mRNA_M-pyrifera_M_contig104833.1032.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig104833.1032.1 vs. uniprot
Match: A0A7X6ARD4_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6ARD4_9ACTN) HSP 1 Score: 232 bits (592), Expect = 2.360e-75 Identity = 114/169 (67.46%), Postives = 137/169 (81.07%), Query Frame = 1 Query: 25 VGTPEVRAIGTADAAFARGDDDALRQAFDAHGRLVYTFCARALGSERANDVTQEVFLSAWKARDRFDPAKGNLAAWLTGIAKNRIIDAVRAEKRHSDRRAPETTDDLPTEPETESLGDKMLVAEALRTLPERARMVLTLHYFEDLTHPQIVERTQLPLGTVKSDIRRGL 531 + T ++RA + AF GD+DALR+ +DAHG LVYTFCAR+L +RA+DVTQEVFLSAW+ARDRFDPA+G LA WL GIAKNR+ID VR+E+RHSDRRA + +LP + + LGD+MLV EALR+LPER R VLTL +FEDLTHPQI ERT LP+GTVKSDIRRGL Sbjct: 1 MSTADLRAPDDVELAFVAGDEDALRRVYDAHGGLVYTFCARSLDHDRAHDVTQEVFLSAWRARDRFDPARGTLAGWLMGIAKNRVIDNVRSERRHSDRRADDDGAELPVRADVDDLGDRMLVGEALRSLPERPRRVLTLAFFEDLTHPQIAERTGLPIGTVKSDIRRGL 169
BLAST of mRNA_M-pyrifera_M_contig104833.1032.1 vs. uniprot
Match: A0A2D8LQB0_9ACTN (Uncharacterized protein n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8LQB0_9ACTN) HSP 1 Score: 229 bits (583), Expect = 1.040e-73 Identity = 116/174 (66.67%), Postives = 136/174 (78.16%), Query Frame = 1 Query: 10 RYPVLVGTPEVRAIGTADAAFARGDDDALRQAFDAHGRLVYTFCARALGSERANDVTQEVFLSAWKARDRFDPAKGNLAAWLTGIAKNRIIDAVRAEKRHSDRRAPETTDDLPTEPETESLGDKMLVAEALRTLPERARMVLTLHYFEDLTHPQIVERTQLPLGTVKSDIRRGL 531 RY V T EV + AF RGD+DALR A+D GRLVY+FCAR+L ERA DVTQEVFLSAW+AR+R++P KG L AWL GIA+NRIID VR+EKRHSDRRA E T +L TE E +++ DKML+A+ALR LP+RAR V+TL Y DLTHPQI ERT +PLGTVKSDIRRGL Sbjct: 15 RYARNVSTAEVPVGHDVETAFVRGDEDALRLAYDEFGRLVYSFCARSLDPERAKDVTQEVFLSAWRARERYNPEKGRLGAWLMGIARNRIIDNVRSEKRHSDRRADEDTVELSTEAEVDAMSDKMLIADALRELPDRARRVITLAYLHDLTHPQIAERTNIPLGTVKSDIRRGL 188
BLAST of mRNA_M-pyrifera_M_contig104833.1032.1 vs. uniprot
Match: A0A6N8Y7J4_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6N8Y7J4_9ACTN) HSP 1 Score: 208 bits (530), Expect = 1.570e-65 Identity = 104/176 (59.09%), Postives = 129/176 (73.30%), Query Frame = 1 Query: 4 ALRYPVLVGTPEVRAIGTADAAFARGDDDALRQAFDAHGRLVYTFCARALGSERANDVTQEVFLSAWKARDRFDPAKGNLAAWLTGIAKNRIIDAVRAEKRHSDRRAPETTDDLPTEPETESLGDKMLVAEALRTLPERARMVLTLHYFEDLTHPQIVERTQLPLGTVKSDIRRGL 531 A RY V + + + AFARGDD+ALR A++ HG LVYTFC R L RA DVTQEVF+SAWK R R++PAKG+LA WL IAKNR+ID VRAE+RHS+RRA D+P E + E +GD++++AEALR L +RAR V+ +HYF+DLT QI ERT PLGTVKSD+RRGL Sbjct: 22 APRYSPRVASAGGDTFESVEKAFARGDDNALRAAYEHHGSLVYTFCRRTLDEARAKDVTQEVFISAWKGRHRYEPAKGSLAGWLIAIAKNRVIDNVRAEQRHSERRADNDPADVPVEADVERIGDRLMIAEALRCLSDRARQVVAMHYFDDLTLRQIAERTSQPLGTVKSDLRRGL 197
BLAST of mRNA_M-pyrifera_M_contig104833.1032.1 vs. uniprot
Match: A0A6L7NG63_9ACTN (RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L7NG63_9ACTN) HSP 1 Score: 205 bits (521), Expect = 6.450e-64 Identity = 98/169 (57.99%), Postives = 127/169 (75.15%), Query Frame = 1 Query: 25 VGTPEVRAIGTADAAFARGDDDALRQAFDAHGRLVYTFCARALGSERANDVTQEVFLSAWKARDRFDPAKGNLAAWLTGIAKNRIIDAVRAEKRHSDRRAPETTDDLPTEPETESLGDKMLVAEALRTLPERARMVLTLHYFEDLTHPQIVERTQLPLGTVKSDIRRGL 531 V PE ++ + AFARG++ ALR A+ HG L+YT+C R L +RANDVTQEVF+SAW++R RFDPAKG L WL I +NRIID VRAE+RHS+RR +LPTE E +++G+KM++A+ALR+LP+R R V+ LHYF+DLT QI ER +PLGTVKS +RRGL Sbjct: 47 VPNPEPPSVHNIEKAFARGEEQALRAAYKQHGNLIYTYCRRTLDEDRANDVTQEVFISAWRSRHRFDPAKGTLVGWLFSITRNRIIDNVRAEQRHSERRVNLDATELPTESEIDTIGNKMMIADALRSLPDRVRQVIMLHYFDDLTQGQIAERMSIPLGTVKSILRRGL 215
BLAST of mRNA_M-pyrifera_M_contig104833.1032.1 vs. uniprot
Match: A0A7X4HZW0_9BACT (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7X4HZW0_9BACT) HSP 1 Score: 204 bits (519), Expect = 1.380e-63 Identity = 106/175 (60.57%), Postives = 130/175 (74.29%), Query Frame = 1 Query: 10 RYPVLVGTPEVRAIGTADAAFARGDDDALRQAFDAHGRLVYTFCARALGSERANDVTQEVFLSAWKARDRFDPAKGNLAAWLTGIAKNRIIDAVRAEKRHSDRRAPETT-DDLPTEPETESLGDKMLVAEALRTLPERARMVLTLHYFEDLTHPQIVERTQLPLGTVKSDIRRGL 531 RY +V + E I + + AFARGDDDALR A+ HG LVYTFC R L RA DVTQEVF+SAWK+R R++PAKG+LA WL IA+NRIID VRAE+R+SDRRA DD+ + + + D++L+AEALR L +RAR V+T+HYFEDLT QI E TQ PLGTVKSD+RRGL Sbjct: 43 RYSQIVASFESEPIESIEKAFARGDDDALRVAYKHHGSLVYTFCHRTLDESRAKDVTQEVFISAWKSRGRYEPAKGSLAGWLIAIARNRIIDNVRAEQRYSDRRAGGVAPDDVHVGSQVDRIADRLLIAEALRCLSDRARQVVTMHYFEDLTLRQIAEATQQPLGTVKSDLRRGL 217
BLAST of mRNA_M-pyrifera_M_contig104833.1032.1 vs. uniprot
Match: A0A6G2K6D1_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6G2K6D1_9ACTN) HSP 1 Score: 201 bits (511), Expect = 1.990e-62 Identity = 99/174 (56.90%), Postives = 127/174 (72.99%), Query Frame = 1 Query: 10 RYPVLVGTPEVRAIGTADAAFARGDDDALRQAFDAHGRLVYTFCARALGSERANDVTQEVFLSAWKARDRFDPAKGNLAAWLTGIAKNRIIDAVRAEKRHSDRRAPETTDDLPTEPETESLGDKMLVAEALRTLPERARMVLTLHYFEDLTHPQIVERTQLPLGTVKSDIRRGL 531 RY + V A + + AF+RGDD AL A+ A+G LVYTFC R L RA DVTQEVF+SAWK R++PAKG LA WL IA+NRIID VR+E+RHSDRRA ++P E + E +GD++++AEALR LP+RAR V+ +HYF+DLTH +I +R +PLGTVKSD+RRGL Sbjct: 40 RYHLDVPQTASEASPSVEEAFSRGDDSALSAAYRAYGGLVYTFCRRTLDEARAKDVTQEVFVSAWKGCRRYEPAKGTLAGWLIAIARNRIIDNVRSERRHSDRRAGGDIAEIPVEAQVERIGDRLMIAEALRCLPDRARRVIAMHYFDDLTHQEIAQRMSMPLGTVKSDLRRGL 213
BLAST of mRNA_M-pyrifera_M_contig104833.1032.1 vs. uniprot
Match: A0A7K2ED11_9ACTN (Sigma-70 family RNA polymerase sigma factor n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2ED11_9ACTN) HSP 1 Score: 199 bits (505), Expect = 1.780e-61 Identity = 96/169 (56.80%), Postives = 127/169 (75.15%), Query Frame = 1 Query: 25 VGTPEVRAIGTADAAFARGDDDALRQAFDAHGRLVYTFCARALGSERANDVTQEVFLSAWKARDRFDPAKGNLAAWLTGIAKNRIIDAVRAEKRHSDRRAPETTDDLPTEPETESLGDKMLVAEALRTLPERARMVLTLHYFEDLTHPQIVERTQLPLGTVKSDIRRGL 531 V + E I + + AFARG++ ALR A+ +G LVYTFC R L RA DVTQEVF+SAW++R+R++PAKG LA WL I KNRIID VR+E+RH+ RR+ + ++P + E +GD++++AEALR L +RAR V+TLHYF+DLTH QI ER +PLGTVKSD+RRGL Sbjct: 48 VRSSESEPIDSVEKAFARGEEHALRAAYVQYGSLVYTFCRRTLDESRAKDVTQEVFISAWRSRERYEPAKGTLAGWLIAITKNRIIDNVRSEQRHAGRRSDDDPAEIPIAADVEQVGDRLMIAEALRCLSDRARRVVTLHYFDDLTHRQIAERMSVPLGTVKSDLRRGL 216
BLAST of mRNA_M-pyrifera_M_contig104833.1032.1 vs. uniprot
Match: A0A7K2BCL0_9ACTN (Sigma-70 family RNA polymerase sigma factor n=3 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7K2BCL0_9ACTN) HSP 1 Score: 199 bits (505), Expect = 3.610e-61 Identity = 100/176 (56.82%), Postives = 122/176 (69.32%), Query Frame = 1 Query: 4 ALRYPVLVGTPEVRAIGTADAAFARGDDDALRQAFDAHGRLVYTFCARALGSERANDVTQEVFLSAWKARDRFDPAKGNLAAWLTGIAKNRIIDAVRAEKRHSDRRAPETTDDLPTEPETESLGDKMLVAEALRTLPERARMVLTLHYFEDLTHPQIVERTQLPLGTVKSDIRRGL 531 ALRY ++V A D AFARG+D +L + +G LVYT C R L RA DV QEVF+SAWK +RFDPAKGNLAAWL I KNRIID +RA KRHSDRR+ D+P++ E + +++++AEALR LPE R V+T+HYF+ LTHPQI E T LPLGTVKS I RGL Sbjct: 64 ALRYHLVVQRSADEATDGVDQAFARGEDGSLEAVYRRYGDLVYTLCRRTLDESRACDVAQEVFISAWKGHERFDPAKGNLAAWLVTITKNRIIDNIRAAKRHSDRRSGADLADMPSDAGIEQIAERLMIAEALRRLPEATRRVITMHYFDGLTHPQIAETTSLPLGTVKSTIHRGL 239
BLAST of mRNA_M-pyrifera_M_contig104833.1032.1 vs. uniprot
Match: A0A7K2A7M5_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2A7M5_9ACTN) HSP 1 Score: 199 bits (507), Expect = 2.320e-60 Identity = 103/175 (58.86%), Postives = 127/175 (72.57%), Query Frame = 1 Query: 10 RYPVLVGTPEVRAIGTADAAFARGDDDALRQAFDAHGRLVYTFCARALGSERANDVTQEVFLSAWKARDRFDPAKGNLAAWLTGIAKNRIIDAVRAEKRHSDRRAPETT-DDLPTEPETESLGDKMLVAEALRTLPERARMVLTLHYFEDLTHPQIVERTQLPLGTVKSDIRRGL 531 RY V + E I + + AFARGDD ALR A+ HG LVYTFC R L RA DVTQEVF+SAWK+R R++PAKG+LA WL IA+NR+ID VRAE+RHS+RRA DD+ + + + D++L+ EALR L +RAR V+T+HYFEDLT QI E TQ PLGTVKSD+RRGL Sbjct: 153 RYSPSVASFESEPIESIEKAFARGDDGALRVAYKHHGSLVYTFCRRTLDESRAKDVTQEVFISAWKSRARYEPAKGSLAGWLIAIARNRVIDNVRAEQRHSERRASGVAPDDVHVGSQVDRIADRLLIGEALRCLSDRARQVITMHYFEDLTLRQIAEATQQPLGTVKSDLRRGL 327
BLAST of mRNA_M-pyrifera_M_contig104833.1032.1 vs. uniprot
Match: A0A4R7HYY3_9ACTN (RNA polymerase sigma-70 factor (ECF subfamily) n=2 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7HYY3_9ACTN) HSP 1 Score: 194 bits (492), Expect = 8.340e-60 Identity = 100/160 (62.50%), Postives = 120/160 (75.00%), Query Frame = 1 Query: 61 DAAFARGDDDALRQAFDAHGRLVYTFCARALGSERANDVTQEVFLSAWKARDRFDPAKGNLAAWLTGIAKNRIIDAVRAEKRHSDRRAPETT---DDLPTEPETESLGDKMLVAEALRTLPERARMVLTLHYFEDLTHPQIVERTQLPLGTVKSDIRRGL 531 DAAFA G D LR +DAHG+LVY C RAL ++ ANDVTQEVF+SAWK R++FDPAKGNL WL GI K RIID +R+E+RH+DRRA E T D+ +EP + L DKMLVA L LP+R+R V+ + Y +DLTH QI E+T LPLGTVKSDIRRGL Sbjct: 36 DAAFAAGHAD-LRAVYDAHGKLVYNLCRRALDADTANDVTQEVFVSAWKGREQFDPAKGNLGQWLVGITKRRIIDHLRSERRHADRRADEDTYIQADVHSEPTVDRLADKMLVANVLEQLPDRSRTVIHMAYVDDLTHQQIAEQTGLPLGTVKSDIRRGL 194 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104833.1032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig104833.1032.1 >prot_M-pyrifera_M_contig104833.1032.1 ID=prot_M-pyrifera_M_contig104833.1032.1|Name=mRNA_M-pyrifera_M_contig104833.1032.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=177bp PALRYPVLVGTPEVRAIGTADAAFARGDDDALRQAFDAHGRLVYTFCARAback to top mRNA from alignment at M-pyrifera_M_contig104833:4..534- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig104833.1032.1 ID=mRNA_M-pyrifera_M_contig104833.1032.1|Name=mRNA_M-pyrifera_M_contig104833.1032.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=531bp|location=Sequence derived from alignment at M-pyrifera_M_contig104833:4..534- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig104833:4..534- >mRNA_M-pyrifera_M_contig104833.1032.1 ID=mRNA_M-pyrifera_M_contig104833.1032.1|Name=mRNA_M-pyrifera_M_contig104833.1032.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1062bp|location=Sequence derived from alignment at M-pyrifera_M_contig104833:4..534- (Macrocystis pyrifera P11B4 male)back to top |