prot_M-pyrifera_M_contig110641.2235.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig110641.2235.1
Unique Nameprot_M-pyrifera_M_contig110641.2235.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length44
Homology
BLAST of mRNA_M-pyrifera_M_contig110641.2235.1 vs. uniprot
Match: F2UA69_SALR5 (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UA69_SALR5)

HSP 1 Score: 67.4 bits (163), Expect = 2.320e-13
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 0
Query:    2 FRTLTGKTIVVELKNDLRIKGTLHSVDQFLNFKLDDATCENVD 44
            F+TL GKT+VVELKNDL I+GTL SVDQFLN KLDD T  NVD
Sbjct:   24 FKTLVGKTVVVELKNDLSIQGTLTSVDQFLNIKLDDITVGNVD 66          
BLAST of mRNA_M-pyrifera_M_contig110641.2235.1 vs. uniprot
Match: A0A1M8A4H9_MALS4 (U6 snRNA-associated Sm-like protein LSm2 n=6 Tax=Malassezia TaxID=55193 RepID=A0A1M8A4H9_MALS4)

HSP 1 Score: 62.4 bits (150), Expect = 1.470e-11
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 0
Query:    2 FRTLTGKTIVVELKNDLRIKGTLHSVDQFLNFKLDD 37
            F+TLTG+T+ VELKNDL I+GTL SVDQFLNFKLDD
Sbjct:    7 FKTLTGQTVTVELKNDLAIQGTLKSVDQFLNFKLDD 42          
BLAST of mRNA_M-pyrifera_M_contig110641.2235.1 vs. uniprot
Match: A0A0G4IYK4_PLABS (Sm domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IYK4_PLABS)

HSP 1 Score: 62.4 bits (150), Expect = 3.450e-11
Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 0
Query:    2 FRTLTGKTIVVELKNDLRIKGTLHSVDQFLNFKLDDA 38
            F+TLTGK +V+ELKNDLR+KG LHSVDQ+LN KLD+ 
Sbjct:   45 FKTLTGKGVVIELKNDLRLKGVLHSVDQYLNIKLDEV 81          
BLAST of mRNA_M-pyrifera_M_contig110641.2235.1 vs. uniprot
Match: A0A0L0EYE4_9EUKA (Sm domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0EYE4_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 5.380e-11
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 0
Query:    2 FRTLTGKTIVVELKNDLRIKGTLHSVDQFLNFKLDDATCENVD 44
            F+TL    +VVELKN+L+I+G LHSVDQFLN KL D T ENV+
Sbjct:    6 FKTLVDSDVVVELKNELKIQGKLHSVDQFLNIKLKDITVENVE 48          
BLAST of mRNA_M-pyrifera_M_contig110641.2235.1 vs. uniprot
Match: A0A132AEP3_SARSC (U6 snRNA-associated Sm-like protein LSm2 n=4 Tax=Psoroptidia TaxID=223472 RepID=A0A132AEP3_SARSC)

HSP 1 Score: 60.8 bits (146), Expect = 5.550e-11
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 0
Query:    2 FRTLTGKTIVVELKNDLRIKGTLHSVDQFLNFKLDDAT 39
            F+TL GK I+VELKNDL I GTLH+VDQ+LNFKL D T
Sbjct:    7 FKTLVGKDIIVELKNDLAIAGTLHAVDQYLNFKLTDIT 44          
BLAST of mRNA_M-pyrifera_M_contig110641.2235.1 vs. uniprot
Match: B8N5Y8_ASPFN (U6 snRNA-associated Sm-like protein LSm2 n=47 Tax=Eurotiales TaxID=5042 RepID=B8N5Y8_ASPFN)

HSP 1 Score: 60.5 bits (145), Expect = 8.870e-11
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 0
Query:    2 FRTLTGKTIVVELKNDLRIKGTLHSVDQFLNFKLDDATCENVD 44
            F+TLT +T+++ELKND+RI+GTL SVDQ+LN KLDD    ++D
Sbjct:    7 FKTLTNQTVIIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLD 49          
BLAST of mRNA_M-pyrifera_M_contig110641.2235.1 vs. uniprot
Match: A0A1D8PSP7_CANAL (U6 snRNA-associated Sm-like protein LSm2 n=5 Tax=Candida TaxID=1535326 RepID=A0A1D8PSP7_CANAL)

HSP 1 Score: 59.7 bits (143), Expect = 1.700e-10
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 0
Query:    2 FRTLTGKTIVVELKNDLRIKGTLHSVDQFLNFKLDDATCEN 42
            F+TL  + + VELKND+ IKGTL SVDQFLN KLD+ TC N
Sbjct:    7 FKTLVDQEVTVELKNDIEIKGTLKSVDQFLNLKLDNITCTN 47          
BLAST of mRNA_M-pyrifera_M_contig110641.2235.1 vs. uniprot
Match: C5M2V1_CANTT (U6 snRNA-associated Sm-like protein LSm2 n=5 Tax=Candida TaxID=1535326 RepID=C5M2V1_CANTT)

HSP 1 Score: 59.7 bits (143), Expect = 1.700e-10
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 0
Query:    2 FRTLTGKTIVVELKNDLRIKGTLHSVDQFLNFKLDDATCEN 42
            F+TL  + + VELKND+ IKGTL SVDQFLN KLD+ TC N
Sbjct:    7 FKTLVDQEVTVELKNDMEIKGTLKSVDQFLNLKLDNITCTN 47          
BLAST of mRNA_M-pyrifera_M_contig110641.2235.1 vs. uniprot
Match: A0A0M0JF59_9EUKA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JF59_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 1.870e-10
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 0
Query:    2 FRTLTGKTIVVELKNDLRIKGTLHSVDQFLNFKLDDATCENV 43
            F+TL GK IVVELKNDL I+GTLHSVDQ+LN KL + + E+V
Sbjct:    7 FKTLVGKEIVVELKNDLSIRGTLHSVDQYLNVKLLNISVEDV 48          
BLAST of mRNA_M-pyrifera_M_contig110641.2235.1 vs. uniprot
Match: A0A2H2IRM7_CAEJA (Sm domain-containing protein n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2IRM7_CAEJA)

HSP 1 Score: 59.3 bits (142), Expect = 1.900e-10
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 0
Query:    2 FRTLTGKTIVVELKNDLRIKGTLHSVDQFLNFKLDDATCENVD 44
            F++L GK +VVELKNDL I GTLHSVDQ+LN KL D T  + D
Sbjct:    7 FKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDITVSDTD 49          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110641.2235.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F2UA69_SALR52.320e-1376.74U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=S... [more]
A0A1M8A4H9_MALS41.470e-1180.56U6 snRNA-associated Sm-like protein LSm2 n=6 Tax=M... [more]
A0A0G4IYK4_PLABS3.450e-1172.97Sm domain-containing protein n=1 Tax=Plasmodiophor... [more]
A0A0L0EYE4_9EUKA5.380e-1165.12Sm domain-containing protein n=1 Tax=Sphaeroforma ... [more]
A0A132AEP3_SARSC5.550e-1173.68U6 snRNA-associated Sm-like protein LSm2 n=4 Tax=P... [more]
B8N5Y8_ASPFN8.870e-1160.47U6 snRNA-associated Sm-like protein LSm2 n=47 Tax=... [more]
A0A1D8PSP7_CANAL1.700e-1065.85U6 snRNA-associated Sm-like protein LSm2 n=5 Tax=C... [more]
C5M2V1_CANTT1.700e-1065.85U6 snRNA-associated Sm-like protein LSm2 n=5 Tax=C... [more]
A0A0M0JF59_9EUKA1.870e-1069.05U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=C... [more]
A0A2H2IRM7_CAEJA1.900e-1065.12Sm domain-containing protein n=1 Tax=Caenorhabditi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 1..44
e-value: 1.6E-14
score: 55.1
NoneNo IPR availablePANTHERPTHR13829:SF2U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM2coord: 1..42
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 3..41
e-value: 4.1E-11
score: 42.4
IPR016654U6 snRNA-associated Sm-like protein LSm2PANTHERPTHR13829SNRNP CORE PROTEIN FAMILY MEMBERcoord: 1..42
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 2..40

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110641contigM-pyrifera_M_contig110641:466..597 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110641.2235.1mRNA_M-pyrifera_M_contig110641.2235.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig110641 436..597 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig110641.2235.1 ID=prot_M-pyrifera_M_contig110641.2235.1|Name=mRNA_M-pyrifera_M_contig110641.2235.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=44bp
MFRTLTGKTIVVELKNDLRIKGTLHSVDQFLNFKLDDATCENVD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016654U6_snRNA_Lsm2
IPR010920LSM_dom_sf