mRNA_M-pyrifera_M_contig99883.22972.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99883.22972.1
Unique NamemRNA_M-pyrifera_M_contig99883.22972.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99883.22972.1 vs. uniprot
Match: A0A3D5DDR0_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DDR0_9GAMM)

HSP 1 Score: 106 bits (265), Expect = 7.080e-29
Identity = 50/55 (90.91%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 DKYGEKMSALLIDPNTNELNANGTMYVDSKGRRVFIDDTLEDGETIAFLVGIAGG 165
            +KYG+KMSALLIDP+TN+LNANGTMYVDSKGRRVFI+DTLEDGETIAFLVGIAGG
Sbjct:   39 EKYGDKMSALLIDPDTNQLNANGTMYVDSKGRRVFIEDTLEDGETIAFLVGIAGG 93
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BLAST of mRNA_M-pyrifera_M_contig99883.22972.1 vs. uniprot
Match: A0A7Y4UB19_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7Y4UB19_9DELT)

HSP 1 Score: 84.7 bits (208), Expect = 3.440e-20
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    4 KYGEKMSALLIDPNTNELNANGTMYVDSKGRRVFIDDTLEDGETIAFLVGIAGG 165
            KYG  M ALLIDP T +LN  GT+++DSKGRR+ IDDTLEDGE IAF+VGIAGG
Sbjct:   40 KYGPLMEALLIDPETKDLNNKGTLFLDSKGRRICIDDTLEDGEVIAFMVGIAGG 93
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BLAST of mRNA_M-pyrifera_M_contig99883.22972.1 vs. uniprot
Match: A0A1Z9ULC2_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9ULC2_9GAMM)

HSP 1 Score: 79.3 bits (194), Expect = 4.650e-18
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 DKYGEKMSALLIDPNTNELNANGTMYVDSKGRRVFIDDTLEDGETIAFLVGIAGG 165
            D YG KM A+LIDP+T ELN  GTM+VD++G RV + D L DG+TI FLVGIAGG
Sbjct:   39 DTYGPKMEAMLIDPDTRELNERGTMFVDARGMRVSMSDALNDGDTITFLVGIAGG 93
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99883.22972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A3D5DDR0_9GAMM7.080e-2990.91Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A7Y4UB19_9DELT3.440e-2072.22Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A1Z9ULC2_9GAMM4.650e-1865.45Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99883contigM-pyrifera_M_contig99883:517..684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size150
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816916.213902-CDS-M-pyrifera_M_contig99883:516..6661622816916.213902-CDS-M-pyrifera_M_contig99883:516..666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99883 517..666 -
1692278253.5562892-CDS-M-pyrifera_M_contig99883:516..6661692278253.5562892-CDS-M-pyrifera_M_contig99883:516..666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99883 517..666 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816916.225976-UTR-M-pyrifera_M_contig99883:666..6841622816916.225976-UTR-M-pyrifera_M_contig99883:666..684Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99883 667..684 -
1692278253.5664384-UTR-M-pyrifera_M_contig99883:666..6841692278253.5664384-UTR-M-pyrifera_M_contig99883:666..684Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99883 667..684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99883.22972.1prot_M-pyrifera_M_contig99883.22972.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99883 517..666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99883.22972.1

>prot_M-pyrifera_M_contig99883.22972.1 ID=prot_M-pyrifera_M_contig99883.22972.1|Name=mRNA_M-pyrifera_M_contig99883.22972.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
MSALLIDPNTNELNANGTMYVDSKGRRVFIDDTLEDGETIAFLVGIAGG*
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mRNA from alignment at M-pyrifera_M_contig99883:517..684-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99883.22972.1 ID=mRNA_M-pyrifera_M_contig99883.22972.1|Name=mRNA_M-pyrifera_M_contig99883.22972.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=168bp|location=Sequence derived from alignment at M-pyrifera_M_contig99883:517..684- (Macrocystis pyrifera P11B4 male)
GACAAGTACGGTGAGAAGATGTCGGCCTTGCTGATCGATCCGAACACGAA
CGAGTTGAACGCGAACGGCACCATGTACGTCGATTCAAAAGGCCGCCGCG
TGTTTATCGACGATACGCTCGAGGACGGCGAGACGATTGCGTTTCTCGTT
GGCATTGCCGGCGGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99883:517..684-

>mRNA_M-pyrifera_M_contig99883.22972.1 ID=mRNA_M-pyrifera_M_contig99883.22972.1|Name=mRNA_M-pyrifera_M_contig99883.22972.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig99883:517..684- (Macrocystis pyrifera P11B4 male)
ATGTCGGCCTTGCTGATCGATCCGAACACGAACGAGTTGAACGCGAACGG
CACCATGTACGTCGATTCAAAAGGCCGCCGCGTGTTTATCGACGATACGC
TCGAGGACGGCGAGACGATTGCGTTTCTCGTTGGCATTGCCGGCGGCTGA
ATGTCGGCCTTGCTGATCGATCCGAACACGAACGAGTTGAACGCGAACGG
CACCATGTACGTCGATTCAAAAGGCCGCCGCGTGTTTATCGACGATACGC
TCGAGGACGGCGAGACGATTGCGTTTCTCGTTGGCATTGCCGGCGGCTGA
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