mRNA_M-pyrifera_M_contig99359.22859.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99359.22859.1
Unique NamemRNA_M-pyrifera_M_contig99359.22859.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99359.22859.1 vs. uniprot
Match: A0A8J9VL50_BRALA (DIO3 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9VL50_BRALA)

HSP 1 Score: 55.8 bits (133), Expect = 5.500e-8
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 PPFRDAVEDWKGLQEEFSEVADFLCVYIEEAHPSDG 108
            PPFRDA+ D+  L E++  VADFL VYIEEAHPSDG
Sbjct:  131 PPFRDALSDFAVLAEDYRNVADFLLVYIEEAHPSDG 166
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BLAST of mRNA_M-pyrifera_M_contig99359.22859.1 vs. uniprot
Match: UPI0009E2712A (type I iodothyronine deiodinase-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E2712A)

HSP 1 Score: 53.9 bits (128), Expect = 2.630e-7
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 PPFRDAVEDWKGLQEEFSEVADFLCVYIEEAHPSDGMAMEWN 126
            P FR  V+++  +  EFS+VADFL VYIEEAHPSDG A + N
Sbjct:  122 PVFRTRVDEFLSIAREFSDVADFLAVYIEEAHPSDGWAFKNN 163
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BLAST of mRNA_M-pyrifera_M_contig99359.22859.1 vs. uniprot
Match: A0A6P4XYN8_BRABE (Iodothyronine deiodinase n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4XYN8_BRABE)

HSP 1 Score: 53.5 bits (127), Expect = 3.820e-7
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 PPFRDAVEDWKGLQEEFSEVADFLCVYIEEAHPSDG 108
            PPFRDA+ D+  L E++   A+FL VYIEEAHPSDG
Sbjct:  131 PPFRDALSDFAALAEDYRNAANFLLVYIEEAHPSDG 166
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BLAST of mRNA_M-pyrifera_M_contig99359.22859.1 vs. uniprot
Match: A0A6P5JLN1_PHACI (Iodothyronine deiodinase n=2 Tax=Metatheria TaxID=9263 RepID=A0A6P5JLN1_PHACI)

HSP 1 Score: 53.5 bits (127), Expect = 4.450e-7
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 PPFRDAVEDWKGLQEEFSEVADFLCVYIEEAHPSDGMAMEWNS 129
            PPF + +  +  L EEFS VADFL VYI+EAHPSDG A+  NS
Sbjct:  176 PPFTNQLPAFSKLVEEFSTVADFLLVYIDEAHPSDGWAVPGNS 218
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BLAST of mRNA_M-pyrifera_M_contig99359.22859.1 vs. uniprot
Match: C3ZLK4_BRAFL (Iodothyronine deiodinase n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZLK4_BRAFL)

HSP 1 Score: 53.1 bits (126), Expect = 6.100e-7
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 PPFRDAVEDWKGLQEEFSEVADFLCVYIEEAHPSDG 108
            PPFRDA+ D+  L +++  VA+FL VYIEEAHPSDG
Sbjct:  131 PPFRDALSDFAVLAQDYQNVANFLLVYIEEAHPSDG 166
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BLAST of mRNA_M-pyrifera_M_contig99359.22859.1 vs. uniprot
Match: A9J434_URSMA (Iodothyronine deiodinase (Fragment) n=2 Tax=Ursidae TaxID=9632 RepID=A9J434_URSMA)

HSP 1 Score: 51.6 bits (122), Expect = 8.340e-7
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 PPFRDAVEDWKGLQEEFSEVADFLCVYIEEAHPSDGMAMEWNS 129
            PPF   +  +  L EEFS VADFL VYI+EAHPSDG A+  +S
Sbjct:   46 PPFTSQLPAFSKLVEEFSSVADFLLVYIDEAHPSDGWAVPGDS 88
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BLAST of mRNA_M-pyrifera_M_contig99359.22859.1 vs. uniprot
Match: J7LIG6_SHEEP (Iodothyronine deiodinase (Fragment) n=1 Tax=Ovis aries TaxID=9940 RepID=J7LIG6_SHEEP)

HSP 1 Score: 52.0 bits (123), Expect = 8.750e-7
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 PPFRDAVEDWKGLQEEFSEVADFLCVYIEEAHPSDGMAMEWNS 129
            PPF + +  +  L EEFS VADFL VYI+EAHPSDG A+  +S
Sbjct:   60 PPFTNQLPAFSKLVEEFSSVADFLLVYIDEAHPSDGWAVXGDS 102
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BLAST of mRNA_M-pyrifera_M_contig99359.22859.1 vs. uniprot
Match: IOD2_HUMAN (Type II iodothyronine deiodinase n=75 Tax=Eutheria TaxID=9347 RepID=IOD2_HUMAN)

HSP 1 Score: 52.4 bits (124), Expect = 1.020e-6
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 PPFRDAVEDWKGLQEEFSEVADFLCVYIEEAHPSDGMAMEWNS 129
            PPF   +  ++ L EEFS VADFL VYI+EAHPSDG A+  +S
Sbjct:  134 PPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDS 176
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BLAST of mRNA_M-pyrifera_M_contig99359.22859.1 vs. uniprot
Match: A0A2B4SX22_STYPI (Iodothyronine deiodinase n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SX22_STYPI)

HSP 1 Score: 52.4 bits (124), Expect = 1.100e-6
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 PPFRDAVEDWKGLQEEFSEVADFLCVYIEEAHPSDGMAMEWN 126
            P FR  V ++  + +EFS+VADFL +Y+EEAHPSDG A E N
Sbjct:  174 PVFRARVGEFLSVVQEFSDVADFLTIYVEEAHPSDGWAFENN 215
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BLAST of mRNA_M-pyrifera_M_contig99359.22859.1 vs. uniprot
Match: A0A340Y1L5_LIPVE (Iodothyronine deiodinase n=4 Tax=Boreoeutheria TaxID=1437010 RepID=A0A340Y1L5_LIPVE)

HSP 1 Score: 52.0 bits (123), Expect = 1.370e-6
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 PPFRDAVEDWKGLQEEFSEVADFLCVYIEEAHPSDGMAMEWNS 129
            PPF + +  +  L EEFS VADFL VYI+EAHPSDG A+  +S
Sbjct:  134 PPFTNQLPAFSKLVEEFSSVADFLLVYIDEAHPSDGWAVPGDS 176
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99359.22859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J9VL50_BRALA5.500e-869.44DIO3 protein n=1 Tax=Branchiostoma lanceolatum Tax... [more]
UPI0009E2712A2.630e-759.52type I iodothyronine deiodinase-like n=1 Tax=Orbic... [more]
A0A6P4XYN8_BRABE3.820e-763.89Iodothyronine deiodinase n=1 Tax=Branchiostoma bel... [more]
A0A6P5JLN1_PHACI4.450e-760.47Iodothyronine deiodinase n=2 Tax=Metatheria TaxID=... [more]
C3ZLK4_BRAFL6.100e-763.89Iodothyronine deiodinase n=2 Tax=Branchiostoma flo... [more]
A9J434_URSMA8.340e-758.14Iodothyronine deiodinase (Fragment) n=2 Tax=Ursida... [more]
J7LIG6_SHEEP8.750e-758.14Iodothyronine deiodinase (Fragment) n=1 Tax=Ovis a... [more]
IOD2_HUMAN1.020e-658.14Type II iodothyronine deiodinase n=75 Tax=Eutheria... [more]
A0A2B4SX22_STYPI1.100e-657.14Iodothyronine deiodinase n=1 Tax=Stylophora pistil... [more]
A0A340Y1L5_LIPVE1.370e-658.14Iodothyronine deiodinase n=4 Tax=Boreoeutheria Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99359contigM-pyrifera_M_contig99359:457..585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816911.2333758-CDS-M-pyrifera_M_contig99359:456..5851622816911.2333758-CDS-M-pyrifera_M_contig99359:456..585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99359 457..585 +
1692278250.9026442-CDS-M-pyrifera_M_contig99359:456..5851692278250.9026442-CDS-M-pyrifera_M_contig99359:456..585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99359 457..585 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99359.22859.1prot_M-pyrifera_M_contig99359.22859.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99359 457..585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99359.22859.1

>prot_M-pyrifera_M_contig99359.22859.1 ID=prot_M-pyrifera_M_contig99359.22859.1|Name=mRNA_M-pyrifera_M_contig99359.22859.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=43bp
PPFRDAVEDWKGLQEEFSEVADFLCVYIEEAHPSDGMAMEWNS
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mRNA from alignment at M-pyrifera_M_contig99359:457..585+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99359.22859.1 ID=mRNA_M-pyrifera_M_contig99359.22859.1|Name=mRNA_M-pyrifera_M_contig99359.22859.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=129bp|location=Sequence derived from alignment at M-pyrifera_M_contig99359:457..585+ (Macrocystis pyrifera P11B4 male)
CCACCGTTCAGAGATGCGGTTGAAGATTGGAAGGGTCTTCAGGAGGAGTT
CTCGGAAGTGGCAGACTTCCTTTGTGTCTACATTGAAGAGGCGCACCCAA
GTGATGGTATGGCTATGGAGTGGAACTCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99359:457..585+

>mRNA_M-pyrifera_M_contig99359.22859.1 ID=mRNA_M-pyrifera_M_contig99359.22859.1|Name=mRNA_M-pyrifera_M_contig99359.22859.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig99359:457..585+ (Macrocystis pyrifera P11B4 male)
CCACCGTTCAGAGATGCGGTTGAAGATTGGAAGGGTCTTCAGGAGGAGTT
CTCGGAAGTGGCAGACTTCCTTTGTGTCTACATTGAAGAGGCGCACCCAA
GTGATGGTATGGCTATGGAGTGGAACTCTCCACCGTTCAGAGATGCGGTT
GAAGATTGGAAGGGTCTTCAGGAGGAGTTCTCGGAAGTGGCAGACTTCCT
TTGTGTCTACATTGAAGAGGCGCACCCAAGTGATGGTATGGCTATGGAGT
GGAACTCT
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