mRNA_M-pyrifera_M_contig120255.4185.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120255.4185.1
Unique NamemRNA_M-pyrifera_M_contig120255.4185.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120255.4185.1 vs. uniprot
Match: A0A3D3R044_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A3D3R044_9PLAN)

HSP 1 Score: 224 bits (570), Expect = 2.290e-72
Identity = 103/106 (97.17%), Postives = 104/106 (98.11%), Query Frame = 1 
Query:    1 LGWSFYPNTATYNGHTICIQGVPLEILKALSRSPRGISSHDLMNQIWPRKSVNGETLRSHICSIRKCIKETLNVADDPVPHIGSGDTSGYRLNFELLKINAGDHKV 318
            LGWSFYPNTATYNGHT CIQGVPLEILKALSRSPRGISSHDLMNQ+WPRK VNGETLRSHICSIRKCIKETLNVADDPVPHIGSGDTSGYRLNFELLKINAGDHKV
Sbjct:  137 LGWSFYPNTATYNGHTFCIQGVPLEILKALSRSPRGISSHDLMNQVWPRKFVNGETLRSHICSIRKCIKETLNVADDPVPHIGSGDTSGYRLNFELLKINAGDHKV 242
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BLAST of mRNA_M-pyrifera_M_contig120255.4185.1 vs. uniprot
Match: A0A2E7KFP5_9PLAN (OmpR/PhoB-type domain-containing protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KFP5_9PLAN)

HSP 1 Score: 148 bits (374), Expect = 1.060e-42
Identity = 66/103 (64.08%), Postives = 79/103 (76.70%), Query Frame = 1 
Query:    4 GWSFYPNTATYNGHTICIQGVPLEILKALSRSPRGISSHDLMNQIWPRKSVNGETLRSHICSIRKCIKETLNVADDPVPHIGSGDTSGYRLNFELLKINAGDH 312
            GW F P+T  YNG    IQG P +ILKALS +P GIS  DL+  +WP   VN ETLRSHICSIRKCIK+TL  +DDPVPH+GSGDTSG++LNF +LK+NA D+
Sbjct:  134 GWKFSPDTVFYNGLQFSIQGKPQDILKALSEAPHGISKEDLIKTVWPDNEVNDETLRSHICSIRKCIKKTLQTSDDPVPHVGSGDTSGWKLNFAILKMNAEDN 236
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120255.4185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A3D3R044_9PLAN2.290e-7297.17Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A2E7KFP5_9PLAN1.060e-4264.08OmpR/PhoB-type domain-containing protein n=2 Tax=G... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120255contigM-pyrifera_M_contig120255:3..323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.3660045-CDS-M-pyrifera_M_contig120255:2..3231622815722.3660045-CDS-M-pyrifera_M_contig120255:2..323Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120255 3..323 +
1692277538.3119256-CDS-M-pyrifera_M_contig120255:2..3231692277538.3119256-CDS-M-pyrifera_M_contig120255:2..323Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120255 3..323 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120255.4185.1prot_M-pyrifera_M_contig120255.4185.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120255 3..323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120255.4185.1

>prot_M-pyrifera_M_contig120255.4185.1 ID=prot_M-pyrifera_M_contig120255.4185.1|Name=mRNA_M-pyrifera_M_contig120255.4185.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
LGWSFYPNTATYNGHTICIQGVPLEILKALSRSPRGISSHDLMNQIWPRK
SVNGETLRSHICSIRKCIKETLNVADDPVPHIGSGDTSGYRLNFELLKIN
AGDHKV*
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mRNA from alignment at M-pyrifera_M_contig120255:3..323+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120255.4185.1 ID=mRNA_M-pyrifera_M_contig120255.4185.1|Name=mRNA_M-pyrifera_M_contig120255.4185.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig120255:3..323+ (Macrocystis pyrifera P11B4 male)
TTGGGTTGGTCGTTCTATCCAAATACGGCGACCTATAACGGGCATACAAT
TTGTATCCAGGGAGTGCCACTGGAAATCCTAAAAGCCTTGTCGCGATCCC
CACGAGGGATCTCAAGTCACGATCTAATGAATCAGATTTGGCCACGTAAA
TCTGTAAACGGAGAAACTCTGCGATCGCATATCTGCTCAATACGTAAGTG
TATTAAGGAGACATTGAATGTAGCAGACGACCCCGTTCCTCACATCGGTA
GCGGTGACACCTCAGGATATAGATTAAATTTCGAACTCCTGAAAATAAAC
GCCGGGGACCACAAAGTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120255:3..323+

>mRNA_M-pyrifera_M_contig120255.4185.1 ID=mRNA_M-pyrifera_M_contig120255.4185.1|Name=mRNA_M-pyrifera_M_contig120255.4185.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig120255:3..323+ (Macrocystis pyrifera P11B4 male)
TTGGGTTGGTCGTTCTATCCAAATACGGCGACCTATAACGGGCATACAAT
TTGTATCCAGGGAGTGCCACTGGAAATCCTAAAAGCCTTGTCGCGATCCC
CACGAGGGATCTCAAGTCACGATCTAATGAATCAGATTTGGCCACGTAAA
TCTGTAAACGGAGAAACTCTGCGATCGCATATCTGCTCAATACGTAAGTG
TATTAAGGAGACATTGAATGTAGCAGACGACCCCGTTCCTCACATCGGTA
GCGGTGACACCTCAGGATATAGATTAAATTTCGAACTCCTGAAAATAAAC
GCCGGGGACCACAAAGTCTGATTGGGTTGGTCGTTCTATCCAAATACGGC
GACCTATAACGGGCATACAATTTGTATCCAGGGAGTGCCACTGGAAATCC
TAAAAGCCTTGTCGCGATCCCCACGAGGGATCTCAAGTCACGATCTAATG
AATCAGATTTGGCCACGTAAATCTGTAAACGGAGAAACTCTGCGATCGCA
TATCTGCTCAATACGTAAGTGTATTAAGGAGACATTGAATGTAGCAGACG
ACCCCGTTCCTCACATCGGTAGCGGTGACACCTCAGGATATAGATTAAAT
TTCGAACTCCTGAAAATAAACGCCGGGGACCACAAAGTCTGA
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