mRNA_M-pyrifera_M_contig12002.4133.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12002.4133.1
Unique NamemRNA_M-pyrifera_M_contig12002.4133.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12002.4133.1 vs. uniprot
Match: A0A6H5JTL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL1_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.280e-7
Identity = 22/49 (44.90%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 GLGTMVAGAMTDKMDTFLIGALQLLTSVALVGWVWSVVWGVEMVNRSLR 147
            G+GT++ GA+    +T ++G LQL TS  ++GWVWS+ WG E++  S R
Sbjct:   34 GVGTIIVGALACSCETLIVGLLQLFTSCIIIGWVWSIWWGWELLEVSRR 82
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BLAST of mRNA_M-pyrifera_M_contig12002.4133.1 vs. uniprot
Match: A0A6A5C172_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5C172_NAEFO)

HSP 1 Score: 49.3 bits (116), Expect = 2.870e-6
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:    1 GLGTMVAGAMTDKMDT----FLIGALQLLTSVALVGWVWSVVWGVEMVNRS 141
            G+GT+VAG +T K        + G LQ+L SV L+GW+WS+ WGV +  RS
Sbjct:   37 GVGTLVAGCVTSKKKKVKFCIIFGLLQMLLSVVLIGWLWSIFWGVFIYKRS 87
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BLAST of mRNA_M-pyrifera_M_contig12002.4133.1 vs. uniprot
Match: UPI001CFC9FD2 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFC9FD2)

HSP 1 Score: 49.3 bits (116), Expect = 2.930e-6
Identity = 26/51 (50.98%), Postives = 31/51 (60.78%), Query Frame = 1 
Query:    1 GLGTMVAGAMTDKMDT----FLIGALQLLTSVALVGWVWSVVWGVEMVNRS 141
            G+GT+VAG +T K        + G LQ+L SV L GW WSV WGV M  RS
Sbjct:   38 GVGTLVAGCVTSKKKKVKFCIIFGLLQMLLSVVLFGWAWSVFWGVFMFKRS 88
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BLAST of mRNA_M-pyrifera_M_contig12002.4133.1 vs. uniprot
Match: UPI001D057A31 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001D057A31)

HSP 1 Score: 48.5 bits (114), Expect = 5.060e-6
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 GLGTMVAGAMTDKMDTFLI--GALQLLTSVALVGWVWSVVWGVEMVNRS 141
            G+GT+VA  ++ K   + I  G LQ  TS  LVGW+WSVVWG+ M  R+
Sbjct:   35 GIGTLVAACVSKKKKKYSIIFGLLQFFTSFLLVGWIWSVVWGIFMFKRN 83
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BLAST of mRNA_M-pyrifera_M_contig12002.4133.1 vs. uniprot
Match: D8LY75_BLAHO (Thioredoxin domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LY75_BLAHO)

HSP 1 Score: 50.4 bits (119), Expect = 6.830e-6
Identity = 21/47 (44.68%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 GLGTMVAGAMTDKMD-TFLIGALQLLTSVALVGWVWSVVWGVEMVNR 138
            G+GT++   M      T+L G LQLL SV ++GW+WS++WG+ M++R
Sbjct:   37 GIGTLIGAVMCHSNGLTYLFGVLQLLLSVIIIGWIWSILWGIFMIDR 83
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BLAST of mRNA_M-pyrifera_M_contig12002.4133.1 vs. uniprot
Match: A0A7S4IT76_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IT76_9EUKA)

HSP 1 Score: 47.0 bits (110), Expect = 5.910e-5
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 GLGTMVAGAMTDKMDTFLI--GALQLLTSVALVGWVWSVVWGVEMVNRS 141
            G GT++ GA+ DK D   +  G LQLLT++ ++GW+WS+VWG+ M  R+
Sbjct:   49 GTGTIL-GAIIDKCDMVNVCFGILQLLTALLIIGWLWSIVWGIAMYKRN 96
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BLAST of mRNA_M-pyrifera_M_contig12002.4133.1 vs. uniprot
Match: J4C961_THEOR (Uncharacterized protein n=4 Tax=Theileria orientalis TaxID=68886 RepID=J4C961_THEOR)

HSP 1 Score: 45.4 bits (106), Expect = 9.220e-5
Identity = 20/49 (40.82%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 GLGTMVAGAMTDKMDTFLIGALQLLTSVALVGWVWSVVWGVEMVNRSLR 147
            G+GT  +G   D M+  +IG LQ+L    +VGW WSV+WG+ M+ + ++
Sbjct:   38 GIGTAFSGIYDDCMEDVIIGLLQMLP---IVGWAWSVIWGITMIFKRMK 83
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12002.4133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JTL1_9PHAE1.280e-744.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A5C172_NAEFO2.870e-647.06Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
UPI001CFC9FD22.930e-650.98uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
UPI001D057A315.060e-648.98uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
D8LY75_BLAHO6.830e-644.68Thioredoxin domain-containing protein n=1 Tax=Blas... [more]
A0A7S4IT76_9EUKA5.910e-546.94Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
J4C961_THEOR9.220e-540.82Uncharacterized protein n=4 Tax=Theileria oriental... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12002contigM-pyrifera_M_contig12002:4122..4271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size150
Cds size138
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.0684843-UTR-M-pyrifera_M_contig12002:4121..41331622815720.0684843-UTR-M-pyrifera_M_contig12002:4121..4133Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12002 4122..4133 +
1692277537.404733-UTR-M-pyrifera_M_contig12002:4121..41331692277537.404733-UTR-M-pyrifera_M_contig12002:4121..4133Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12002 4122..4133 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.081266-CDS-M-pyrifera_M_contig12002:4133..42711622815720.081266-CDS-M-pyrifera_M_contig12002:4133..4271Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12002 4134..4271 +
1692277537.4145083-CDS-M-pyrifera_M_contig12002:4133..42711692277537.4145083-CDS-M-pyrifera_M_contig12002:4133..4271Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12002 4134..4271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12002.4133.1prot_M-pyrifera_M_contig12002.4133.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12002 4134..4271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12002.4133.1

>prot_M-pyrifera_M_contig12002.4133.1 ID=prot_M-pyrifera_M_contig12002.4133.1|Name=mRNA_M-pyrifera_M_contig12002.4133.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=46bp
MVAGAMTDKMDTFLIGALQLLTSVALVGWVWSVVWGVEMVNRSLRR
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mRNA from alignment at M-pyrifera_M_contig12002:4122..4271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12002.4133.1 ID=mRNA_M-pyrifera_M_contig12002.4133.1|Name=mRNA_M-pyrifera_M_contig12002.4133.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=150bp|location=Sequence derived from alignment at M-pyrifera_M_contig12002:4122..4271+ (Macrocystis pyrifera P11B4 male)
GGCCTCGGCACGATGGTGGCGGGAGCGATGACGGACAAGATGGACACGTT
TCTCATCGGGGCGCTTCAGCTTTTAACCTCGGTCGCGCTCGTGGGATGGG
TGTGGTCGGTCGTCTGGGGGGTCGAGATGGTCAACAGGTCTCTCAGGCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12002:4122..4271+

>mRNA_M-pyrifera_M_contig12002.4133.1 ID=mRNA_M-pyrifera_M_contig12002.4133.1|Name=mRNA_M-pyrifera_M_contig12002.4133.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig12002:4122..4271+ (Macrocystis pyrifera P11B4 male)
ATGGTGGCGGGAGCGATGACGGACAAGATGGACACGTTTCTCATCGGGGC
GCTTCAGCTTTTAACCTCGGTCGCGCTCGTGGGATGGGTGTGGTCGGTCG
TCTGGGGGGTCGAGATGGTCAACAGGTCTCTCAGGCGCATGGTGGCGGGA
GCGATGACGGACAAGATGGACACGTTTCTCATCGGGGCGCTTCAGCTTTT
AACCTCGGTCGCGCTCGTGGGATGGGTGTGGTCGGTCGTCTGGGGGGTCG
AGATGGTCAACAGGTCTCTCAGGCGC
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