mRNA_M-pyrifera_M_contig104711.1013.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104711.1013.1
Unique NamemRNA_M-pyrifera_M_contig104711.1013.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104711.1013.1 vs. uniprot
Match: I0YV96_COCSC (DNA replication factor C complex subunit 5 n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YV96_COCSC)

HSP 1 Score: 99.0 bits (245), Expect = 1.290e-22
Identity = 50/100 (50.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:    1 VYATTGDPPPSDVNAAVQALLNEPFRSAHATIRSLQVDKGLSLTDLVHEIAKIAARLAVSPPVRISLLTQLADIEHRLNAGVGEELQVGALVGAFAIARE 300
            VY  TG+P P D+ A VQAL NE F    A ++ +Q++KGL+LTD+V ++     R+ +   VRI L+  LAD EHRL  G  E LQ+GALVGAF++ARE
Sbjct:  228 VYQCTGNPLPKDIEAIVQALFNEDFVDVFAKVQDMQINKGLALTDIVQQLHPWVFRVNMPASVRIKLVDALADTEHRLAFGTSERLQLGALVGAFSVARE 327
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BLAST of mRNA_M-pyrifera_M_contig104711.1013.1 vs. uniprot
Match: E1ZCQ9_CHLVA (AAA domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZCQ9_CHLVA)

HSP 1 Score: 93.2 bits (230), Expect = 1.770e-20
Identity = 45/99 (45.45%), Postives = 64/99 (64.65%), Query Frame = 1 
Query:    4 YATTGDPPPSDVNAAVQALLNEPFRSAHATIRSLQVDKGLSLTDLVHEIAKIAARLAVSPPVRISLLTQLADIEHRLNAGVGEELQVGALVGAFAIARE 300
            YAT G P P D+    Q LLNEP   A   +  LQ+ KG++L D++ ++     R+ + PPVRI L++++ADIEHRL  G  + LQ+GAL GAFA A++
Sbjct:  223 YATAGKPLPQDIERCAQWLLNEPLGEAFQHMLDLQLQKGVALVDILQQLHPFVFRIGMPPPVRIQLVSKMADIEHRLAYGTSDRLQLGALCGAFAEAKD 321
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BLAST of mRNA_M-pyrifera_M_contig104711.1013.1 vs. uniprot
Match: UPI001AE8ECC2 (replication factor C subunit 5-like n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=UPI001AE8ECC2)

HSP 1 Score: 93.2 bits (230), Expect = 2.100e-20
Identity = 47/106 (44.34%), Postives = 74/106 (69.81%), Query Frame = 1 
Query:    1 VYATTGDPPPSDVNAAVQALLNEPFRSAHATIRS-LQVDKGLSLTDLVHEIAKIAARLAVSPPVRISLLTQLADIEHRLNAGVGEELQVGALVGAFAIAREMQAKE 315
            +YA TG P PSD+  A+++LLN+    ++  I++ LQ +KGLSL D++ E+  +  RL +   V++ LL ++AD EHR+ +G  E++Q+G++VGAF IAREM A E
Sbjct:  230 IYACTGHPLPSDITKALESLLNDKLSESYHKIQNELQTNKGLSLIDILTELHLLVHRLEIPNKVKVYLLIKMADAEHRMLSGASEKMQLGSIVGAFRIAREMIANE 335
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BLAST of mRNA_M-pyrifera_M_contig104711.1013.1 vs. uniprot
Match: A0A7S3FAF0_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FAF0_9VIRI)

HSP 1 Score: 92.0 bits (227), Expect = 5.720e-20
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    1 VYATTGDPPPSDVNAAVQALLNEPFRSAHATIRSLQVDKGLSLTDLVHEIAKIAARLAVSPPVRISLLTQLADIEHRLNAGVGEELQVGALVGAFAIAR 297
            VY+ TG+P PSDV  AVQ LLN+    A A +++L+ DKGL+L D+V E+      L++   VR  L+  LADIEH L AG  +++Q+GAL GAF  AR
Sbjct:  237 VYSCTGNPLPSDVEGAVQTLLNDKMSQAFAALQTLKADKGLALADIVREVHAHVWTLSLPGDVRADLVIALADIEHALAAGASDKMQLGALCGAFVKAR 335
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BLAST of mRNA_M-pyrifera_M_contig104711.1013.1 vs. uniprot
Match: H9GNG0_ANOCA (Replication factor C subunit 5 n=3 Tax=Episquamata TaxID=1329912 RepID=H9GNG0_ANOCA)

HSP 1 Score: 91.3 bits (225), Expect = 1.100e-19
Identity = 49/106 (46.23%), Postives = 68/106 (64.15%), Query Frame = 1 
Query:    1 VYATTGDPPPSDVNAAVQALLNEPFRSAHATIRSLQVDKGLSLTDLVHEIAKIAARLAVSPPVRISLLTQLADIEHRLNAGVGEELQVGALVGAFAIAREMQAKEA 318
            VY  TG P  SD+   +  +LN+ F +A+  I  L+  KGL+L D++ EI     R+   P VRI LL ++ADIEHRL AG  E++Q+GALVGAF + R++ A EA
Sbjct:  237 VYTCTGQPLKSDIANILDWMLNQDFTAAYHNIMELKTLKGLALHDILTEIHLFVHRVDFPPSVRIQLLIKMADIEHRLAAGTSEKIQLGALVGAFQVTRDLIAAEA 342
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BLAST of mRNA_M-pyrifera_M_contig104711.1013.1 vs. uniprot
Match: A0A0L0D610_THETB (Replication factor C subunit 5 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D610_THETB)

HSP 1 Score: 90.5 bits (223), Expect = 2.400e-19
Identity = 45/105 (42.86%), Postives = 68/105 (64.76%), Query Frame = 1 
Query:    1 VYATTGDPPPSDVNAAVQALLNEPFRSAHATIRSLQVDKGLSLTDLVHEIAKIAARLAVSPPVRISLLTQLADIEHRLNAGVGEELQVGALVGAFAIAREMQAKE 315
            +Y+TTG P PSD+   ++ +LN+P+ +A+A +  L  DKGL+L D+V EI  + A +  S  V   LL +LAD+E+RL     E +Q+GALVG FA+ R++   E
Sbjct:  222 IYSTTGAPMPSDIKLILRWMLNDPYSTAYAAVTKLCTDKGLALIDIVREIHVVVATMQFSSNVLGVLLKELADLEYRLTFATTERVQLGALVGLFAVVRDLVGTE 326
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BLAST of mRNA_M-pyrifera_M_contig104711.1013.1 vs. uniprot
Match: A0A2P6NXL0_9EUKA (Replication factor C subunit 5-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NXL0_9EUKA)

HSP 1 Score: 89.7 bits (221), Expect = 4.410e-19
Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = 1 
Query:    1 VYATTGDPPPSDVNAAVQALLNEPFRSAHATIRSLQVDKGLSLTDLVHEIAKIAARLAVSPPVRISLLTQLADIEHRLNAGVGEELQVGALVGAFAIAREMQAKE 315
            +Y  TG P PSD+      L N+ F+ A   I  LQ  KGL+L D++ E+ +   ++  S  V++ L+ +LADIEHRL AG  E+L +GALVGAF +ARE  +KE
Sbjct:  243 IYQCTGQPLPSDIQTIFDTLFNKGFKFAVDKISKLQSTKGLALQDIITELHRKILKVEFSEEVKMILIDKLADIEHRLAAGTSEKLNLGALVGAFQLAREQISKE 347
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BLAST of mRNA_M-pyrifera_M_contig104711.1013.1 vs. uniprot
Match: A0A2P6V1R9_9CHLO (Replication factor C subunit 5 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V1R9_9CHLO)

HSP 1 Score: 90.1 bits (222), Expect = 8.640e-19
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    4 YATTGDPPPSDVNAAVQALLNEPFRSAHATIRSLQVDKGLSLTDLVHEIAKIAARLAVSPPVRISLLTQLADIEHRLNAGVGEELQVGALVGAFAIARE 300
            YAT G P P+D++ A+Q LLNEP   A   +  LQ  KG++L D++ ++     R+A+   VRI L+++LA IEHRL  G  + LQ+GA+ GAFA A+E
Sbjct:  223 YATAGKPLPADIDQAMQWLLNEPLSEAFCRLSELQAGKGVALVDILQQLHPFVFRIAMPSGVRIELVSKLAAIEHRLAYGTSDRLQLGAMCGAFAEAKE 321
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BLAST of mRNA_M-pyrifera_M_contig104711.1013.1 vs. uniprot
Match: A0A7S0XH10_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0XH10_9CHLO)

HSP 1 Score: 88.2 bits (217), Expect = 2.080e-18
Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:    1 VYATTGDPPPSDVNAAVQALLNEPFRSAHATIRSLQVDKGLSLTDLVHEIAKIAARLAVSPPVRISLLTQLADIEHRLNAGVGEELQVGALVGAFAIARE 300
            +YATTG P P D+ A    LLN PF+ A   + +++ ++GL+L D+   + +   RL + PP R  L++Q+AD+EHRL     E LQ+ ALVGAF  A+E
Sbjct:  271 IYATTGQPRPQDIEAIAGVLLNSPFQEAVEKVSAIKTERGLALADITRLLCEYVFRLHMPPPARAELVSQMADVEHRLAYVTHERLQLLALVGAFNKAKE 370
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BLAST of mRNA_M-pyrifera_M_contig104711.1013.1 vs. uniprot
Match: A0A6P8HV55_ACTTE (replication factor C subunit 5-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HV55_ACTTE)

HSP 1 Score: 87.0 bits (214), Expect = 3.630e-18
Identity = 44/101 (43.56%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 VYATTGDPPPSDVNAAVQALLNEPFRSAHATIRSLQVDKGLSLTDLVHEIAKIAARLAVSPPVRISLLTQLADIEHRLNAGVGEELQVGALVGAFAIAREM 303
            VY  TG P  SD++  V+ +LNE F +A+  I  L+  KGL+L D++ E+     R+     VRI LL ++AD+EHRL AG  E++Q+G+L+ AF +AR+M
Sbjct:  225 VYLCTGQPLRSDISKIVEWMLNEDFATAYNNIMKLKTLKGLALQDILTEVHTYVHRVDFPAKVRIYLLEKMADVEHRLAAGTAEKIQLGSLIAAFQVARDM 325
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104711.1013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
I0YV96_COCSC1.290e-2250.00DNA replication factor C complex subunit 5 n=2 Tax... [more]
E1ZCQ9_CHLVA1.770e-2045.45AAA domain-containing protein n=1 Tax=Chlorella va... [more]
UPI001AE8ECC22.100e-2044.34replication factor C subunit 5-like n=1 Tax=Lepeop... [more]
A0A7S3FAF0_9VIRI5.720e-2048.48Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
H9GNG0_ANOCA1.100e-1946.23Replication factor C subunit 5 n=3 Tax=Episquamata... [more]
A0A0L0D610_THETB2.400e-1942.86Replication factor C subunit 5 n=1 Tax=Thecamonas ... [more]
A0A2P6NXL0_9EUKA4.410e-1944.76Replication factor C subunit 5-like n=1 Tax=Planop... [more]
A0A2P6V1R9_9CHLO8.640e-1945.45Replication factor C subunit 5 n=1 Tax=Micractiniu... [more]
A0A7S0XH10_9CHLO2.080e-1843.00Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A6P8HV55_ACTTE3.630e-1843.56replication factor C subunit 5-like n=1 Tax=Actini... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104711contigM-pyrifera_M_contig104711:321..641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score99.4
Seed ortholog evalue1.1e-18
Seed eggNOG ortholog248742.XP_005646859.1
Preferred namerfc5
KEGG koko:K10756
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005663,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010604,GO:0019219,GO:0019222,GO:0019899,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031347,GO:0031348,GO:0031390,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051338,GO:0051347,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0080134,GO:0090304,GO:0090329,GO:1900262,GO:1900264,GO:1901360,GO:1901576,GO:2000112,GO:2000278,GO:2000573
EggNOG free text desc.DNA replication factor C complex subunit 5
EggNOG OGs34JBW@3041,37I57@33090,COG0470@1,KOG0990@2759
COG Functional cat.L
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036,ko03400
Exons1
Model size321
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.9747741-CDS-M-pyrifera_M_contig104711:320..6411622815554.9747741-CDS-M-pyrifera_M_contig104711:320..641Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104711 321..641 -
1692277461.6819522-CDS-M-pyrifera_M_contig104711:320..6411692277461.6819522-CDS-M-pyrifera_M_contig104711:320..641Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104711 321..641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104711.1013.1prot_M-pyrifera_M_contig104711.1013.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104711 321..641 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104711.1013.1

>prot_M-pyrifera_M_contig104711.1013.1 ID=prot_M-pyrifera_M_contig104711.1013.1|Name=mRNA_M-pyrifera_M_contig104711.1013.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
VYATTGDPPPSDVNAAVQALLNEPFRSAHATIRSLQVDKGLSLTDLVHEI
AKIAARLAVSPPVRISLLTQLADIEHRLNAGVGEELQVGALVGAFAIARE
MQAKEA*
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mRNA from alignment at M-pyrifera_M_contig104711:321..641-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104711.1013.1 ID=mRNA_M-pyrifera_M_contig104711.1013.1|Name=mRNA_M-pyrifera_M_contig104711.1013.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig104711:321..641- (Macrocystis pyrifera P11B4 male)
GTCTACGCCACCACCGGTGACCCACCCCCCTCAGACGTGAACGCAGCCGT
GCAAGCGCTGCTCAACGAACCCTTTCGCTCCGCCCACGCCACCATCCGCT
CCCTCCAGGTCGACAAGGGGCTGTCGCTCACTGACCTCGTGCACGAAATC
GCAAAAATCGCAGCCAGACTCGCCGTGTCCCCGCCTGTGCGCATCTCCCT
CCTCACACAGCTCGCAGACATCGAACACAGACTCAACGCAGGCGTAGGGG
AAGAACTCCAGGTCGGAGCACTAGTAGGCGCTTTCGCCATCGCTAGGGAA
ATGCAAGCAAAGGAGGCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104711:321..641-

>mRNA_M-pyrifera_M_contig104711.1013.1 ID=mRNA_M-pyrifera_M_contig104711.1013.1|Name=mRNA_M-pyrifera_M_contig104711.1013.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig104711:321..641- (Macrocystis pyrifera P11B4 male)
GTCTACGCCACCACCGGTGACCCACCCCCCTCAGACGTGAACGCAGCCGT
GCAAGCGCTGCTCAACGAACCCTTTCGCTCCGCCCACGCCACCATCCGCT
CCCTCCAGGTCGACAAGGGGCTGTCGCTCACTGACCTCGTGCACGAAATC
GCAAAAATCGCAGCCAGACTCGCCGTGTCCCCGCCTGTGCGCATCTCCCT
CCTCACACAGCTCGCAGACATCGAACACAGACTCAACGCAGGCGTAGGGG
AAGAACTCCAGGTCGGAGCACTAGTAGGCGCTTTCGCCATCGCTAGGGAA
ATGCAAGCAAAGGAGGCGTGAGTCTACGCCACCACCGGTGACCCACCCCC
CTCAGACGTGAACGCAGCCGTGCAAGCGCTGCTCAACGAACCCTTTCGCT
CCGCCCACGCCACCATCCGCTCCCTCCAGGTCGACAAGGGGCTGTCGCTC
ACTGACCTCGTGCACGAAATCGCAAAAATCGCAGCCAGACTCGCCGTGTC
CCCGCCTGTGCGCATCTCCCTCCTCACACAGCTCGCAGACATCGAACACA
GACTCAACGCAGGCGTAGGGGAAGAACTCCAGGTCGGAGCACTAGTAGGC
GCTTTCGCCATCGCTAGGGAAATGCAAGCAAAGGAGGCGTGA
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