prot_M-pyrifera_M_contig12002.4133.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig12002.4133.1
Unique Name	prot_M-pyrifera_M_contig12002.4133.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	46

Homology

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BLAST of mRNA_M-pyrifera_M_contig12002.4133.1 vs. uniprot
Match: A0A6H5JTL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL1_9PHAE)

HSP 1 Score: 45.4 bits (106), Expect = 7.950e-5
Identity = 19/44 (43.18%), Postives = 29/44 (65.91%), Query Frame = 0

Query:    2 VAGAMTDKMDTFLIGALQLLTSVALVGWVWSVVWGVEMVNRSLR 45
            + GA+    +T ++G LQL TS  ++GWVWS+ WG E++  S R
Sbjct:   39 IVGALACSCETLIVGLLQLFTSCIIIGWVWSIWWGWELLEVSRR 82

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig12002.4133.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig12002.4133.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5JTL1_9PHAE	7.950e-5	43.18	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026673	SPEC3/Stum	PFAM	PF15795	Spec3	coord: 10..42 e-value: 6.8E-9 score: 36.2
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..37
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 38..46
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	TMHMM	TMhelix		coord: 15..37

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig12002	contig	M-pyrifera_M_contig12002:4134..4271 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig12002.4133.1	mRNA_M-pyrifera_M_contig12002.4133.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig12002 4122..4271 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig12002.4133.1 ID=prot_M-pyrifera_M_contig12002.4133.1|Name=mRNA_M-pyrifera_M_contig12002.4133.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=46bp
MVAGAMTDKMDTFLIGALQLLTSVALVGWVWSVVWGVEMVNRSLRR

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR026673	SPEC3/Stum