mRNA_M-pyrifera_M_contig104844.1038.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig104844.1038.1
Unique Name	mRNA_M-pyrifera_M_contig104844.1038.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

[Close]

BLAST of mRNA_M-pyrifera_M_contig104844.1038.1 vs. uniprot
Match: A0A8J2WVC9_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WVC9_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.250e-12
Identity = 40/107 (37.38%), Postives = 57/107 (53.27%), Query Frame = 1

Query:   46 SRQMLHNASGEPVRQEEIDTDSDSATEAEGDAWRVRKEVQTLVCAEDTDPKEAQFIALWNVFASTYKMYADYVVPRALLAFARAHGREIVRRGLRQALLCHAVVLWE 366
            +RQ  H  +G+P+    + +  DS  E + + WR+R+    L   ED  P E  F+ LWN +     + AD  VPRA++AFARAH  EI  + LR   L H   LW+
Sbjct:  448 TRQYYHARTGQPIHPRLLQSGYDSDDEVD-EGWRLRRAEVLLDEFEDVTPPEKAFMKLWNRWIFARPIQADRDVPRAVVAFARAHAAEIAGQNLRHNFLLHLFHLWD 553

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig104844.1038.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig104844.1038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A8J2WVC9_9STRA	2.250e-12	37.38	Hypothetical protein n=3 Tax=Pelagomonas calceolat...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig104844	contig	M-pyrifera_M_contig104844:5..370 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	67.0
Seed ortholog evalue	6.6e-09
Seed eggNOG ortholog	42099.EPrPV00000015616
Preferred name	SUZ12
KEGG ko	ko:K11463
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000122,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0000803,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0001739,GO:0001817,GO:0001818,GO:0001932,GO:0001933,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003700,GO:0003723,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005677,GO:0005694,GO:0005720,GO:0005730,GO:0006139,GO:0006325,GO:0006342,GO:0006349,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008168,GO:0008213,GO:0008276,GO:0008284,GO:0008285,GO:0009266,GO:0009409,GO:0009628,GO:0009791,GO:0009889,GO:0009890,GO:0009892,GO:0009908,GO:0009909,GO:0009910,GO:0009966,GO:0009968,GO:0009987,GO:0010048,GO:0010468,GO:0010556,GO:0010558,GO:0010563,GO:0010564,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010948,GO:0016043,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016571,GO:0016574,GO:0016586,GO:0016604,GO:0016740,GO:0016741,GO:0017053,GO:0018022,GO:0018193,GO:0018205,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0022008,GO:0022414,GO:0023051,GO:0023057,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0031490,GO:0031519,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032269,GO:0032446,GO:0032501,GO:0032502,GO:0032642,GO:0032682,GO:0032991,GO:0032993,GO:0034641,GO:0034708,GO:0034968,GO:0035064,GO:0035097,GO:0035098,GO:0036211,GO:0040029,GO:0042054,GO:0042127,GO:0042325,GO:0042326,GO:0042393,GO:0042509,GO:0042532,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045595,GO:0045596,GO:0045786,GO:0045814,GO:0045892,GO:0045934,GO:0045936,GO:0046425,GO:0046426,GO:0046483,GO:0048367,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048586,GO:0048608,GO:0048731,GO:0048831,GO:0048856,GO:0048869,GO:0050678,GO:0050680,GO:0050730,GO:0050732,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051174,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051276,GO:0051726,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0070316,GO:0070317,GO:0070603,GO:0070647,GO:0070734,GO:0071514,GO:0071704,GO:0071840,GO:0080090,GO:0090567,GO:0090568,GO:0097159,GO:0098532,GO:0140030,GO:0140034,GO:0140096,GO:0140110,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903506,GO:1903507,GO:1904892,GO:1904893,GO:1904949,GO:1990234,GO:1990837,GO:1990841,GO:2000026,GO:2000028,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2001141,GO:2001228,GO:2001229
EggNOG free text desc.	Polycomb protein. Source PGD
EggNOG OGs	1MA8Y@121069,KOG2350@1,KOG2350@2759
COG Functional cat.	S
Best tax level	Pythiales
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03036
Exons	1
Model size	366
Cds size	351
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815556.0173514-CDS-M-pyrifera_M_contig104844:4..355	1622815556.0173514-CDS-M-pyrifera_M_contig104844:4..355	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig104844 5..355 -
1692277462.081947-CDS-M-pyrifera_M_contig104844:4..355	1692277462.081947-CDS-M-pyrifera_M_contig104844:4..355	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig104844 5..355 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815556.027881-UTR-M-pyrifera_M_contig104844:355..370	1622815556.027881-UTR-M-pyrifera_M_contig104844:355..370	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig104844 356..370 -
1692277462.0958087-UTR-M-pyrifera_M_contig104844:355..370	1692277462.0958087-UTR-M-pyrifera_M_contig104844:355..370	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig104844 356..370 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig104844.1038.1	prot_M-pyrifera_M_contig104844.1038.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig104844 5..355 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig104844:5..370-
coding sequence from alignment at M-pyrifera_M_contig104844:5..370-

protein sequence of mRNA_M-pyrifera_M_contig104844.1038.1

>prot_M-pyrifera_M_contig104844.1038.1 ID=prot_M-pyrifera_M_contig104844.1038.1|Name=mRNA_M-pyrifera_M_contig104844.1038.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
MERDSDRVHLSRQMLHNASGEPVRQEEIDTDSDSATEAEGDAWRVRKEVQ
TLVCAEDTDPKEAQFIALWNVFASTYKMYADYVVPRALLAFARAHGREIV
RRGLRQALLCHAVVLWE

mRNA from alignment at M-pyrifera_M_contig104844:5..370-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig104844.1038.1 ID=mRNA_M-pyrifera_M_contig104844.1038.1|Name=mRNA_M-pyrifera_M_contig104844.1038.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig104844:5..370- (Macrocystis pyrifera P11B4 male)
GAATTGAGTGTTGCCATGGAACGGGATTCAGATCGTGTGCATTTGTCTCG
TCAAATGCTGCATAATGCTTCTGGTGAACCTGTTCGACAAGAAGAGATTG
ACACAGATTCTGATTCTGCTACAGAGGCAGAAGGGGATGCATGGCGAGTG
AGGAAAGAAGTGCAGACATTGGTATGTGCAGAAGACACTGATCCCAAAGA
GGCACAATTCATTGCGCTTTGGAATGTGTTTGCTTCAACATACAAAATGT
ATGCAGACTATGTCGTGCCTCGTGCTCTTCTTGCGTTTGCACGTGCACAT
GGAAGAGAAATTGTACGTCGTGGATTGCGACAAGCTCTCTTATGTCATGC
AGTAGTGTTGTGGGAA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig104844:5..370-

>mRNA_M-pyrifera_M_contig104844.1038.1 ID=mRNA_M-pyrifera_M_contig104844.1038.1|Name=mRNA_M-pyrifera_M_contig104844.1038.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig104844:5..370- (Macrocystis pyrifera P11B4 male)
ATGGAACGGGATTCAGATCGTGTGCATTTGTCTCGTCAAATGCTGCATAA
TGCTTCTGGTGAACCTGTTCGACAAGAAGAGATTGACACAGATTCTGATT
CTGCTACAGAGGCAGAAGGGGATGCATGGCGAGTGAGGAAAGAAGTGCAG
ACATTGGTATGTGCAGAAGACACTGATCCCAAAGAGGCACAATTCATTGC
GCTTTGGAATGTGTTTGCTTCAACATACAAAATGTATGCAGACTATGTCG
TGCCTCGTGCTCTTCTTGCGTTTGCACGTGCACATGGAAGAGAAATTGTA
CGTCGTGGATTGCGACAAGCTCTCTTATGTCATGCAGTAGTGTTGTGGGA
AATGGAACGGGATTCAGATCGTGTGCATTTGTCTCGTCAAATGCTGCATA
ATGCTTCTGGTGAACCTGTTCGACAAGAAGAGATTGACACAGATTCTGAT
TCTGCTACAGAGGCAGAAGGGGATGCATGGCGAGTGAGGAAAGAAGTGCA
GACATTGGTATGTGCAGAAGACACTGATCCCAAAGAGGCACAATTCATTG
CGCTTTGGAATGTGTTTGCTTCAACATACAAAATGTATGCAGACTATGTC
GTGCCTCGTGCTCTTCTTGCGTTTGCACGTGCACATGGAAGAGAAATTGT
ACGTCGTGGATTGCGACAAGCTCTCTTATGTCATGCAGTAGTGTTGTGGG
AA