prot_M-pyrifera_M_contig104844.1038.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig104844.1038.1
Unique Nameprot_M-pyrifera_M_contig104844.1038.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length117
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig104844.1038.1 vs. uniprot
Match: A0A8J2WVC9_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WVC9_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.800e-12
Identity = 40/107 (37.38%), Postives = 57/107 (53.27%), Query Frame = 0 
Query:   11 SRQMLHNASGEPVRQEEIDTDSDSATEAEGDAWRVRKEVQTLVCAEDTDPKEAQFIALWNVFASTYKMYADYVVPRALLAFARAHGREIVRRGLRQALLCHAVVLWE 117
            +RQ  H  +G+P+    + +  DS  E + + WR+R+    L   ED  P E  F+ LWN +     + AD  VPRA++AFARAH  EI  + LR   L H   LW+
Sbjct:  448 TRQYYHARTGQPIHPRLLQSGYDSDDEVD-EGWRLRRAEVLLDEFEDVTPPEKAFMKLWNRWIFARPIQADRDVPRAVVAFARAHAAEIAGQNLRHNFLLHLFHLWD 553
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104844.1038.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8J2WVC9_9STRA4.800e-1237.38Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019135Polycomb protein, VEFS-BoxPFAMPF09733VEFS-Boxcoord: 10..117
e-value: 8.3E-21
score: 74.2
NoneNo IPR availablePANTHERPTHR22597:SF0POLYCOMB PROTEIN SUZ12coord: 8..116
NoneNo IPR availablePANTHERPTHR22597POLYCOMB GROUP PROTEINcoord: 8..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104844contigM-pyrifera_M_contig104844:5..355 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104844.1038.1mRNA_M-pyrifera_M_contig104844.1038.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig104844 5..370 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig104844.1038.1 ID=prot_M-pyrifera_M_contig104844.1038.1|Name=mRNA_M-pyrifera_M_contig104844.1038.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
MERDSDRVHLSRQMLHNASGEPVRQEEIDTDSDSATEAEGDAWRVRKEVQ
TLVCAEDTDPKEAQFIALWNVFASTYKMYADYVVPRALLAFARAHGREIV
RRGLRQALLCHAVVLWE
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019135Polycomb_protein_VEFS-Box