mRNA_M-pyrifera_M_contig104948.1060.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: UPI001BC98151 (U6 snRNA-associated Sm-like protein LSm7 isoform X1 n=1 Tax=Vulpes lagopus TaxID=494514 RepID=UPI001BC98151) HSP 1 Score: 90.1 bits (222), Expect = 4.300e-21 Identity = 55/101 (54.46%), Postives = 64/101 (63.37%), Query Frame = 1 Query: 1 DVQSRAKESILDLEKHVDKRVRVKFQGGREGARS----AWPLSHPHPVVSPPCVCCPLSGCPDA-VVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 288 D + + KESILDL K++DK +RVKFQGGRE S A HP P LS P G+LKGFDPL+NLVLD TVEY+RDP DQYKLT+ T Sbjct: 3 DKEKKKKESILDLSKYIDKTIRVKFQGGREAQDSCSGKASLTLHPGPHAFGVSSWYHLSPFPVLRTSGILKGFDPLLNLVLDGTVEYMRDPDDQYKLTEDT 103
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: UPI001E1BF454 (U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=Desmodus rotundus TaxID=9430 RepID=UPI001E1BF454) HSP 1 Score: 89.4 bits (220), Expect = 2.450e-20 Identity = 52/105 (49.52%), Postives = 65/105 (61.90%), Query Frame = 1 Query: 1 DVQSRAKESILDLEKHVDKRVRVKFQGGREGAR----SAWP-----LSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 288 D + + KESILDL K++DK +RVKFQGGREG + S W + H V C + G+LKGFDPL+NLVLD T+EY+RDP DQYKLT+ T Sbjct: 49 DKEKKKKESILDLSKYIDKTIRVKFQGGREGCKGTCCSTWSDFTRLIYHQ--------VNCQGHSPALSSSGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDT 145
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: UPI0008F9BC15 (U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9BC15) HSP 1 Score: 83.2 bits (204), Expect = 1.120e-18 Identity = 45/94 (47.87%), Postives = 55/94 (58.51%), Query Frame = 1 Query: 7 QSRAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 288 + R KESILDL K+++K+++VKF GGRE V G+LKG+DPLVNLVLD T+EYLRDP D YKLTD T Sbjct: 14 EKRRKESILDLSKYLEKKIKVKFAGGRE------------------------------VSGILKGYDPLVNLVLDSTIEYLRDPDDPYKLTDDT 77
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: UPI0005293DB4 (U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=Mesitornis unicolor TaxID=54374 RepID=UPI0005293DB4) HSP 1 Score: 83.6 bits (205), Expect = 1.400e-18 Identity = 47/96 (48.96%), Postives = 56/96 (58.33%), Query Frame = 1 Query: 7 QSRAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCVCCPLSGCPDAVV--GVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 288 + + KESILDL K++DK +RVKFQGGREG GVLKGFDPL+NLVLD T+EY+RDP DQYKLT+ T Sbjct: 3 EKKKKESILDLSKYIDKTIRVKFQGGREGKDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDT 98
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: A0A183IKG7_9BILA (Sm domain-containing protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183IKG7_9BILA) HSP 1 Score: 82.0 bits (201), Expect = 2.430e-18 Identity = 44/96 (45.83%), Postives = 56/96 (58.33%), Query Frame = 1 Query: 1 DVQSRAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 288 D + + KES++DL K++DK++RVKFQGGRE + G+LKGFD L+NLVLD TVEYLRDP D YKLT+ T Sbjct: 3 DRERKKKESVIDLSKYIDKKIRVKFQGGREAS------------------------------GILKGFDALLNLVLDNTVEYLRDPDDPYKLTNDT 68
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: A0A834FIR9_ORYME (U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=Oryzias melastigma TaxID=30732 RepID=A0A834FIR9_ORYME) HSP 1 Score: 80.9 bits (198), Expect = 1.810e-17 Identity = 49/108 (45.37%), Postives = 60/108 (55.56%), Query Frame = 1 Query: 1 DVQSRAKESILDLEKHVDKRVRVKFQGGREG------------ARSAWPLSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 288 D + + KESI DL K++DK +RVKFQGGREG + W S + P GVLKGFDPL+NLVLD T+EY+RDP DQ KLT+ T Sbjct: 3 DKEKKKKESIFDLSKYIDKPIRVKFQGGREGRWLSVGVIGGLMTKYQWRGSIFQLFFFSLTI-------PSLASGVLKGFDPLLNLVLDGTIEYMRDPDDQLKLTEDT 103
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: F2UFC0_SALR5 (Sm domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UFC0_SALR5) HSP 1 Score: 78.2 bits (191), Expect = 9.350e-17 Identity = 44/94 (46.81%), Postives = 55/94 (58.51%), Query Frame = 1 Query: 7 QSRAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 288 Q R ++ ILDLEK+VDK++RVKF GGRE VVGVL+G+DPL NLVL +T+E+LRDPSD K+TD T Sbjct: 7 QKRERKHILDLEKYVDKKLRVKFSGGRE------------------------------VVGVLQGYDPLSNLVLSDTIEFLRDPSDLSKITDKT 70
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: UPI000719ADFF (U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719ADFF) HSP 1 Score: 78.2 bits (191), Expect = 9.350e-17 Identity = 43/94 (45.74%), Postives = 53/94 (56.38%), Query Frame = 1 Query: 1 DVQSRAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTD 282 D + KESILDL K++DK++RVKF GGRE + GVLKG+DPL+NLVLD T EYLRDP D Y+LT+ Sbjct: 9 DKDRKKKESILDLSKYLDKKIRVKFHGGREAS------------------------------GVLKGYDPLLNLVLDGTTEYLRDPDDPYRLTE 72
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: A0A819DBB2_9BILA (Hypothetical protein n=5 Tax=Bdelloidea TaxID=44578 RepID=A0A819DBB2_9BILA) HSP 1 Score: 77.4 bits (189), Expect = 1.600e-16 Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 1 Query: 1 DVQSRAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 288 D R KE+I+DL K++DKR+RVKF GGRE + GVLKG+D L+NLVLD+T+EYLRDP D+YK+++ T Sbjct: 3 DSVGRRKENIVDLNKYLDKRIRVKFNGGRECS------------------------------GVLKGYDQLLNLVLDQTIEYLRDPDDEYKISEDT 68
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: A0A815DJF1_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A815DJF1_ADIRI) HSP 1 Score: 75.9 bits (185), Expect = 3.930e-16 Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 1 Query: 13 RAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 288 R KE+I+DL K++DKR+RVKF GGRE + G+LKG+D L+NLVLD+T+EYLRDP D+YK+++ T Sbjct: 7 RRKENIVDLNKYLDKRIRVKFNGGRECS------------------------------GMLKGYDQLLNLVLDQTIEYLRDPDDEYKISEDT 68 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig104948.1060.1 >prot_M-pyrifera_M_contig104948.1060.1 ID=prot_M-pyrifera_M_contig104948.1060.1|Name=mRNA_M-pyrifera_M_contig104948.1060.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp DVQSRAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCVback to top mRNA from alignment at M-pyrifera_M_contig104948:3..388- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig104948.1060.1 ID=mRNA_M-pyrifera_M_contig104948.1060.1|Name=mRNA_M-pyrifera_M_contig104948.1060.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=386bp|location=Sequence derived from alignment at M-pyrifera_M_contig104948:3..388- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig104948:3..388- >mRNA_M-pyrifera_M_contig104948.1060.1 ID=mRNA_M-pyrifera_M_contig104948.1060.1|Name=mRNA_M-pyrifera_M_contig104948.1060.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig104948:3..388- (Macrocystis pyrifera P11B4 male)back to top |