prot_M-pyrifera_M_contig120759.4274.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig120759.4274.1
Unique Nameprot_M-pyrifera_M_contig120759.4274.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length103
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: A0A1S3GRL6_DIPOR (exosome complex component RRP46 n=2 Tax=Heteromyidae TaxID=10015 RepID=A0A1S3GRL6_DIPOR)

HSP 1 Score: 70.1 bits (170), Expect = 2.050e-12
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 0 
Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 103
            G  GV ++ +E + R   E AVL AL+PR ++TVV+Q +S AG+LL+  LNA  +ALVDAGVP++AL C  T AL   G  T+D             TFA ++
Sbjct:   79 GLPGVAEKSRERMIRNTCEAAVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMKALFCGITCALDSDGTITLDPTDKQEKEARAVLTFALDS 181
[Close]
BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: A0A8I6AB24_RAT (Exosome component 5 n=1 Tax=Rattus norvegicus TaxID=10116 RepID=A0A8I6AB24_RAT)

HSP 1 Score: 69.7 bits (169), Expect = 2.480e-12
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 0 
Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 103
            G  GV ++ +E + R   E  VL AL+PR ++TVV+Q +S  G+LL+  LNA  +ALVDAGVP+RAL C  T AL P G+  +D             TFA ++
Sbjct:   69 GLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACCLNAACMALVDAGVPMRALFCGVTCALDPDGNLVLDPTTKQEKEARAILTFALDS 171
[Close]
BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: UPI00186B159C (exosome complex component RRP46 isoform X2 n=1 Tax=Trichosurus vulpecula TaxID=9337 RepID=UPI00186B159C)

HSP 1 Score: 68.9 bits (167), Expect = 3.150e-12
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = 0 
Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 103
            G  GV ++ +E + R   E  VL  L+PR ++T+V+Q +S AG+LL+  LNA  LALVDAGVP+RAL C  T AL P G   +D             TFA ++
Sbjct:   42 GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITIVLQIVSDAGSLLACCLNAACLALVDAGVPMRALFCGVTCALDPDGGLVLDPTAKQEKEARAILTFALDS 144
[Close]
BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: A0A8I6GHQ8_RAT (Exosome component 5 n=1 Tax=Rattus norvegicus TaxID=10116 RepID=A0A8I6GHQ8_RAT)

HSP 1 Score: 69.7 bits (169), Expect = 4.660e-12
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 0 
Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 103
            G  GV ++ +E + R   E  VL AL+PR ++TVV+Q +S  G+LL+  LNA  +ALVDAGVP+RAL C  T AL P G+  +D             TFA ++
Sbjct:  120 GLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACCLNAACMALVDAGVPMRALFCGVTCALDPDGNLVLDPTTKQEKEARAILTFALDS 222
[Close]
BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: G3TBW9_LOXAF (Exosome component 5 n=2 Tax=Afrotheria TaxID=311790 RepID=G3TBW9_LOXAF)

HSP 1 Score: 68.9 bits (167), Expect = 6.060e-12
Identity = 45/103 (43.69%), Postives = 61/103 (59.22%), Query Frame = 0 
Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 103
            G  GV ++ +E + R   E  VL AL+PR ++TVV+Q IS AG+LL+  LNA  +ALVDAGVP+RAL C  T AL   G+  +D             TFA ++
Sbjct:   85 GLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVISDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDADGNLVLDPTVKQEKEARAVLTFALDS 187
[Close]
BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: A0A6G1ALF1_CROCR (EXOS5 protein (Fragment) n=5 Tax=Laurasiatheria TaxID=314145 RepID=A0A6G1ALF1_CROCR)

HSP 1 Score: 68.2 bits (165), Expect = 7.820e-12
Identity = 45/103 (43.69%), Postives = 60/103 (58.25%), Query Frame = 0 
Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 103
            G  GV ++ +E + R   E  VL AL+PR ++TVV+Q IS AG+LL+  LNA  +ALVDAGVP+RAL C  T AL   G   +D             TFA ++
Sbjct:   85 GLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVISDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSEGTLVLDPTAKQEKEARAVLTFALDS 187
[Close]
BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: A0A8C6I3L2_MUSSI (Exosome component 5 n=1 Tax=Mus spicilegus TaxID=10103 RepID=A0A8C6I3L2_MUSSI)

HSP 1 Score: 68.6 bits (166), Expect = 8.020e-12
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 0 
Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 103
            G  GV ++ +E + R   E  VL AL+PR ++TVV+Q +S AG+LL+  LNA  +ALVDAGVP+RAL C  T AL   G+  +D             TFA ++
Sbjct:   69 GLPGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGNLVLDPTTKQEKEARAILTFALDS 171
[Close]
BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: UPI001486FC9F (exosome complex component RRP46 isoform X5 n=1 Tax=Arvicanthis niloticus TaxID=61156 RepID=UPI001486FC9F)

HSP 1 Score: 68.2 bits (165), Expect = 8.070e-12
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 0 
Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 103
            G  GV ++ +E + R   E  VL AL+PR ++TVV+Q +S AG+LL+  LNA  +ALVDAGVP+RAL C  T AL   G+  +D             TFA ++
Sbjct:   85 GLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGNLMLDPTTKQEKEARAVLTFALDS 187
[Close]
BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: EXOS5_MOUSE (Exosome complex component RRP46 n=30 Tax=Tetrapoda TaxID=32523 RepID=EXOS5_MOUSE)

HSP 1 Score: 68.6 bits (166), Expect = 8.460e-12
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 0 
Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 103
            G  GV ++ +E + R   E  VL AL+PR ++TVV+Q +S AG+LL+  LNA  +ALVDAGVP+RAL C  T AL   G+  +D             TFA ++
Sbjct:   85 GLPGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGNLVLDPTTKQEKEARAILTFALDS 187
[Close]
BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: UPI00032B11EE (exosome complex component RRP46 n=2 Tax=Ochotona TaxID=9977 RepID=UPI00032B11EE)

HSP 1 Score: 68.6 bits (166), Expect = 8.460e-12
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 0 
Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 103
            G  GV ++ +E++ R   E  VL AL+PR ++TVV+Q +S AG+LL+  LNA  +ALVDAGVP+RAL C  T AL   G   +D             TFA ++
Sbjct:   85 GLPGVAEKSREQLIRSTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLVLDPTVKQEKEARAVLTFALDS 187
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1S3GRL6_DIPOR2.050e-1243.69exosome complex component RRP46 n=2 Tax=Heteromyid... [more]
A0A8I6AB24_RAT2.480e-1242.72Exosome component 5 n=1 Tax=Rattus norvegicus TaxI... [more]
UPI00186B159C3.150e-1242.72exosome complex component RRP46 isoform X2 n=1 Tax... [more]
A0A8I6GHQ8_RAT4.660e-1242.72Exosome component 5 n=1 Tax=Rattus norvegicus TaxI... [more]
G3TBW9_LOXAF6.060e-1243.69Exosome component 5 n=2 Tax=Afrotheria TaxID=31179... [more]
A0A6G1ALF1_CROCR7.820e-1243.69EXOS5 protein (Fragment) n=5 Tax=Laurasiatheria Ta... [more]
A0A8C6I3L2_MUSSI8.020e-1242.72Exosome component 5 n=1 Tax=Mus spicilegus TaxID=1... [more]
UPI001486FC9F8.070e-1242.72exosome complex component RRP46 isoform X5 n=1 Tax... [more]
EXOS5_MOUSE8.460e-1242.72Exosome complex component RRP46 n=30 Tax=Tetrapoda... [more]
UPI00032B11EE8.460e-1242.72exosome complex component RRP46 n=2 Tax=Ochotona T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 1..103
e-value: 1.9E-25
score: 91.7
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 6..63
e-value: 4.3E-7
score: 30.5
NoneNo IPR availablePANTHERPTHR11953:SF1EXOSOME COMPLEX COMPONENT RRP46coord: 4..102
NoneNo IPR availablePANTHERPTHR11953EXOSOME COMPLEX COMPONENTcoord: 4..102
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 15..75
IPR036345Exoribonuclease, PH domain 2 superfamilySUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 63..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120759contigM-pyrifera_M_contig120759:113..421 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120759.4274.1mRNA_M-pyrifera_M_contig120759.4274.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig120759 113..421 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig120759.4274.1 ID=prot_M-pyrifera_M_contig120759.4274.1|Name=mRNA_M-pyrifera_M_contig120759.4274.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTAL
NAVSLALVDAGVPLRALVCACTVALSPTGDATVDADAEEERQARATFTFA
YNA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027408PNPase/RNase_PH_dom_sf
IPR001247ExoRNase_PH_dom1
IPR020568Ribosomal_S5_D2-typ_fold
IPR036345ExoRNase_PH_dom2_sf