prot_M-pyrifera_M_contig104833.1032.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig104833.1032.1
Unique Nameprot_M-pyrifera_M_contig104833.1032.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length177
Homology
BLAST of mRNA_M-pyrifera_M_contig104833.1032.1 vs. uniprot
Match: A0A7X6ARD4_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6ARD4_9ACTN)

HSP 1 Score: 232 bits (592), Expect = 2.360e-75
Identity = 114/169 (67.46%), Postives = 137/169 (81.07%), Query Frame = 0
Query:    9 VGTPEVRAIGTADAAFARGDDDALRQAFDAHGRLVYTFCARALGSERANDVTQEVFLSAWKARDRFDPAKGNLAAWLTGIAKNRIIDAVRAEKRHSDRRAPETTDDLPTEPETESLGDKMLVAEALRTLPERARMVLTLHYFEDLTHPQIVERTQLPLGTVKSDIRRGL 177
            + T ++RA    + AF  GD+DALR+ +DAHG LVYTFCAR+L  +RA+DVTQEVFLSAW+ARDRFDPA+G LA WL GIAKNR+ID VR+E+RHSDRRA +   +LP   + + LGD+MLV EALR+LPER R VLTL +FEDLTHPQI ERT LP+GTVKSDIRRGL
Sbjct:    1 MSTADLRAPDDVELAFVAGDEDALRRVYDAHGGLVYTFCARSLDHDRAHDVTQEVFLSAWRARDRFDPARGTLAGWLMGIAKNRVIDNVRSERRHSDRRADDDGAELPVRADVDDLGDRMLVGEALRSLPERPRRVLTLAFFEDLTHPQIAERTGLPIGTVKSDIRRGL 169          
BLAST of mRNA_M-pyrifera_M_contig104833.1032.1 vs. uniprot
Match: A0A2D8LQB0_9ACTN (Uncharacterized protein n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8LQB0_9ACTN)

HSP 1 Score: 229 bits (583), Expect = 1.040e-73
Identity = 116/174 (66.67%), Postives = 136/174 (78.16%), Query Frame = 0
Query:    4 RYPVLVGTPEVRAIGTADAAFARGDDDALRQAFDAHGRLVYTFCARALGSERANDVTQEVFLSAWKARDRFDPAKGNLAAWLTGIAKNRIIDAVRAEKRHSDRRAPETTDDLPTEPETESLGDKMLVAEALRTLPERARMVLTLHYFEDLTHPQIVERTQLPLGTVKSDIRRGL 177
            RY   V T EV      + AF RGD+DALR A+D  GRLVY+FCAR+L  ERA DVTQEVFLSAW+AR+R++P KG L AWL GIA+NRIID VR+EKRHSDRRA E T +L TE E +++ DKML+A+ALR LP+RAR V+TL Y  DLTHPQI ERT +PLGTVKSDIRRGL
Sbjct:   15 RYARNVSTAEVPVGHDVETAFVRGDEDALRLAYDEFGRLVYSFCARSLDPERAKDVTQEVFLSAWRARERYNPEKGRLGAWLMGIARNRIIDNVRSEKRHSDRRADEDTVELSTEAEVDAMSDKMLIADALRELPDRARRVITLAYLHDLTHPQIAERTNIPLGTVKSDIRRGL 188          
BLAST of mRNA_M-pyrifera_M_contig104833.1032.1 vs. uniprot
Match: A0A6N8Y7J4_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6N8Y7J4_9ACTN)

HSP 1 Score: 208 bits (530), Expect = 1.570e-65
Identity = 104/176 (59.09%), Postives = 129/176 (73.30%), Query Frame = 0
Query:    2 ALRYPVLVGTPEVRAIGTADAAFARGDDDALRQAFDAHGRLVYTFCARALGSERANDVTQEVFLSAWKARDRFDPAKGNLAAWLTGIAKNRIIDAVRAEKRHSDRRAPETTDDLPTEPETESLGDKMLVAEALRTLPERARMVLTLHYFEDLTHPQIVERTQLPLGTVKSDIRRGL 177
            A RY   V +       + + AFARGDD+ALR A++ HG LVYTFC R L   RA DVTQEVF+SAWK R R++PAKG+LA WL  IAKNR+ID VRAE+RHS+RRA     D+P E + E +GD++++AEALR L +RAR V+ +HYF+DLT  QI ERT  PLGTVKSD+RRGL
Sbjct:   22 APRYSPRVASAGGDTFESVEKAFARGDDNALRAAYEHHGSLVYTFCRRTLDEARAKDVTQEVFISAWKGRHRYEPAKGSLAGWLIAIAKNRVIDNVRAEQRHSERRADNDPADVPVEADVERIGDRLMIAEALRCLSDRARQVVAMHYFDDLTLRQIAERTSQPLGTVKSDLRRGL 197          
BLAST of mRNA_M-pyrifera_M_contig104833.1032.1 vs. uniprot
Match: A0A6L7NG63_9ACTN (RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L7NG63_9ACTN)

HSP 1 Score: 205 bits (521), Expect = 6.450e-64
Identity = 98/169 (57.99%), Postives = 127/169 (75.15%), Query Frame = 0
Query:    9 VGTPEVRAIGTADAAFARGDDDALRQAFDAHGRLVYTFCARALGSERANDVTQEVFLSAWKARDRFDPAKGNLAAWLTGIAKNRIIDAVRAEKRHSDRRAPETTDDLPTEPETESLGDKMLVAEALRTLPERARMVLTLHYFEDLTHPQIVERTQLPLGTVKSDIRRGL 177
            V  PE  ++   + AFARG++ ALR A+  HG L+YT+C R L  +RANDVTQEVF+SAW++R RFDPAKG L  WL  I +NRIID VRAE+RHS+RR      +LPTE E +++G+KM++A+ALR+LP+R R V+ LHYF+DLT  QI ER  +PLGTVKS +RRGL
Sbjct:   47 VPNPEPPSVHNIEKAFARGEEQALRAAYKQHGNLIYTYCRRTLDEDRANDVTQEVFISAWRSRHRFDPAKGTLVGWLFSITRNRIIDNVRAEQRHSERRVNLDATELPTESEIDTIGNKMMIADALRSLPDRVRQVIMLHYFDDLTQGQIAERMSIPLGTVKSILRRGL 215          
BLAST of mRNA_M-pyrifera_M_contig104833.1032.1 vs. uniprot
Match: A0A7X4HZW0_9BACT (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7X4HZW0_9BACT)

HSP 1 Score: 204 bits (519), Expect = 1.380e-63
Identity = 106/175 (60.57%), Postives = 130/175 (74.29%), Query Frame = 0
Query:    4 RYPVLVGTPEVRAIGTADAAFARGDDDALRQAFDAHGRLVYTFCARALGSERANDVTQEVFLSAWKARDRFDPAKGNLAAWLTGIAKNRIIDAVRAEKRHSDRRAPETT-DDLPTEPETESLGDKMLVAEALRTLPERARMVLTLHYFEDLTHPQIVERTQLPLGTVKSDIRRGL 177
            RY  +V + E   I + + AFARGDDDALR A+  HG LVYTFC R L   RA DVTQEVF+SAWK+R R++PAKG+LA WL  IA+NRIID VRAE+R+SDRRA     DD+    + + + D++L+AEALR L +RAR V+T+HYFEDLT  QI E TQ PLGTVKSD+RRGL
Sbjct:   43 RYSQIVASFESEPIESIEKAFARGDDDALRVAYKHHGSLVYTFCHRTLDESRAKDVTQEVFISAWKSRGRYEPAKGSLAGWLIAIARNRIIDNVRAEQRYSDRRAGGVAPDDVHVGSQVDRIADRLLIAEALRCLSDRARQVVTMHYFEDLTLRQIAEATQQPLGTVKSDLRRGL 217          
BLAST of mRNA_M-pyrifera_M_contig104833.1032.1 vs. uniprot
Match: A0A6G2K6D1_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6G2K6D1_9ACTN)

HSP 1 Score: 201 bits (511), Expect = 1.990e-62
Identity = 99/174 (56.90%), Postives = 127/174 (72.99%), Query Frame = 0
Query:    4 RYPVLVGTPEVRAIGTADAAFARGDDDALRQAFDAHGRLVYTFCARALGSERANDVTQEVFLSAWKARDRFDPAKGNLAAWLTGIAKNRIIDAVRAEKRHSDRRAPETTDDLPTEPETESLGDKMLVAEALRTLPERARMVLTLHYFEDLTHPQIVERTQLPLGTVKSDIRRGL 177
            RY + V      A  + + AF+RGDD AL  A+ A+G LVYTFC R L   RA DVTQEVF+SAWK   R++PAKG LA WL  IA+NRIID VR+E+RHSDRRA     ++P E + E +GD++++AEALR LP+RAR V+ +HYF+DLTH +I +R  +PLGTVKSD+RRGL
Sbjct:   40 RYHLDVPQTASEASPSVEEAFSRGDDSALSAAYRAYGGLVYTFCRRTLDEARAKDVTQEVFVSAWKGCRRYEPAKGTLAGWLIAIARNRIIDNVRSERRHSDRRAGGDIAEIPVEAQVERIGDRLMIAEALRCLPDRARRVIAMHYFDDLTHQEIAQRMSMPLGTVKSDLRRGL 213          
BLAST of mRNA_M-pyrifera_M_contig104833.1032.1 vs. uniprot
Match: A0A7K2ED11_9ACTN (Sigma-70 family RNA polymerase sigma factor n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2ED11_9ACTN)

HSP 1 Score: 199 bits (505), Expect = 1.780e-61
Identity = 96/169 (56.80%), Postives = 127/169 (75.15%), Query Frame = 0
Query:    9 VGTPEVRAIGTADAAFARGDDDALRQAFDAHGRLVYTFCARALGSERANDVTQEVFLSAWKARDRFDPAKGNLAAWLTGIAKNRIIDAVRAEKRHSDRRAPETTDDLPTEPETESLGDKMLVAEALRTLPERARMVLTLHYFEDLTHPQIVERTQLPLGTVKSDIRRGL 177
            V + E   I + + AFARG++ ALR A+  +G LVYTFC R L   RA DVTQEVF+SAW++R+R++PAKG LA WL  I KNRIID VR+E+RH+ RR+ +   ++P   + E +GD++++AEALR L +RAR V+TLHYF+DLTH QI ER  +PLGTVKSD+RRGL
Sbjct:   48 VRSSESEPIDSVEKAFARGEEHALRAAYVQYGSLVYTFCRRTLDESRAKDVTQEVFISAWRSRERYEPAKGTLAGWLIAITKNRIIDNVRSEQRHAGRRSDDDPAEIPIAADVEQVGDRLMIAEALRCLSDRARRVVTLHYFDDLTHRQIAERMSVPLGTVKSDLRRGL 216          
BLAST of mRNA_M-pyrifera_M_contig104833.1032.1 vs. uniprot
Match: A0A7K2BCL0_9ACTN (Sigma-70 family RNA polymerase sigma factor n=3 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7K2BCL0_9ACTN)

HSP 1 Score: 199 bits (505), Expect = 3.610e-61
Identity = 100/176 (56.82%), Postives = 122/176 (69.32%), Query Frame = 0
Query:    2 ALRYPVLVGTPEVRAIGTADAAFARGDDDALRQAFDAHGRLVYTFCARALGSERANDVTQEVFLSAWKARDRFDPAKGNLAAWLTGIAKNRIIDAVRAEKRHSDRRAPETTDDLPTEPETESLGDKMLVAEALRTLPERARMVLTLHYFEDLTHPQIVERTQLPLGTVKSDIRRGL 177
            ALRY ++V      A    D AFARG+D +L   +  +G LVYT C R L   RA DV QEVF+SAWK  +RFDPAKGNLAAWL  I KNRIID +RA KRHSDRR+     D+P++   E + +++++AEALR LPE  R V+T+HYF+ LTHPQI E T LPLGTVKS I RGL
Sbjct:   64 ALRYHLVVQRSADEATDGVDQAFARGEDGSLEAVYRRYGDLVYTLCRRTLDESRACDVAQEVFISAWKGHERFDPAKGNLAAWLVTITKNRIIDNIRAAKRHSDRRSGADLADMPSDAGIEQIAERLMIAEALRRLPEATRRVITMHYFDGLTHPQIAETTSLPLGTVKSTIHRGL 239          
BLAST of mRNA_M-pyrifera_M_contig104833.1032.1 vs. uniprot
Match: A0A7K2A7M5_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2A7M5_9ACTN)

HSP 1 Score: 199 bits (507), Expect = 2.320e-60
Identity = 103/175 (58.86%), Postives = 127/175 (72.57%), Query Frame = 0
Query:    4 RYPVLVGTPEVRAIGTADAAFARGDDDALRQAFDAHGRLVYTFCARALGSERANDVTQEVFLSAWKARDRFDPAKGNLAAWLTGIAKNRIIDAVRAEKRHSDRRAPETT-DDLPTEPETESLGDKMLVAEALRTLPERARMVLTLHYFEDLTHPQIVERTQLPLGTVKSDIRRGL 177
            RY   V + E   I + + AFARGDD ALR A+  HG LVYTFC R L   RA DVTQEVF+SAWK+R R++PAKG+LA WL  IA+NR+ID VRAE+RHS+RRA     DD+    + + + D++L+ EALR L +RAR V+T+HYFEDLT  QI E TQ PLGTVKSD+RRGL
Sbjct:  153 RYSPSVASFESEPIESIEKAFARGDDGALRVAYKHHGSLVYTFCRRTLDESRAKDVTQEVFISAWKSRARYEPAKGSLAGWLIAIARNRVIDNVRAEQRHSERRASGVAPDDVHVGSQVDRIADRLLIGEALRCLSDRARQVITMHYFEDLTLRQIAEATQQPLGTVKSDLRRGL 327          
BLAST of mRNA_M-pyrifera_M_contig104833.1032.1 vs. uniprot
Match: A0A4R7HYY3_9ACTN (RNA polymerase sigma-70 factor (ECF subfamily) n=2 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7HYY3_9ACTN)

HSP 1 Score: 194 bits (492), Expect = 8.340e-60
Identity = 100/160 (62.50%), Postives = 120/160 (75.00%), Query Frame = 0
Query:   21 DAAFARGDDDALRQAFDAHGRLVYTFCARALGSERANDVTQEVFLSAWKARDRFDPAKGNLAAWLTGIAKNRIIDAVRAEKRHSDRRAPETT---DDLPTEPETESLGDKMLVAEALRTLPERARMVLTLHYFEDLTHPQIVERTQLPLGTVKSDIRRGL 177
            DAAFA G  D LR  +DAHG+LVY  C RAL ++ ANDVTQEVF+SAWK R++FDPAKGNL  WL GI K RIID +R+E+RH+DRRA E T    D+ +EP  + L DKMLVA  L  LP+R+R V+ + Y +DLTH QI E+T LPLGTVKSDIRRGL
Sbjct:   36 DAAFAAGHAD-LRAVYDAHGKLVYNLCRRALDADTANDVTQEVFVSAWKGREQFDPAKGNLGQWLVGITKRRIIDHLRSERRHADRRADEDTYIQADVHSEPTVDRLADKMLVANVLEQLPDRSRTVIHMAYVDDLTHQQIAEQTGLPLGTVKSDIRRGL 194          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104833.1032.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X6ARD4_9ACTN2.360e-7567.46Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A2D8LQB0_9ACTN1.040e-7366.67Uncharacterized protein n=5 Tax=Acidimicrobiaceae ... [more]
A0A6N8Y7J4_9ACTN1.570e-6559.09Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A6L7NG63_9ACTN6.450e-6457.99RNA polymerase sigma factor n=1 Tax=Acidimicrobiia... [more]
A0A7X4HZW0_9BACT1.380e-6360.57Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A6G2K6D1_9ACTN1.990e-6256.90Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A7K2ED11_9ACTN1.780e-6156.80Sigma-70 family RNA polymerase sigma factor n=2 Ta... [more]
A0A7K2BCL0_9ACTN3.610e-6156.82Sigma-70 family RNA polymerase sigma factor n=3 Ta... [more]
A0A7K2A7M5_9ACTN2.320e-6058.86Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A4R7HYY3_9ACTN8.340e-6062.50RNA polymerase sigma-70 factor (ECF subfamily) n=2... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013249RNA polymerase sigma factor 70, region 4 type 2PFAMPF08281Sigma70_r4_2coord: 129..177
e-value: 3.2E-13
score: 49.1
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 95..177
e-value: 2.1E-16
score: 61.5
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 30..176
e-value: 6.4E-28
score: 95.4
NoneNo IPR availableGENE3D1.10.1740.10coord: 20..94
e-value: 3.7E-22
score: 80.1
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 36..102
e-value: 5.7E-20
score: 70.9
IPR039425RNA polymerase sigma-70 likePANTHERPTHR43133FAMILY NOT NAMEDcoord: 21..177
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 23..116
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 127..177

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104833contigM-pyrifera_M_contig104833:4..534 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104833.1032.1mRNA_M-pyrifera_M_contig104833.1032.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig104833 4..534 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig104833.1032.1 ID=prot_M-pyrifera_M_contig104833.1032.1|Name=mRNA_M-pyrifera_M_contig104833.1032.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=177bp
PALRYPVLVGTPEVRAIGTADAAFARGDDDALRQAFDAHGRLVYTFCARA
LGSERANDVTQEVFLSAWKARDRFDPAKGNLAAWLTGIAKNRIIDAVRAE
KRHSDRRAPETTDDLPTEPETESLGDKMLVAEALRTLPERARMVLTLHYF
EDLTHPQIVERTQLPLGTVKSDIRRGL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013249RNA_pol_sigma70_r4_t2
IPR036388WH-like_DNA-bd_sf
IPR014284RNA_pol_sigma-70_dom
IPR007627RNA_pol_sigma70_r2
IPR039425RNA_pol_sigma-70
IPR013325RNA_pol_sigma_r2
IPR013324RNA_pol_sigma_r3/r4-like