mRNA_M-pyrifera_M_contig104948.1060.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104948.1060.1
Unique NamemRNA_M-pyrifera_M_contig104948.1060.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: UPI001BC98151 (U6 snRNA-associated Sm-like protein LSm7 isoform X1 n=1 Tax=Vulpes lagopus TaxID=494514 RepID=UPI001BC98151)

HSP 1 Score: 90.1 bits (222), Expect = 4.300e-21
Identity = 55/101 (54.46%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 DVQSRAKESILDLEKHVDKRVRVKFQGGREGARS----AWPLSHPHPVVSPPCVCCPLSGCPDA-VVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 288
            D + + KESILDL K++DK +RVKFQGGRE   S    A    HP P          LS  P     G+LKGFDPL+NLVLD TVEY+RDP DQYKLT+ T
Sbjct:    3 DKEKKKKESILDLSKYIDKTIRVKFQGGREAQDSCSGKASLTLHPGPHAFGVSSWYHLSPFPVLRTSGILKGFDPLLNLVLDGTVEYMRDPDDQYKLTEDT 103          
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: UPI001E1BF454 (U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=Desmodus rotundus TaxID=9430 RepID=UPI001E1BF454)

HSP 1 Score: 89.4 bits (220), Expect = 2.450e-20
Identity = 52/105 (49.52%), Postives = 65/105 (61.90%), Query Frame = 1
Query:    1 DVQSRAKESILDLEKHVDKRVRVKFQGGREGAR----SAWP-----LSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 288
            D + + KESILDL K++DK +RVKFQGGREG +    S W      + H         V C       +  G+LKGFDPL+NLVLD T+EY+RDP DQYKLT+ T
Sbjct:   49 DKEKKKKESILDLSKYIDKTIRVKFQGGREGCKGTCCSTWSDFTRLIYHQ--------VNCQGHSPALSSSGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDT 145          
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: UPI0008F9BC15 (U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9BC15)

HSP 1 Score: 83.2 bits (204), Expect = 1.120e-18
Identity = 45/94 (47.87%), Postives = 55/94 (58.51%), Query Frame = 1
Query:    7 QSRAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 288
            + R KESILDL K+++K+++VKF GGRE                              V G+LKG+DPLVNLVLD T+EYLRDP D YKLTD T
Sbjct:   14 EKRRKESILDLSKYLEKKIKVKFAGGRE------------------------------VSGILKGYDPLVNLVLDSTIEYLRDPDDPYKLTDDT 77          
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: UPI0005293DB4 (U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=Mesitornis unicolor TaxID=54374 RepID=UPI0005293DB4)

HSP 1 Score: 83.6 bits (205), Expect = 1.400e-18
Identity = 47/96 (48.96%), Postives = 56/96 (58.33%), Query Frame = 1
Query:    7 QSRAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCVCCPLSGCPDAVV--GVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 288
            + + KESILDL K++DK +RVKFQGGREG                                 GVLKGFDPL+NLVLD T+EY+RDP DQYKLT+ T
Sbjct:    3 EKKKKESILDLSKYIDKTIRVKFQGGREGKDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDT 98          
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: A0A183IKG7_9BILA (Sm domain-containing protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183IKG7_9BILA)

HSP 1 Score: 82.0 bits (201), Expect = 2.430e-18
Identity = 44/96 (45.83%), Postives = 56/96 (58.33%), Query Frame = 1
Query:    1 DVQSRAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 288
            D + + KES++DL K++DK++RVKFQGGRE +                              G+LKGFD L+NLVLD TVEYLRDP D YKLT+ T
Sbjct:    3 DRERKKKESVIDLSKYIDKKIRVKFQGGREAS------------------------------GILKGFDALLNLVLDNTVEYLRDPDDPYKLTNDT 68          
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: A0A834FIR9_ORYME (U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=Oryzias melastigma TaxID=30732 RepID=A0A834FIR9_ORYME)

HSP 1 Score: 80.9 bits (198), Expect = 1.810e-17
Identity = 49/108 (45.37%), Postives = 60/108 (55.56%), Query Frame = 1
Query:    1 DVQSRAKESILDLEKHVDKRVRVKFQGGREG------------ARSAWPLSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 288
            D + + KESI DL K++DK +RVKFQGGREG             +  W  S          +       P    GVLKGFDPL+NLVLD T+EY+RDP DQ KLT+ T
Sbjct:    3 DKEKKKKESIFDLSKYIDKPIRVKFQGGREGRWLSVGVIGGLMTKYQWRGSIFQLFFFSLTI-------PSLASGVLKGFDPLLNLVLDGTIEYMRDPDDQLKLTEDT 103          
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: F2UFC0_SALR5 (Sm domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UFC0_SALR5)

HSP 1 Score: 78.2 bits (191), Expect = 9.350e-17
Identity = 44/94 (46.81%), Postives = 55/94 (58.51%), Query Frame = 1
Query:    7 QSRAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 288
            Q R ++ ILDLEK+VDK++RVKF GGRE                              VVGVL+G+DPL NLVL +T+E+LRDPSD  K+TD T
Sbjct:    7 QKRERKHILDLEKYVDKKLRVKFSGGRE------------------------------VVGVLQGYDPLSNLVLSDTIEFLRDPSDLSKITDKT 70          
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: UPI000719ADFF (U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719ADFF)

HSP 1 Score: 78.2 bits (191), Expect = 9.350e-17
Identity = 43/94 (45.74%), Postives = 53/94 (56.38%), Query Frame = 1
Query:    1 DVQSRAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTD 282
            D   + KESILDL K++DK++RVKF GGRE +                              GVLKG+DPL+NLVLD T EYLRDP D Y+LT+
Sbjct:    9 DKDRKKKESILDLSKYLDKKIRVKFHGGREAS------------------------------GVLKGYDPLLNLVLDGTTEYLRDPDDPYRLTE 72          
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: A0A819DBB2_9BILA (Hypothetical protein n=5 Tax=Bdelloidea TaxID=44578 RepID=A0A819DBB2_9BILA)

HSP 1 Score: 77.4 bits (189), Expect = 1.600e-16
Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 1
Query:    1 DVQSRAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 288
            D   R KE+I+DL K++DKR+RVKF GGRE +                              GVLKG+D L+NLVLD+T+EYLRDP D+YK+++ T
Sbjct:    3 DSVGRRKENIVDLNKYLDKRIRVKFNGGRECS------------------------------GVLKGYDQLLNLVLDQTIEYLRDPDDEYKISEDT 68          
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Match: A0A815DJF1_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A815DJF1_ADIRI)

HSP 1 Score: 75.9 bits (185), Expect = 3.930e-16
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 1
Query:   13 RAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCVCCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT 288
            R KE+I+DL K++DKR+RVKF GGRE +                              G+LKG+D L+NLVLD+T+EYLRDP D+YK+++ T
Sbjct:    7 RRKENIVDLNKYLDKRIRVKFNGGRECS------------------------------GMLKGYDQLLNLVLDQTIEYLRDPDDEYKISEDT 68          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104948.1060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001BC981514.300e-2154.46U6 snRNA-associated Sm-like protein LSm7 isoform X... [more]
UPI001E1BF4542.450e-2049.52U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=D... [more]
UPI0008F9BC151.120e-1847.87U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=B... [more]
UPI0005293DB41.400e-1848.96U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=M... [more]
A0A183IKG7_9BILA2.430e-1845.83Sm domain-containing protein n=1 Tax=Soboliphyme b... [more]
A0A834FIR9_ORYME1.810e-1745.37U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=O... [more]
F2UFC0_SALR59.350e-1746.81Sm domain-containing protein n=1 Tax=Salpingoeca r... [more]
UPI000719ADFF9.350e-1745.74U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=P... [more]
A0A819DBB2_9BILA1.600e-1643.75Hypothetical protein n=5 Tax=Bdelloidea TaxID=4457... [more]
A0A815DJF1_ADIRI3.930e-1643.48Hypothetical protein n=1 Tax=Adineta ricciae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104948contigM-pyrifera_M_contig104948:3..388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score89.4
Seed ortholog evalue1e-15
Seed eggNOG ortholog185453.XP_006869031.1
Preferred nameLSM7
KEGG koko:K12626
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396,M00397
Hectar predicted targeting categoryother localisation
GOsGO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005688,GO:0005689,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0017069,GO:0017070,GO:0019222,GO:0019439,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034655,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071013,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1990726,GO:1990904
EggNOG free text desc.U6 snRNA-associated Sm-like protein
EggNOG OGs357JK@311790,3A654@33154,3BRX8@33208,3D84X@33213,3JH12@40674,48EPA@7711,49BFZ@7742,KOG1781@1,KOG1781@2759
COG Functional cat.A
Best tax levelAfrotheria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Exons2
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.2314882-CDS-M-pyrifera_M_contig104948:2..371622815557.2314882-CDS-M-pyrifera_M_contig104948:2..37Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104948 3..37 -
1692277462.635765-CDS-M-pyrifera_M_contig104948:2..371692277462.635765-CDS-M-pyrifera_M_contig104948:2..37Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104948 3..37 -
1622815557.2440064-CDS-M-pyrifera_M_contig104948:135..3881622815557.2440064-CDS-M-pyrifera_M_contig104948:135..388Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104948 136..388 -
1692277462.6526277-CDS-M-pyrifera_M_contig104948:135..3881692277462.6526277-CDS-M-pyrifera_M_contig104948:135..388Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104948 136..388 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104948.1060.1prot_M-pyrifera_M_contig104948.1060.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104948 3..388 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104948.1060.1

>prot_M-pyrifera_M_contig104948.1060.1 ID=prot_M-pyrifera_M_contig104948.1060.1|Name=mRNA_M-pyrifera_M_contig104948.1060.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
DVQSRAKESILDLEKHVDKRVRVKFQGGREGARSAWPLSHPHPVVSPPCV
CCPLSGCPDAVVGVLKGFDPLVNLVLDETVEYLRDPSDQYKLTDAT
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mRNA from alignment at M-pyrifera_M_contig104948:3..388-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104948.1060.1 ID=mRNA_M-pyrifera_M_contig104948.1060.1|Name=mRNA_M-pyrifera_M_contig104948.1060.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=386bp|location=Sequence derived from alignment at M-pyrifera_M_contig104948:3..388- (Macrocystis pyrifera P11B4 male)
GATGTGCAGTCGCGGGCAAAGGAGTCCATTTTGGACCTGGAAAAGCACGT GGACAAGCGCGTCCGCGTGAAGTTTCAGGGTGGCCGCGAAGGTGCGCGTT CTGCATGGCCGTTGTCCCACCCACATCCTGTAGTCTCACCCCCGTGCGTT TGCTGTCCTCTTTCTGGATGTCCGGATGCAGTCGTAGGCGTGCTGAAGGG GTTTGACCCGCTGGTGAACTTGGTTCTTGACGAGACTGTGGAGTACTTGC GTGGTGCGTGTGCGAGAGGCTGGGCGTGGGTCTGGGATGTGGGACGTGTG AGGGGGGAGTGCTGACACGTGAGCATCGTTCGTTGCGGGGTGGTGCTGCA GATCCGAGCGACCAGTACAAACTGACAGATGCGACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104948:3..388-

>mRNA_M-pyrifera_M_contig104948.1060.1 ID=mRNA_M-pyrifera_M_contig104948.1060.1|Name=mRNA_M-pyrifera_M_contig104948.1060.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig104948:3..388- (Macrocystis pyrifera P11B4 male)
GATGTGCAGTCGCGGGCAAAGGAGTCCATTTTGGACCTGGAAAAGCACGT
GGACAAGCGCGTCCGCGTGAAGTTTCAGGGTGGCCGCGAAGGTGCGCGTT
CTGCATGGCCGTTGTCCCACCCACATCCTGTAGTCTCACCCCCGTGCGTT
TGCTGTCCTCTTTCTGGATGTCCGGATGCAGTCGTAGGCGTGCTGAAGGG
GTTTGACCCGCTGGTGAACTTGGTTCTTGACGAGACTGTGGAGTACTTGC
GTGGATGTGCAGTCGCGGGCAAAGGAGTCCATTTTGGACCTGGAAAAGCA
CGTGGACAAGCGCGTCCGCGTGAAGTTTCAGGGTGGCCGCGAAGGTGCGC
GTTCTGCATGGCCGTTGTCCCACCCACATCCTGTAGTCTCACCCCCGTGC
GTTTGCTGTCCTCTTTCTGGATGTCCGGATGCAGTCGTAGGCGTGCTGAA
GGGGTTTGACCCGCTGGTGAACTTGGTTCTTGACGAGACTGTGGAGTACT
TGCGTGATCCGAGCGACCAGTACAAACTGACAGATGCGACGATCCGAGCG
ACCAGTACAAACTGACAGATGCGACG
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