mRNA_M-pyrifera_M_contig98575.22696.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98575.22696.1
Unique NamemRNA_M-pyrifera_M_contig98575.22696.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig98575.22696.1 vs. uniprot
Match: A0A7S4HJI3_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HJI3_9EUKA)

HSP 1 Score: 110 bits (276), Expect = 2.170e-29
Identity = 55/105 (52.38%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    1 ALAVAMGAFGAHSLKNR-TQDPYMIKTWDTAAQYHMAHSVETIAALCLVTLSPRHPSIAGYFFSAGILLFSGSLYALVLSQVKALGAITPIGGMCMIIGWLSLAV 312
            A++VAMGAFGAH LK R + +P  + +W+TAA Y + HSV     LCL++ +PR   + GY  S GI LFSGS+Y LVL++ K LG +TPIGG+C+I  W+SLA+
Sbjct:   15 AISVAMGAFGAHGLKKRYSNNPQKVASWNTAAHYQLIHSV----VLCLLSFTPRTSPLTGYLLSTGITLFSGSIYLLVLTEWKLLGPVTPIGGLCLIASWISLAI 115          
BLAST of mRNA_M-pyrifera_M_contig98575.22696.1 vs. uniprot
Match: A0A067CZ45_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CZ45_SAPPC)

HSP 1 Score: 109 bits (273), Expect = 6.970e-29
Identity = 57/102 (55.88%), Postives = 72/102 (70.59%), Query Frame = 1
Query:    1 ALAVAMGAFGAHSLKNRTQDPYMIKTWDTAAQYHMAHSVETIAALCLVTLSPRHPSIAGYFFSAGILLFSGSLYALVLSQVKALGAITPIGGMCMIIGWLSL 306
            A AV +GAFGAH LK+R  DP ++KTWDT A YH+ HS+    AL  V  S R P++AG   S GI+ FSGSLYA+VL+  K+LG ITP+GG+  + GWLSL
Sbjct:   24 ATAVLLGAFGAHGLKSRVSDPKLLKTWDTGAHYHLVHSL----ALLAVPFS-RRPNLAGGLISTGIVFFSGSLYAIVLTDHKSLGMITPMGGLMFVAGWLSL 120          
BLAST of mRNA_M-pyrifera_M_contig98575.22696.1 vs. uniprot
Match: A0A6G0XE60_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XE60_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.990e-28
Identity = 57/102 (55.88%), Postives = 73/102 (71.57%), Query Frame = 1
Query:    1 ALAVAMGAFGAHSLKNRTQDPYMIKTWDTAAQYHMAHSVETIAALCLVTLSPRHPSIAGYFFSAGILLFSGSLYALVLSQVKALGAITPIGGMCMIIGWLSL 306
            A A+A GAFGAH+LKN  +D  ++KTW+T A YH+ HSV    AL  V  S R P++ G   + G+LLFSGSLY++VL+Q K LG ITPIGG+ MI GWL+L
Sbjct:   24 ATAIAFGAFGAHALKNYVKDEKLLKTWETGAHYHLLHSV----ALLAVPFS-RRPNLVGGLLTTGVLLFSGSLYSIVLTQKKNLGIITPIGGVAMIAGWLAL 120          
BLAST of mRNA_M-pyrifera_M_contig98575.22696.1 vs. uniprot
Match: A0A024UJM9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UJM9_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.990e-28
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 1
Query:    1 ALAVAMGAFGAHSLKNRTQDPYMIKTWDTAAQYHMAHSVETIAALCLVTLSPRHPSIAGYFFSAGILLFSGSLYALVLSQVKALGAITPIGGMCMIIGWLS 303
            A AVA GAFGAH+L++R ++P  IKTW+TA+ YH+ HSV    AL  V L+ R P++AG F +AGI+LFSGSLY LVLS    LG ITP GG+  I GWL+
Sbjct:   26 AAAVAFGAFGAHALQSRVKNPKRIKTWETASHYHLIHSV----ALLAVPLA-RRPNVAGGFLTAGIVLFSGSLYTLVLSDQAKLGIITPFGGLAFIAGWLA 121          
BLAST of mRNA_M-pyrifera_M_contig98575.22696.1 vs. uniprot
Match: A0A0F2LZ48_SPOSC (Membrane protein n=2 Tax=Sporothrix schenckii TaxID=29908 RepID=A0A0F2LZ48_SPOSC)

HSP 1 Score: 107 bits (268), Expect = 1.440e-27
Identity = 58/104 (55.77%), Postives = 72/104 (69.23%), Query Frame = 1
Query:    1 ALAVAMGAFGAHSLKNRTQDPYMIKTWDTAAQYHMAHSVETIAALCLVTLSPRHPSIAGYFFSAGILLFSGSLYALVLS--QVKALGAITPIGGMCMIIGWLSL 306
            A AVA+GAFGAH LKNR  DP  + TW TAA Y +AHSV  +AA         HP +A   F+ G+ LFSGS+YALVL   + KALG +TP+GG+C+I+GWLSL
Sbjct:   64 ATAVALGAFGAHGLKNRVSDPAKLATWSTAAHYQLAHSVAMLAAR-------GHP-VASSLFATGMTLFSGSIYALVLDPERFKALGPVTPVGGLCLILGWLSL 159          
BLAST of mRNA_M-pyrifera_M_contig98575.22696.1 vs. uniprot
Match: UPI0006450D0A (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006450D0A)

HSP 1 Score: 105 bits (262), Expect = 2.910e-27
Identity = 57/104 (54.81%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    1 ALAVAMGAFGAHSLKNRTQDPYMIKTWDTAAQYHMAHSVETIAALCLVTLSPRHPSIAGYFFSAGILLFSGSLYALVLSQVKALGAITPIGGMCMIIGWLSLAV 312
            ALA+  GAFG H LK+  +DP  + TW TAA YH+ HSV    AL LV  S +H +IAG     G +LFSGSLY L LS  K LGA+TP+GG+ MI GWL+LA+
Sbjct:   17 ALAICTGAFGGHGLKDHVKDPKKLDTWKTAANYHLIHSV----ALMLVPFS-KHHAIAGPLLLGGTVLFSGSLYVLTLSDKKVLGAVTPLGGLAMIGGWLALAI 115          
BLAST of mRNA_M-pyrifera_M_contig98575.22696.1 vs. uniprot
Match: A0A6N2D341_9DELT (DUF423 domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A6N2D341_9DELT)

HSP 1 Score: 105 bits (263), Expect = 3.050e-27
Identity = 55/102 (53.92%), Postives = 71/102 (69.61%), Query Frame = 1
Query:    1 ALAVAMGAFGAHSLKNRTQDPYMIKTWDTAAQYHMAHSVETIAALCLVTLSPRHPSIAGYFFSAGILLFSGSLYALVLSQVKALGAITPIGGMCMIIGWLSL 306
            AL VA+GAFGAH L+N  +DP ++ TW+TAA+YH+ H++    AL LV   P  P  AG+    G ++FSGSLY LVLS V+ LGAITP+GG  +I GWL L
Sbjct:   25 ALGVALGAFGAHGLRNLIEDPQLLVTWETAARYHVFHAL----ALGLVAAHPARPHRAGWLLLTGTVIFSGSLYLLVLSGVRWLGAITPLGGAALIAGWLIL 122          
BLAST of mRNA_M-pyrifera_M_contig98575.22696.1 vs. uniprot
Match: A0A225W8S8_9STRA (Membrane protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W8S8_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.080e-27
Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = 1
Query:    1 ALAVAMGAFGAHSLKNRTQDPYMIKTWDTAAQYHMAHSVETIAALCLVTLSPRHPSIAGYFFSAGILLFSGSLYALVLSQVKALGAITPIGGMCMIIGWLSL 306
            A AV +GAFGAH LKN  +DP ++K W+TAA Y + HSV     + LVT   + P +AG   + G LLFSGSLYA+ L+Q K LG +TPIGG+ ++ GWL+L
Sbjct:   22 ASAVLLGAFGAHGLKNHVKDPQLLKNWETAAHYQLIHSV-----VLLVTPLCKRPGLAGTLITTGTLLFSGSLYAMTLTQEKKLGIVTPIGGVAIVAGWLAL 118          
BLAST of mRNA_M-pyrifera_M_contig98575.22696.1 vs. uniprot
Match: A0A8K1CAR7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CAR7_PYTOL)

HSP 1 Score: 105 bits (262), Expect = 3.080e-27
Identity = 56/102 (54.90%), Postives = 71/102 (69.61%), Query Frame = 1
Query:    1 ALAVAMGAFGAHSLKNRTQDPYMIKTWDTAAQYHMAHSVETIAALCLVTLSPRHPSIAGYFFSAGILLFSGSLYALVLSQVKALGAITPIGGMCMIIGWLSL 306
            A AVA+GAFGAH L+ R +DP M+K W+TAA YH+ HSV  +AA     LS R P + G   + G LLFSGSLY +VL+  + LG ITPIGG+ +I GWL+L
Sbjct:   22 ATAVALGAFGAHGLQTRVKDPKMLKNWETAAHYHLIHSVVLLAA----PLSKR-PGLTGGLITTGTLLFSGSLYTMVLTNERKLGMITPIGGVAIIAGWLAL 118          
BLAST of mRNA_M-pyrifera_M_contig98575.22696.1 vs. uniprot
Match: A0A485KYZ3_9STRA (Aste57867_13786 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KYZ3_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.450e-27
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 1
Query:    1 ALAVAMGAFGAHSLKNRTQDPYMIKTWDTAAQYHMAHSVETIAALCLVTLSPRHPSIAGYFFSAGILLFSGSLYALVLSQVKALGAITPIGGMCMIIGWLSL 306
            A AV +GAFGAH L+ R +DP ++K WDTAA YH+ HS+    AL +V  + R P++ G   + GI+ FSGSLY LVL++ K LG ITP+GG+  I GWL+L
Sbjct:   26 ATAVVLGAFGAHGLQTRVKDPKLLKNWDTAAHYHLMHSI----ALLVVPFT-RRPNVVGGLLTTGIVFFSGSLYTLVLTEQKKLGMITPLGGLAFIAGWLAL 122          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98575.22696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4HJI3_9EUKA2.170e-2952.38Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A067CZ45_SAPPC6.970e-2955.88Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A6G0XE60_9STRA1.990e-2855.88Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024UJM9_9STRA2.990e-2857.43Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A0F2LZ48_SPOSC1.440e-2755.77Membrane protein n=2 Tax=Sporothrix schenckii TaxI... [more]
UPI0006450D0A2.910e-2754.81hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A6N2D341_9DELT3.050e-2753.92DUF423 domain-containing protein n=1 Tax=Deltaprot... [more]
A0A225W8S8_9STRA3.080e-2751.96Membrane protein n=1 Tax=Phytophthora megakarya Ta... [more]
A0A8K1CAR7_PYTOL3.080e-2754.90Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485KYZ3_9STRA3.450e-2751.96Aste57867_13786 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98575contigM-pyrifera_M_contig98575:12..697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue3.7e-21
Seed eggNOG ortholog112098.XP_008607205.1
Preferred nameTMEM256
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF423)
EggNOG OGsCOG2363@1,KOG3472@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size312
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98575.22696.1prot_M-pyrifera_M_contig98575.22696.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98575 12..682 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816903.0662086-CDS-M-pyrifera_M_contig98575:11..2051622816903.0662086-CDS-M-pyrifera_M_contig98575:11..205Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98575 12..205 -
1692278246.0956345-CDS-M-pyrifera_M_contig98575:11..2051692278246.0956345-CDS-M-pyrifera_M_contig98575:11..205Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98575 12..205 -
1622816903.0791879-CDS-M-pyrifera_M_contig98575:579..6821622816903.0791879-CDS-M-pyrifera_M_contig98575:579..682Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98575 580..682 -
1692278246.1177502-CDS-M-pyrifera_M_contig98575:579..6821692278246.1177502-CDS-M-pyrifera_M_contig98575:579..682Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98575 580..682 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816903.089986-UTR-M-pyrifera_M_contig98575:682..6971622816903.089986-UTR-M-pyrifera_M_contig98575:682..697Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig98575 683..697 -
1692278246.129997-UTR-M-pyrifera_M_contig98575:682..6971692278246.129997-UTR-M-pyrifera_M_contig98575:682..697Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig98575 683..697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98575.22696.1

>prot_M-pyrifera_M_contig98575.22696.1 ID=prot_M-pyrifera_M_contig98575.22696.1|Name=mRNA_M-pyrifera_M_contig98575.22696.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
MGAFGAHSLKNRTQDPYMIKTWDTAAQYHMAHSVETIAALCLVTLSPRHP
SIAGYFFSAGILLFSGSLYALVLSQVKALGAITPIGGMCMIIGWLSLAV
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mRNA from alignment at M-pyrifera_M_contig98575:12..697-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98575.22696.1 ID=mRNA_M-pyrifera_M_contig98575.22696.1|Name=mRNA_M-pyrifera_M_contig98575.22696.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=686bp|location=Sequence derived from alignment at M-pyrifera_M_contig98575:12..697- (Macrocystis pyrifera P11B4 male)
GCCCTTGCCGTGGCCATGGGTGCGTTTGGGGCACACTCCCTCAAGAACCG GACGCAGGACCCCTACATGATCAAGACGTGGGACACGGCGGCGCAGTATC ACATGGCCCACTCGGTTGGTAGGCACCACGGCTCTCTCTTGCCTGCAGGC GGCACGTCTATCCTTTGCTTCACTCTGTTGTTCTGTATTTGTGTGGTGGG GACCTTATAGGAGGCTTCTACATGGATGATCGGCAGTGCCGCATGCTGAT TGGAGGGCGTAGAAGCGAGGAGGAGGAGTGGGACATACTGCAATCGCTTT CTTTACTCTTCTCTGGGCTATTGGCGTGCTGGTTTCCTCCTTTCGCGCTA CTTTTTCTGCCCTCCCCTTGCCGAGGGAATGGCCGCTGTCTATTCGAAGC GATCTCATCCATTGCTCTGTAATTTTCCTGAAAACTTCAAAGAGCGATGG GCCTGTGGGTACTTGGGCGTATGTGACGTGGTGGCTGACAAGAAACGATT GCAGCTCTGTGCCTGGTCACCCTCTCGCCGCGCCACCCGTCCATTGCGGG CTACTTCTTCTCCGCAGGCATCCTTCTTTTCTCCGGCTCACTCTATGCCC TCGTTCTGAGCCAAGTGAAGGCCCTTGGGGCCATCACACCCATTGGAGGC ATGTGCATGATCATTGGCTGGCTGTCACTTGCGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98575:12..697-

>mRNA_M-pyrifera_M_contig98575.22696.1 ID=mRNA_M-pyrifera_M_contig98575.22696.1|Name=mRNA_M-pyrifera_M_contig98575.22696.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig98575:12..697- (Macrocystis pyrifera P11B4 male)
ATGGGTGCGTTTGGGGCACACTCCCTCAAGAACCGGACGCAGGACCCCTA
CATGATCAAGACGTGGGACACGGCGGCGCAGTATCACATGGCCCACTCGG
TTGATGGGTGCGTTTGGGGCACACTCCCTCAAGAACCGGACGCAGGACCC
CTACATGATCAAGACGTGGGACACGGCGGCGCAGTATCACATGGCCCACT
CGGTTGAAACGATTGCAGCTCTGTGCCTGGTCACCCTCTCGCCGCGCCAC
CCGTCCATTGCGGGCTACTTCTTCTCCGCAGGCATCCTTCTTTTCTCCGG
CTCACTCTATGCCCTCGTTCTGAGCCAAGTGAAGGCCCTTGGGGCCATCA
CACCCATTGGAGGCATGTGCATGATCATTGGCTGGCTGTCACTTGCGGTG
AAACGATTGCAGCTCTGTGCCTGGTCACCCTCTCGCCGCGCCACCCGTCC
ATTGCGGGCTACTTCTTCTCCGCAGGCATCCTTCTTTTCTCCGGCTCACT
CTATGCCCTCGTTCTGAGCCAAGTGAAGGCCCTTGGGGCCATCACACCCA
TTGGAGGCATGTGCATGATCATTGGCTGGCTGTCACTTGCGGTG
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