prot_M-pyrifera_M_contig104711.1013.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig104711.1013.1
Unique Nameprot_M-pyrifera_M_contig104711.1013.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length107
Homology
BLAST of mRNA_M-pyrifera_M_contig104711.1013.1 vs. uniprot
Match: I0YV96_COCSC (DNA replication factor C complex subunit 5 n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YV96_COCSC)

HSP 1 Score: 99.0 bits (245), Expect = 1.290e-22
Identity = 50/100 (50.00%), Postives = 67/100 (67.00%), Query Frame = 0
Query:    1 VYATTGDPPPSDVNAAVQALLNEPFRSAHATIRSLQVDKGLSLTDLVHEIAKIAARLAVSPPVRISLLTQLADIEHRLNAGVGEELQVGALVGAFAIARE 100
            VY  TG+P P D+ A VQAL NE F    A ++ +Q++KGL+LTD+V ++     R+ +   VRI L+  LAD EHRL  G  E LQ+GALVGAF++ARE
Sbjct:  228 VYQCTGNPLPKDIEAIVQALFNEDFVDVFAKVQDMQINKGLALTDIVQQLHPWVFRVNMPASVRIKLVDALADTEHRLAFGTSERLQLGALVGAFSVARE 327          
BLAST of mRNA_M-pyrifera_M_contig104711.1013.1 vs. uniprot
Match: E1ZCQ9_CHLVA (AAA domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZCQ9_CHLVA)

HSP 1 Score: 93.2 bits (230), Expect = 1.770e-20
Identity = 45/99 (45.45%), Postives = 64/99 (64.65%), Query Frame = 0
Query:    2 YATTGDPPPSDVNAAVQALLNEPFRSAHATIRSLQVDKGLSLTDLVHEIAKIAARLAVSPPVRISLLTQLADIEHRLNAGVGEELQVGALVGAFAIARE 100
            YAT G P P D+    Q LLNEP   A   +  LQ+ KG++L D++ ++     R+ + PPVRI L++++ADIEHRL  G  + LQ+GAL GAFA A++
Sbjct:  223 YATAGKPLPQDIERCAQWLLNEPLGEAFQHMLDLQLQKGVALVDILQQLHPFVFRIGMPPPVRIQLVSKMADIEHRLAYGTSDRLQLGALCGAFAEAKD 321          
BLAST of mRNA_M-pyrifera_M_contig104711.1013.1 vs. uniprot
Match: UPI001AE8ECC2 (replication factor C subunit 5-like n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=UPI001AE8ECC2)

HSP 1 Score: 93.2 bits (230), Expect = 2.100e-20
Identity = 47/106 (44.34%), Postives = 74/106 (69.81%), Query Frame = 0
Query:    1 VYATTGDPPPSDVNAAVQALLNEPFRSAHATIRS-LQVDKGLSLTDLVHEIAKIAARLAVSPPVRISLLTQLADIEHRLNAGVGEELQVGALVGAFAIAREMQAKE 105
            +YA TG P PSD+  A+++LLN+    ++  I++ LQ +KGLSL D++ E+  +  RL +   V++ LL ++AD EHR+ +G  E++Q+G++VGAF IAREM A E
Sbjct:  230 IYACTGHPLPSDITKALESLLNDKLSESYHKIQNELQTNKGLSLIDILTELHLLVHRLEIPNKVKVYLLIKMADAEHRMLSGASEKMQLGSIVGAFRIAREMIANE 335          
BLAST of mRNA_M-pyrifera_M_contig104711.1013.1 vs. uniprot
Match: A0A7S3FAF0_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FAF0_9VIRI)

HSP 1 Score: 92.0 bits (227), Expect = 5.720e-20
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 0
Query:    1 VYATTGDPPPSDVNAAVQALLNEPFRSAHATIRSLQVDKGLSLTDLVHEIAKIAARLAVSPPVRISLLTQLADIEHRLNAGVGEELQVGALVGAFAIAR 99
            VY+ TG+P PSDV  AVQ LLN+    A A +++L+ DKGL+L D+V E+      L++   VR  L+  LADIEH L AG  +++Q+GAL GAF  AR
Sbjct:  237 VYSCTGNPLPSDVEGAVQTLLNDKMSQAFAALQTLKADKGLALADIVREVHAHVWTLSLPGDVRADLVIALADIEHALAAGASDKMQLGALCGAFVKAR 335          
BLAST of mRNA_M-pyrifera_M_contig104711.1013.1 vs. uniprot
Match: H9GNG0_ANOCA (Replication factor C subunit 5 n=3 Tax=Episquamata TaxID=1329912 RepID=H9GNG0_ANOCA)

HSP 1 Score: 91.3 bits (225), Expect = 1.100e-19
Identity = 49/106 (46.23%), Postives = 68/106 (64.15%), Query Frame = 0
Query:    1 VYATTGDPPPSDVNAAVQALLNEPFRSAHATIRSLQVDKGLSLTDLVHEIAKIAARLAVSPPVRISLLTQLADIEHRLNAGVGEELQVGALVGAFAIAREMQAKEA 106
            VY  TG P  SD+   +  +LN+ F +A+  I  L+  KGL+L D++ EI     R+   P VRI LL ++ADIEHRL AG  E++Q+GALVGAF + R++ A EA
Sbjct:  237 VYTCTGQPLKSDIANILDWMLNQDFTAAYHNIMELKTLKGLALHDILTEIHLFVHRVDFPPSVRIQLLIKMADIEHRLAAGTSEKIQLGALVGAFQVTRDLIAAEA 342          
BLAST of mRNA_M-pyrifera_M_contig104711.1013.1 vs. uniprot
Match: A0A0L0D610_THETB (Replication factor C subunit 5 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D610_THETB)

HSP 1 Score: 90.5 bits (223), Expect = 2.400e-19
Identity = 45/105 (42.86%), Postives = 68/105 (64.76%), Query Frame = 0
Query:    1 VYATTGDPPPSDVNAAVQALLNEPFRSAHATIRSLQVDKGLSLTDLVHEIAKIAARLAVSPPVRISLLTQLADIEHRLNAGVGEELQVGALVGAFAIAREMQAKE 105
            +Y+TTG P PSD+   ++ +LN+P+ +A+A +  L  DKGL+L D+V EI  + A +  S  V   LL +LAD+E+RL     E +Q+GALVG FA+ R++   E
Sbjct:  222 IYSTTGAPMPSDIKLILRWMLNDPYSTAYAAVTKLCTDKGLALIDIVREIHVVVATMQFSSNVLGVLLKELADLEYRLTFATTERVQLGALVGLFAVVRDLVGTE 326          
BLAST of mRNA_M-pyrifera_M_contig104711.1013.1 vs. uniprot
Match: A0A2P6NXL0_9EUKA (Replication factor C subunit 5-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NXL0_9EUKA)

HSP 1 Score: 89.7 bits (221), Expect = 4.410e-19
Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = 0
Query:    1 VYATTGDPPPSDVNAAVQALLNEPFRSAHATIRSLQVDKGLSLTDLVHEIAKIAARLAVSPPVRISLLTQLADIEHRLNAGVGEELQVGALVGAFAIAREMQAKE 105
            +Y  TG P PSD+      L N+ F+ A   I  LQ  KGL+L D++ E+ +   ++  S  V++ L+ +LADIEHRL AG  E+L +GALVGAF +ARE  +KE
Sbjct:  243 IYQCTGQPLPSDIQTIFDTLFNKGFKFAVDKISKLQSTKGLALQDIITELHRKILKVEFSEEVKMILIDKLADIEHRLAAGTSEKLNLGALVGAFQLAREQISKE 347          
BLAST of mRNA_M-pyrifera_M_contig104711.1013.1 vs. uniprot
Match: A0A2P6V1R9_9CHLO (Replication factor C subunit 5 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V1R9_9CHLO)

HSP 1 Score: 90.1 bits (222), Expect = 8.640e-19
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = 0
Query:    2 YATTGDPPPSDVNAAVQALLNEPFRSAHATIRSLQVDKGLSLTDLVHEIAKIAARLAVSPPVRISLLTQLADIEHRLNAGVGEELQVGALVGAFAIARE 100
            YAT G P P+D++ A+Q LLNEP   A   +  LQ  KG++L D++ ++     R+A+   VRI L+++LA IEHRL  G  + LQ+GA+ GAFA A+E
Sbjct:  223 YATAGKPLPADIDQAMQWLLNEPLSEAFCRLSELQAGKGVALVDILQQLHPFVFRIAMPSGVRIELVSKLAAIEHRLAYGTSDRLQLGAMCGAFAEAKE 321          
BLAST of mRNA_M-pyrifera_M_contig104711.1013.1 vs. uniprot
Match: A0A7S0XH10_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0XH10_9CHLO)

HSP 1 Score: 88.2 bits (217), Expect = 2.080e-18
Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = 0
Query:    1 VYATTGDPPPSDVNAAVQALLNEPFRSAHATIRSLQVDKGLSLTDLVHEIAKIAARLAVSPPVRISLLTQLADIEHRLNAGVGEELQVGALVGAFAIARE 100
            +YATTG P P D+ A    LLN PF+ A   + +++ ++GL+L D+   + +   RL + PP R  L++Q+AD+EHRL     E LQ+ ALVGAF  A+E
Sbjct:  271 IYATTGQPRPQDIEAIAGVLLNSPFQEAVEKVSAIKTERGLALADITRLLCEYVFRLHMPPPARAELVSQMADVEHRLAYVTHERLQLLALVGAFNKAKE 370          
BLAST of mRNA_M-pyrifera_M_contig104711.1013.1 vs. uniprot
Match: A0A6P8HV55_ACTTE (replication factor C subunit 5-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HV55_ACTTE)

HSP 1 Score: 87.0 bits (214), Expect = 3.630e-18
Identity = 44/101 (43.56%), Postives = 66/101 (65.35%), Query Frame = 0
Query:    1 VYATTGDPPPSDVNAAVQALLNEPFRSAHATIRSLQVDKGLSLTDLVHEIAKIAARLAVSPPVRISLLTQLADIEHRLNAGVGEELQVGALVGAFAIAREM 101
            VY  TG P  SD++  V+ +LNE F +A+  I  L+  KGL+L D++ E+     R+     VRI LL ++AD+EHRL AG  E++Q+G+L+ AF +AR+M
Sbjct:  225 VYLCTGQPLRSDISKIVEWMLNEDFATAYNNIMKLKTLKGLALQDILTEVHTYVHRVDFPAKVRIYLLEKMADVEHRLAAGTAEKIQLGSLIAAFQVARDM 325          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104711.1013.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
I0YV96_COCSC1.290e-2250.00DNA replication factor C complex subunit 5 n=2 Tax... [more]
E1ZCQ9_CHLVA1.770e-2045.45AAA domain-containing protein n=1 Tax=Chlorella va... [more]
UPI001AE8ECC22.100e-2044.34replication factor C subunit 5-like n=1 Tax=Lepeop... [more]
A0A7S3FAF0_9VIRI5.720e-2048.48Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
H9GNG0_ANOCA1.100e-1946.23Replication factor C subunit 5 n=3 Tax=Episquamata... [more]
A0A0L0D610_THETB2.400e-1942.86Replication factor C subunit 5 n=1 Tax=Thecamonas ... [more]
A0A2P6NXL0_9EUKA4.410e-1944.76Replication factor C subunit 5-like n=1 Tax=Planop... [more]
A0A2P6V1R9_9CHLO8.640e-1945.45Replication factor C subunit 5 n=1 Tax=Micractiniu... [more]
A0A7S0XH10_9CHLO2.080e-1843.00Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A6P8HV55_ACTTE3.630e-1843.56replication factor C subunit 5-like n=1 Tax=Actini... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.272.10coord: 8..106
e-value: 5.2E-25
score: 89.3
NoneNo IPR availablePANTHERPTHR11669:SF9REPLICATION FACTOR C SUBUNIT 5coord: 1..102
NoneNo IPR availablePANTHERPTHR11669REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNITcoord: 1..102
IPR013748Replication factor C, C-terminalPFAMPF08542Rep_fac_Ccoord: 8..93
e-value: 1.2E-16
score: 60.9
IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalSUPERFAMILY48019post-AAA+ oligomerization domain-likecoord: 8..100

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104711contigM-pyrifera_M_contig104711:321..641 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104711.1013.1mRNA_M-pyrifera_M_contig104711.1013.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig104711 321..641 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig104711.1013.1 ID=prot_M-pyrifera_M_contig104711.1013.1|Name=mRNA_M-pyrifera_M_contig104711.1013.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
VYATTGDPPPSDVNAAVQALLNEPFRSAHATIRSLQVDKGLSLTDLVHEI
AKIAARLAVSPPVRISLLTQLADIEHRLNAGVGEELQVGALVGAFAIARE
MQAKEA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013748Rep_factorC_C
IPR008921DNA_pol3_clamp-load_cplx_C