTAGAAAAAACCGGAACAAAAGGCGAACAGGGGTTTCCAGAAGAGG
CCGATGGCGATGCAGCAGCGGGAGGAAGAGGGTTGGGGGGAAGGGGGCGC
GTCGGGGCCGCGATTCTCGATATGGTGAAGAGTTCACCCAATCGCGGGCG
GGACGAGTGGGACCCCGAGCAGGCTGTTGCTGGCGAGAGTTCCAGGGTGC
TCGGCGGTGGTGGCGATGGGGGCGGTGACGGTGGCGGTGATGGGAGCCCG
TTCTCCGCTGCACAAAGCTACCGGCAGCTGCGGCGGCGGATGCGAGGAGA
AGATGAGGGCGGTGCGTCCGACGGGCCGTGCTCCTCCTCCTACGGTTCGG
CCGGAGTTCGCCAAGTCGAAAAGGCGTGTTCGGTGCGGGGAAACGGGGTT
GAAAATACTCATACTGCTCCTCCTCCTCCTCCTCCTCCTCCTCGTGGCGC
TGGTGCTGGTGCTGCTTCTAGTTCTGGTCACCCCGCTGCCGCCGGCTCTT
CTCACCGGGAGGTACTGGAGCGCGTGGCCGTCCTGGCGGAGCGGGGGCAC
GCCCACGCGGCCCTCGCGGCTCTACAGGCGGTGGACGGCAGGAAGAAGGG
TGCCAGGGTAAGCGTGCCGTTCAGGGTGTACGGATTGGTGTTCCGGGCGC
TGTCGAGGGGGTATTCGGCGCGGGGGAAGGAGGAACTTGAGCTGGCGGCG
GCGCCGACAGAGGCGCTGCAGTGGCTAGTGAGGGGCGTGGTGCGGCAAGG
GTATGCGCCGACTTGCGCGATGATGAACTTCGGCTTGGAGGCGTTTGCGG
TCGCCGCCAAGACTAGGAAGGTCCGGGAGGGCGGAGACAGAGCGCGAGCG
CGGGTTTGCACGGAGGCCATCGATTTCATGGCGGGAATGCGGGAAGGGGG
GAACGGTTTGCACCAACCCGTGTCGCCGAACCTAGTTTCCTTCAACATCA
TGATCAAGGTCCGGGAGGGCGGAGACAGAGCGCGAGCGCGGGTTTGCACG
GAGGCCATCGATTTCATGGCGGGAATGCGGGAAGGGGGGAACGGTTTGCA
CCAACCCGTGTCGCCGAACCTAGTTTCCTTCAACATCATGATCAAGGTAA
TGTGCCGCCTGGACTTGTTTGACCAAGCCTTCGAGATGCTCGATGTGATG
GAGCGCGCTGGATTCGAGTAATGTGCCGCCTGGACTTGTTTGACCAAGCC
TTCGAGATGCTCGATGTGATGGAGCGCGCTGGATTCGAGCCCGATCGAGT
CACCTACAGCACTCTCATACACGCCCTGTCGAAGTCGGGGGACTGCGATG
GTGCTTGGGAGGCCCGATCGAGTCACCTACAGCACTCTCATACACGCCCT
GTCGAAGTCGGGGGACTGCGATGGTGCTTGGGAGGTGATGCTGATGATGA
CCAACAAGGGTATCGCGCCTCACTCGATAGCGATCGACGGCATCGTTGAC
GGCTTCATTCGGAGTGGCGATGTGGGGCAGGCCATCTCCTTCGCACAGCA
CGCCTTCAACCAGGTGATGCTGATGATGACCAACAAGGGTATCGCGCCTC
ACTCGATAGCGATCGACGGCATCGTTGACGGCTTCATTCGGAGTGGCGAT
GTGGGGCAGGCCATCTCCTTCGCACAGCACGCCTTCAACCAG
back to top