prot_M-pyrifera_M_contig120255.4185.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig120255.4185.1
Unique Nameprot_M-pyrifera_M_contig120255.4185.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length107
Homology
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BLAST of mRNA_M-pyrifera_M_contig120255.4185.1 vs. uniprot
Match: A0A3D3R044_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A3D3R044_9PLAN)

HSP 1 Score: 224 bits (570), Expect = 2.290e-72
Identity = 103/106 (97.17%), Postives = 104/106 (98.11%), Query Frame = 0 
Query:    1 LGWSFYPNTATYNGHTICIQGVPLEILKALSRSPRGISSHDLMNQIWPRKSVNGETLRSHICSIRKCIKETLNVADDPVPHIGSGDTSGYRLNFELLKINAGDHKV 106
            LGWSFYPNTATYNGHT CIQGVPLEILKALSRSPRGISSHDLMNQ+WPRK VNGETLRSHICSIRKCIKETLNVADDPVPHIGSGDTSGYRLNFELLKINAGDHKV
Sbjct:  137 LGWSFYPNTATYNGHTFCIQGVPLEILKALSRSPRGISSHDLMNQVWPRKFVNGETLRSHICSIRKCIKETLNVADDPVPHIGSGDTSGYRLNFELLKINAGDHKV 242
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BLAST of mRNA_M-pyrifera_M_contig120255.4185.1 vs. uniprot
Match: A0A2E7KFP5_9PLAN (OmpR/PhoB-type domain-containing protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KFP5_9PLAN)

HSP 1 Score: 148 bits (374), Expect = 1.060e-42
Identity = 66/103 (64.08%), Postives = 79/103 (76.70%), Query Frame = 0 
Query:    2 GWSFYPNTATYNGHTICIQGVPLEILKALSRSPRGISSHDLMNQIWPRKSVNGETLRSHICSIRKCIKETLNVADDPVPHIGSGDTSGYRLNFELLKINAGDH 104
            GW F P+T  YNG    IQG P +ILKALS +P GIS  DL+  +WP   VN ETLRSHICSIRKCIK+TL  +DDPVPH+GSGDTSG++LNF +LK+NA D+
Sbjct:  134 GWKFSPDTVFYNGLQFSIQGKPQDILKALSEAPHGISKEDLIKTVWPDNEVNDETLRSHICSIRKCIKKTLQTSDDPVPHVGSGDTSGWKLNFAILKMNAEDN 236
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120255.4185.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A3D3R044_9PLAN2.290e-7297.17Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A2E7KFP5_9PLAN1.060e-4264.08OmpR/PhoB-type domain-containing protein n=2 Tax=G... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001867OmpR/PhoB-type DNA-binding domainPFAMPF00486Trans_reg_Ccoord: 25..92
e-value: 4.6E-6
score: 26.6
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 5..104
e-value: 2.2E-8
score: 35.6
IPR016032Signal transduction response regulator, C-terminal effectorSUPERFAMILY46894C-terminal effector domain of the bipartite response regulatorscoord: 7..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120255contigM-pyrifera_M_contig120255:3..323 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120255.4185.1mRNA_M-pyrifera_M_contig120255.4185.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig120255 3..323 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig120255.4185.1 ID=prot_M-pyrifera_M_contig120255.4185.1|Name=mRNA_M-pyrifera_M_contig120255.4185.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
LGWSFYPNTATYNGHTICIQGVPLEILKALSRSPRGISSHDLMNQIWPRK
SVNGETLRSHICSIRKCIKETLNVADDPVPHIGSGDTSGYRLNFELLKIN
AGDHKV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001867OmpR/PhoB-type_DNA-bd
IPR036388WH-like_DNA-bd_sf
IPR016032Sig_transdc_resp-reg_C-effctor