prot_M-pyrifera_M_contig104948.1060.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig104948.1060.1
Unique Nameprot_M-pyrifera_M_contig104948.1060.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length96
Homology
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: UPI001BC98151 (U6 snRNA-associated Sm-like protein LSm7 isoform X1 n=1 Tax=Vulpes lagopus TaxID=494514 RepID=UPI001BC98151)

HSP 1 Score: 90.1 bits (222), Expect = 4.300e-21
Identity = 55/101 (54.46%), Postives = 64/101 (63.37%), Query Frame = 0
Query:    1 DVQSRAKESILDLEKHVDKRVRVKFQGGREGARS----AWPLSHPHPVVSPPCVCCPLSGCPDA-VVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 96
            D + + KESILDL K++DK +RVKFQGGRE   S    A    HP P          LS  P     G+LKGFDPL+NLVLD TVEY+RDP DQYKLT+ T
Sbjct:    3 DKEKKKKESILDLSKYIDKTIRVKFQGGREAQDSCSGKASLTLHPGPHAFGVSSWYHLSPFPVLRTSGILKGFDPLLNLVLDGTVEYMRDPDDQYKLTEDT 103          
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: UPI001E1BF454 (U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=Desmodus rotundus TaxID=9430 RepID=UPI001E1BF454)

HSP 1 Score: 89.4 bits (220), Expect = 2.450e-20
Identity = 52/105 (49.52%), Postives = 65/105 (61.90%), Query Frame = 0
Query:    1 DVQSRAKESILDLEKHVDKRVRVKFQGGREGAR----SAWP-----LSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 96
            D + + KESILDL K++DK +RVKFQGGREG +    S W      + H         V C       +  G+LKGFDPL+NLVLD T+EY+RDP DQYKLT+ T
Sbjct:   49 DKEKKKKESILDLSKYIDKTIRVKFQGGREGCKGTCCSTWSDFTRLIYHQ--------VNCQGHSPALSSSGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDT 145          
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: UPI0008F9BC15 (U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9BC15)

HSP 1 Score: 83.2 bits (204), Expect = 1.120e-18
Identity = 45/94 (47.87%), Postives = 55/94 (58.51%), Query Frame = 0
Query:    3 QSRAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 96
            + R KESILDL K+++K+++VKF GGRE                              V G+LKG+DPLVNLVLD T+EYLRDP D YKLTD T
Sbjct:   14 EKRRKESILDLSKYLEKKIKVKFAGGRE------------------------------VSGILKGYDPLVNLVLDSTIEYLRDPDDPYKLTDDT 77          
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: UPI0005293DB4 (U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=Mesitornis unicolor TaxID=54374 RepID=UPI0005293DB4)

HSP 1 Score: 83.6 bits (205), Expect = 1.400e-18
Identity = 47/96 (48.96%), Postives = 56/96 (58.33%), Query Frame = 0
Query:    3 QSRAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCVCCPLSGCPDAVV--GVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 96
            + + KESILDL K++DK +RVKFQGGREG                                 GVLKGFDPL+NLVLD T+EY+RDP DQYKLT+ T
Sbjct:    3 EKKKKESILDLSKYIDKTIRVKFQGGREGKDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDT 98          
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: A0A183IKG7_9BILA (Sm domain-containing protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183IKG7_9BILA)

HSP 1 Score: 82.0 bits (201), Expect = 2.430e-18
Identity = 44/96 (45.83%), Postives = 56/96 (58.33%), Query Frame = 0
Query:    1 DVQSRAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 96
            D + + KES++DL K++DK++RVKFQGGRE +                              G+LKGFD L+NLVLD TVEYLRDP D YKLT+ T
Sbjct:    3 DRERKKKESVIDLSKYIDKKIRVKFQGGREAS------------------------------GILKGFDALLNLVLDNTVEYLRDPDDPYKLTNDT 68          
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: A0A834FIR9_ORYME (U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=Oryzias melastigma TaxID=30732 RepID=A0A834FIR9_ORYME)

HSP 1 Score: 80.9 bits (198), Expect = 1.810e-17
Identity = 49/108 (45.37%), Postives = 60/108 (55.56%), Query Frame = 0
Query:    1 DVQSRAKESILDLEKHVDKRVRVKFQGGREG------------ARSAWPLSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 96
            D + + KESI DL K++DK +RVKFQGGREG             +  W  S          +       P    GVLKGFDPL+NLVLD T+EY+RDP DQ KLT+ T
Sbjct:    3 DKEKKKKESIFDLSKYIDKPIRVKFQGGREGRWLSVGVIGGLMTKYQWRGSIFQLFFFSLTI-------PSLASGVLKGFDPLLNLVLDGTIEYMRDPDDQLKLTEDT 103          
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: F2UFC0_SALR5 (Sm domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UFC0_SALR5)

HSP 1 Score: 78.2 bits (191), Expect = 9.350e-17
Identity = 44/94 (46.81%), Postives = 55/94 (58.51%), Query Frame = 0
Query:    3 QSRAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 96
            Q R ++ ILDLEK+VDK++RVKF GGRE                              VVGVL+G+DPL NLVL +T+E+LRDPSD  K+TD T
Sbjct:    7 QKRERKHILDLEKYVDKKLRVKFSGGRE------------------------------VVGVLQGYDPLSNLVLSDTIEFLRDPSDLSKITDKT 70          
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: UPI000719ADFF (U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719ADFF)

HSP 1 Score: 78.2 bits (191), Expect = 9.350e-17
Identity = 43/94 (45.74%), Postives = 53/94 (56.38%), Query Frame = 0
Query:    1 DVQSRAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTD 94
            D   + KESILDL K++DK++RVKF GGRE +                              GVLKG+DPL+NLVLD T EYLRDP D Y+LT+
Sbjct:    9 DKDRKKKESILDLSKYLDKKIRVKFHGGREAS------------------------------GVLKGYDPLLNLVLDGTTEYLRDPDDPYRLTE 72          
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: A0A819DBB2_9BILA (Hypothetical protein n=5 Tax=Bdelloidea TaxID=44578 RepID=A0A819DBB2_9BILA)

HSP 1 Score: 77.4 bits (189), Expect = 1.600e-16
Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 0
Query:    1 DVQSRAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 96
            D   R KE+I+DL K++DKR+RVKF GGRE +                              GVLKG+D L+NLVLD+T+EYLRDP D+YK+++ T
Sbjct:    3 DSVGRRKENIVDLNKYLDKRIRVKFNGGRECS------------------------------GVLKGYDQLLNLVLDQTIEYLRDPDDEYKISEDT 68          
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: A0A815DJF1_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A815DJF1_ADIRI)

HSP 1 Score: 75.9 bits (185), Expect = 3.930e-16
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 0
Query:    5 RAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 96
            R KE+I+DL K++DKR+RVKF GGRE +                              G+LKG+D L+NLVLD+T+EYLRDP D+YK+++ T
Sbjct:    7 RRKENIVDLNKYLDKRIRVKFNGGRECS------------------------------GMLKGYDQLLNLVLDQTIEYLRDPDDEYKISEDT 68          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001BC981514.300e-2154.46U6 snRNA-associated Sm-like protein LSm7 isoform X... [more]
UPI001E1BF4542.450e-2049.52U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=D... [more]
UPI0008F9BC151.120e-1847.87U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=B... [more]
UPI0005293DB41.400e-1848.96U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=M... [more]
A0A183IKG7_9BILA2.430e-1845.83Sm domain-containing protein n=1 Tax=Soboliphyme b... [more]
A0A834FIR9_ORYME1.810e-1745.37U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=O... [more]
F2UFC0_SALR59.350e-1746.81Sm domain-containing protein n=1 Tax=Salpingoeca r... [more]
UPI000719ADFF9.350e-1745.74U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=P... [more]
A0A819DBB2_9BILA1.600e-1643.75Hypothetical protein n=5 Tax=Bdelloidea TaxID=4457... [more]
A0A815DJF1_ADIRI3.930e-1643.48Hypothetical protein n=1 Tax=Adineta ricciae TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePIRSFPIRSF037188Lsm7coord: 1..33
e-value: 1.5E-8
score: 32.4
coord: 50..96
e-value: 8.8E-12
score: 42.9
NoneNo IPR availablePANTHERPTHR10553:SF5U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7coord: 4..96
NoneNo IPR availablePANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 4..96
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 61..87
e-value: 6.8E-7
score: 28.9
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 61..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104948contigM-pyrifera_M_contig104948:3..388 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104948.1060.1mRNA_M-pyrifera_M_contig104948.1060.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig104948 3..388 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig104948.1060.1 ID=prot_M-pyrifera_M_contig104948.1060.1|Name=mRNA_M-pyrifera_M_contig104948.1060.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
DVQSRAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCV
CCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf