prot_M-pyrifera_M_contig10481.1024.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig10481.1024.1
Unique Nameprot_M-pyrifera_M_contig10481.1024.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length62
Homology
BLAST of mRNA_M-pyrifera_M_contig10481.1024.1 vs. uniprot
Match: D7FWF1_ECTSI (tRNA pseudouridine synthase B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWF1_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.960e-24
Identity = 50/62 (80.65%), Postives = 54/62 (87.10%), Query Frame = 0
Query:    1 VERDARPVTVYSLRQASPPPALPLVGLELECGGGFYVRTLIEDLARALGSRAHMTALERTRQ 62
            VER+AR V V SLRQA P   LPL+GLELECGGGFYVRTLIEDL RALG+RAHMTALERT+Q
Sbjct:   30 VEREARQVRVDSLRQADPALPLPLLGLELECGGGFYVRTLIEDLGRALGTRAHMTALERTKQ 91          
BLAST of mRNA_M-pyrifera_M_contig10481.1024.1 vs. uniprot
Match: A0A6H5KMC7_9PHAE (tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMC7_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 8.830e-24
Identity = 50/62 (80.65%), Postives = 54/62 (87.10%), Query Frame = 0
Query:    1 VERDARPVTVYSLRQASPPPALPLVGLELECGGGFYVRTLIEDLARALGSRAHMTALERTRQ 62
            VER+AR V V SLRQA P   LPL+GLELECGGGFYVRTLIEDL RALG+RAHMTALERT+Q
Sbjct:  108 VEREARQVRVDSLRQADPALPLPLLGLELECGGGFYVRTLIEDLGRALGTRAHMTALERTKQ 169          
BLAST of mRNA_M-pyrifera_M_contig10481.1024.1 vs. uniprot
Match: A0A835Z9D0_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9D0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.850e-15
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 0
Query:    1 VERDARPVTVYSLRQASPPPALPLVGLELECGGGFYVRTLIEDLARALGSRAHMTALERTRQ 62
            VERDARPVT+Y L   +   ALP   L ++C GG Y+RTLI D+ARALG+R HMT+L RT+Q
Sbjct:  176 VERDARPVTIYQLEAPAEGVALPSFALNVQCSGGTYIRTLIADIARALGTRGHMTSLVRTKQ 237          
BLAST of mRNA_M-pyrifera_M_contig10481.1024.1 vs. uniprot
Match: A0A8C6LJI8_NOTFU (tRNA pseudouridine(55) synthase n=2 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6LJI8_NOTFU)

HSP 1 Score: 65.5 bits (158), Expect = 1.170e-11
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 0
Query:    1 VERDARPVTVYSLRQASPPPALPLVGLELECGGGFYVRTLIEDLARALGSRAHMTALERTRQ 62
            V + ARPVTVYSL      P  PL  L++ECGGGFYVR+L++DL +AL S AH+  L RT+Q
Sbjct:   77 VAKPARPVTVYSLTLQEFKP--PLFTLDIECGGGFYVRSLVDDLGKALSSCAHVKELIRTKQ 136          
BLAST of mRNA_M-pyrifera_M_contig10481.1024.1 vs. uniprot
Match: A0A8J2SXF4_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SXF4_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.580e-11
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 0
Query:    1 VERDARPVTVYSLRQASP--------PPALPLVGLELECGGGFYVRTLIEDLARALGSRAHMTALERTRQ 62
            VER+AR V+V  LR            P +LP  GL++EC GG Y+RTLI+DLAR  GS  HM  LERTRQ
Sbjct:  186 VEREARQVSVSRLRMVDDRGVGSHEAPLSLPFFGLDVECSGGTYIRTLIDDLAREAGSCGHMVELERTRQ 255          
BLAST of mRNA_M-pyrifera_M_contig10481.1024.1 vs. uniprot
Match: A0A7K2AJG5_9ACTN (tRNA pseudouridine synthase B n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2AJG5_9ACTN)

HSP 1 Score: 66.6 bits (161), Expect = 1.910e-11
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 0
Query:    1 VERDARPVTVYSLRQAS-PPPALPLVGLELECGGGFYVRTLIEDLARALGSRAHMTALERTR 61
            VERDARP TV+ L+       + PLVGL + CG G YVR+L +DLARALG RAH+  L RTR
Sbjct:  164 VERDARPATVHFLKVTGFEKGSNPLVGLRVVCGKGLYVRSLADDLARALGGRAHLVELRRTR 225          
BLAST of mRNA_M-pyrifera_M_contig10481.1024.1 vs. uniprot
Match: UPI00198CCE54 (probable tRNA pseudouridine synthase 1 n=1 Tax=Silurus meridionalis TaxID=175797 RepID=UPI00198CCE54)

HSP 1 Score: 65.9 bits (159), Expect = 3.300e-11
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 0
Query:    3 RDARPVTVYSLRQASPPPALPLVGLELECGGGFYVRTLIEDLARALGSRAHMTALERTRQ 62
            + ARPVTVYSL      P  PL  LE+ECGGGFYVR+L++DL +AL S AH+  L RT+Q
Sbjct:  170 KPARPVTVYSLSLQDFNP--PLFTLEIECGGGFYVRSLVDDLGKALSSCAHVQELTRTKQ 227          
BLAST of mRNA_M-pyrifera_M_contig10481.1024.1 vs. uniprot
Match: A0A4W4EJJ6_ELEEL (tRNA pseudouridine(55) synthase n=2 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4EJJ6_ELEEL)

HSP 1 Score: 65.9 bits (159), Expect = 3.430e-11
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 0
Query:    3 RDARPVTVYSLRQASPPPALPLVGLELECGGGFYVRTLIEDLARALGSRAHMTALERTRQ 62
            + ARPVTVYSL      P  PL  L++ECGGGFYVR+L++DL +AL S AH+  L RT+Q
Sbjct:  180 KPARPVTVYSLSLQDFSP--PLFSLDIECGGGFYVRSLVDDLGKALSSCAHVRELTRTKQ 237          
BLAST of mRNA_M-pyrifera_M_contig10481.1024.1 vs. uniprot
Match: A0A1A8B795_NOTFU (tRNA pseudouridine(55) synthase n=11 Tax=Nothobranchiidae TaxID=405002 RepID=A0A1A8B795_NOTFU)

HSP 1 Score: 65.5 bits (158), Expect = 3.720e-11
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 0
Query:    1 VERDARPVTVYSLRQASPPPALPLVGLELECGGGFYVRTLIEDLARALGSRAHMTALERTRQ 62
            V + ARPVTVYSL      P  PL  L++ECGGGFYVR+L++DL +AL S AH+  L RT+Q
Sbjct:  169 VAKPARPVTVYSLTLQEFKP--PLFTLDIECGGGFYVRSLVDDLGKALSSCAHVKELIRTKQ 228          
BLAST of mRNA_M-pyrifera_M_contig10481.1024.1 vs. uniprot
Match: UPI0006AAFFE4 (probable tRNA pseudouridine synthase 1 isoform X2 n=1 Tax=Pundamilia nyererei TaxID=303518 RepID=UPI0006AAFFE4)

HSP 1 Score: 64.7 bits (156), Expect = 4.530e-11
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 0
Query:    3 RDARPVTVYSLRQASPPPALPLVGLELECGGGFYVRTLIEDLARALGSRAHMTALERTRQ 62
            + ARPVTVYSL      P  PL  L++ECGGGFYVR+L++DL +AL S AH+  L RT+Q
Sbjct:  125 KPARPVTVYSLTLQEFKP--PLFTLDIECGGGFYVRSLVDDLGKALSSCAHVKELVRTKQ 182          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10481.1024.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWF1_ECTSI1.960e-2480.65tRNA pseudouridine synthase B n=1 Tax=Ectocarpus s... [more]
A0A6H5KMC7_9PHAE8.830e-2480.65tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus... [more]
A0A835Z9D0_9STRA1.850e-1559.68tRNA pseudouridine(55) synthase n=1 Tax=Tribonema ... [more]
A0A8C6LJI8_NOTFU1.170e-1156.45tRNA pseudouridine(55) synthase n=2 Tax=Nothobranc... [more]
A0A8J2SXF4_9STRA1.580e-1152.86tRNA pseudouridine(55) synthase n=1 Tax=Pelagomona... [more]
A0A7K2AJG5_9ACTN1.910e-1158.06tRNA pseudouridine synthase B n=1 Tax=Acidimicrobi... [more]
UPI00198CCE543.300e-1158.33probable tRNA pseudouridine synthase 1 n=1 Tax=Sil... [more]
A0A4W4EJJ6_ELEEL3.430e-1156.67tRNA pseudouridine(55) synthase n=2 Tax=Electropho... [more]
A0A1A8B795_NOTFU3.720e-1156.45tRNA pseudouridine(55) synthase n=11 Tax=Nothobran... [more]
UPI0006AAFFE44.530e-1156.67probable tRNA pseudouridine synthase 1 isoform X2 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.2350.10coord: 1..62
e-value: 2.5E-15
score: 58.3
IPR014780tRNA pseudouridine synthase II, TruBPANTHERPTHR13767TRNA-PSEUDOURIDINE SYNTHASEcoord: 1..62
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 1..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10481contigM-pyrifera_M_contig10481:86..271 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10481.1024.1mRNA_M-pyrifera_M_contig10481.1024.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig10481 86..271 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig10481.1024.1 ID=prot_M-pyrifera_M_contig10481.1024.1|Name=mRNA_M-pyrifera_M_contig10481.1024.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
VERDARPVTVYSLRQASPPPALPLVGLELECGGGFYVRTLIEDLARALGS
RAHMTALERTRQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014780tRNA_psdUridine_synth_TruB
IPR020103PsdUridine_synth_cat_dom_sf