mRNA_M-pyrifera_M_contig98011.22572.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98011.22572.1
Unique NamemRNA_M-pyrifera_M_contig98011.22572.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig98011.22572.1 vs. uniprot
Match: A0A358FY61_9ACTN (Flagellar motor switch protein FliN n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358FY61_9ACTN)

HSP 1 Score: 117 bits (293), Expect = 2.430e-30
Identity = 57/94 (60.64%), Postives = 74/94 (78.72%), Query Frame = 1
Query:  121 FQMERRMDNDAAMGDGLLSLGVLREVPLEVSAELGHTRLSVAEILQLTIGSVIELDRTAGAPIDVVANGSLIARGEVVVIDDEYGIRITEIVGR 402
            F  E  +       DG+LS+GVLR VPLEV+AELG  ++++ EILQ   GS+IELDRTAG+P+DVV NGS++ARGEVVVI +EYG+R+TEI+GR
Sbjct:  110 FASEPHLTPTTGPSDGVLSIGVLRHVPLEVAAELGRAKVTMEEILQYGPGSIIELDRTAGSPVDVVVNGSMVARGEVVVIGEEYGVRVTEILGR 203          
BLAST of mRNA_M-pyrifera_M_contig98011.22572.1 vs. uniprot
Match: A0A4Q7NW53_9ACTN (Flagellar motor switch protein FliN/FliY n=1 Tax=Motilibacter rhizosphaerae TaxID=598652 RepID=A0A4Q7NW53_9ACTN)

HSP 1 Score: 105 bits (261), Expect = 4.400e-25
Identity = 52/79 (65.82%), Postives = 67/79 (84.81%), Query Frame = 1
Query:  178 LGVLREVPLEVSAELGHTRLSVAEILQLTIGSVIELDRTAGAPIDVVANGSLIARGEVVVIDDEYGIRITEIVGRVGDA 414
            L +LR+V +EV+AELG TR++V E+L LT GSV+ELDR AG+P D++ NG+LIARGEVVV+D+EYGIRITE+VG   DA
Sbjct:  168 LELLRDVVMEVTAELGRTRMTVRELLSLTPGSVVELDRAAGSPADLLVNGTLIARGEVVVVDEEYGIRITELVGPGADA 246          
BLAST of mRNA_M-pyrifera_M_contig98011.22572.1 vs. uniprot
Match: A0A094ITD5_9GAMM (Flagellar motor switch protein FliN n=1 Tax=Pseudidiomarina salinarum TaxID=435908 RepID=A0A094ITD5_9GAMM)

HSP 1 Score: 101 bits (251), Expect = 8.560e-25
Identity = 50/102 (49.02%), Postives = 75/102 (73.53%), Query Frame = 1
Query:   91 SAPSLDEDLPFQMERRMDNDAAMGDGLLSLGVLREVPLEVSAELGHTRLSVAEILQLTIGSVIELDRTAGAPIDVVANGSLIARGEVVVIDDEYGIRITEIV 396
            +AP+ D    F   + +DN AA G  +  L ++ ++P+++S ELG TR+++ ++L+L  GSV+ELD  AG P+D++ NG LIA+GEVVV+DD+YGIRITEIV
Sbjct:   28 AAPTSDSQKVF---KPLDNTAAAGGTMNDLDIIMDIPVKLSVELGRTRITIKQLLELAQGSVVELDGLAGEPMDILINGYLIAQGEVVVLDDKYGIRITEIV 126          
BLAST of mRNA_M-pyrifera_M_contig98011.22572.1 vs. uniprot
Match: A0A346XUG4_9ACTN (Flagellar motor switch protein FliN n=1 Tax=Euzebya pacifica TaxID=1608957 RepID=A0A346XUG4_9ACTN)

HSP 1 Score: 105 bits (262), Expect = 1.840e-24
Identity = 53/88 (60.23%), Postives = 70/88 (79.55%), Query Frame = 1
Query:  151 AAMGDGLLSLGVLREVPLEVSAELGHTRLSVAEILQLTIGSVIELDRTAGAPIDVVANGSLIARGEVVVIDDEYGIRITEIVGRVGDA 414
            A  G G  S+ +L +V + V+AELG T+L+V ++L LT GS++ELDR AG+P+DVV NG+LIARGEVVVID+E+GIRITEI+G V  A
Sbjct:  256 ALPGQGQSSMSLLGDVEMGVTAELGRTQLTVRDVLNLTPGSIVELDRAAGSPVDVVVNGTLIARGEVVVIDEEFGIRITEILGAVEQA 343          
BLAST of mRNA_M-pyrifera_M_contig98011.22572.1 vs. uniprot
Match: UPI00196B79E3 (flagellar motor switch protein FliN n=1 Tax=Euzebya rosea TaxID=2052804 RepID=UPI00196B79E3)

HSP 1 Score: 105 bits (262), Expect = 2.000e-24
Identity = 53/88 (60.23%), Postives = 70/88 (79.55%), Query Frame = 1
Query:  151 AAMGDGLLSLGVLREVPLEVSAELGHTRLSVAEILQLTIGSVIELDRTAGAPIDVVANGSLIARGEVVVIDDEYGIRITEIVGRVGDA 414
            A  G G  S+ +L +V + V+AELG T+L+V ++L LT GS++ELDR AG+P+DVV NG+LIARGEVVVID+E+GIRITEI+G V  A
Sbjct:  262 ALPGQGQSSMSLLGDVEMGVTAELGRTQLTVRDVLNLTPGSIVELDRAAGSPVDVVVNGTLIARGEVVVIDEEFGIRITEILGAVEQA 349          
BLAST of mRNA_M-pyrifera_M_contig98011.22572.1 vs. uniprot
Match: U5WE98_9ACTN (Flagellar motor switch protein FliN n=6 Tax=Micromonosporaceae TaxID=28056 RepID=U5WE98_9ACTN)

HSP 1 Score: 102 bits (255), Expect = 3.280e-24
Identity = 56/106 (52.83%), Postives = 74/106 (69.81%), Query Frame = 1
Query:   79 LVTASAPSLDEDLPFQMERRMDNDAAMGDGLLSLGVLREVPLEVSAELGHTRLSVAEILQLTIGSVIELDRTAGAPIDVVANGSLIARGEVVVIDDEYGIRITEIV 396
            L  A +P   +  P  + RR D+   M  GL    +L +V +EVSAELG TR+SV E+L LT G+++ELDR AG+P D++ NG LIARGEVVVID+ +GIRITEI+
Sbjct:  140 LAMALSPWPSDGAPAGVARRGDSAGPMRGGL---DMLHDVEMEVSAELGRTRMSVRELLSLTPGAIVELDRAAGSPADLLVNGRLIARGEVVVIDENFGIRITEII 242          
BLAST of mRNA_M-pyrifera_M_contig98011.22572.1 vs. uniprot
Match: A0A0D8HFH8_9ACTN (Flagellar motor switch protein FliN n=1 Tax=Acidithrix ferrooxidans TaxID=1280514 RepID=A0A0D8HFH8_9ACTN)

HSP 1 Score: 97.4 bits (241), Expect = 1.350e-23
Identity = 50/103 (48.54%), Postives = 71/103 (68.93%), Query Frame = 1
Query:  106 DEDLPFQMERRMDNDAAMGDGLLS----LGVLREVPLEVSAELGHTRLSVAEILQLTIGSVIELDRTAGAPIDVVANGSLIARGEVVVIDDEYGIRITEIVGR 402
            D    F    +  N+  +G  L S    LGV++ V +E++ ELG  ++SV E+L LT G V+ELDR A +P+DV+ NG+L+AR EVVV++DE+GIRITE+VGR
Sbjct:    3 DISTDFSDTNQNGNENFLGKRLESDLGPLGVIQNVEMEITVELGRAKMSVRELLSLTSGDVVELDRLATSPVDVLVNGTLVARAEVVVVEDEFGIRITEVVGR 105          
BLAST of mRNA_M-pyrifera_M_contig98011.22572.1 vs. uniprot
Match: A0A525C0N6_9GAMM (Flagellar motor switch protein FliN n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A525C0N6_9GAMM)

HSP 1 Score: 98.2 bits (243), Expect = 1.580e-23
Identity = 47/110 (42.73%), Postives = 74/110 (67.27%), Query Frame = 1
Query:   85 TASAPSLDED------LPFQMERRMDNDAAMGDGLLSLGVLREVPLEVSAELGHTRLSVAEILQLTIGSVIELDRTAGAPIDVVANGSLIARGEVVVIDDEYGIRITEIV 396
            TA    +D D       P  ME  +    A GD  ++L V+ ++P+++S E+G TR+S+  +LQL  GS++ELDR AG P+DV+ NG+LIA GEVVV+++ +GIR+T+++
Sbjct:   23 TAEGDEIDPDEIMANVSPAPMENLVSETVAAGDEDVNLNVILDIPVDLSMEIGRTRISIRNLLQLNQGSIVELDRLAGEPLDVMVNGTLIAHGEVVVVNERFGIRLTDVI 132          
BLAST of mRNA_M-pyrifera_M_contig98011.22572.1 vs. uniprot
Match: A0A420XTQ3_9ACTN (Flagellar motor switch protein FliN/FliY n=1 Tax=Motilibacter peucedani TaxID=598650 RepID=A0A420XTQ3_9ACTN)

HSP 1 Score: 100 bits (250), Expect = 1.840e-23
Identity = 49/80 (61.25%), Postives = 66/80 (82.50%), Query Frame = 1
Query:  160 GDGLLSLGVLREVPLEVSAELGHTRLSVAEILQLTIGSVIELDRTAGAPIDVVANGSLIARGEVVVIDDEYGIRITEIVG 399
            G     L +LR+V +EV+AELG TR++V E+L L+ G+V+ELDR AG+P D++ NG+LIARGEVVV+D+EYGIRITE+VG
Sbjct:  162 GGRAAGLELLRDVEMEVTAELGRTRMTVRELLSLSPGAVVELDRAAGSPADLLVNGTLIARGEVVVVDEEYGIRITELVG 241          
BLAST of mRNA_M-pyrifera_M_contig98011.22572.1 vs. uniprot
Match: UPI001BC9287F (flagellar motor switch protein FliN n=1 Tax=Bacillus sp. FJAT-29953 TaxID=1895007 RepID=UPI001BC9287F)

HSP 1 Score: 97.1 bits (240), Expect = 2.660e-23
Identity = 48/102 (47.06%), Postives = 74/102 (72.55%), Query Frame = 1
Query:   97 PSLDEDLPFQMERRMDNDAAMGDGLLSLGVLREVPLEVSAELGHTRLSVAEILQLTIGSVIELDRTAGAPIDVVANGSLIARGEVVVIDDEYGIRITEIVGR 402
            P + +DLP + ++R  +D+      ++L +L ++ LE+  ELG T+  + EIL+LT GS+IELDR +G P+DV+ NG ++A+GEVVVIDD +GIRITEI+ +
Sbjct:   25 PFIFQDLPDEPQKRETDDS------VNLDLLMDISLELVVELGRTKKKINEILELTQGSIIELDRVSGEPVDVLINGKIVAKGEVVVIDDYFGIRITEILNK 120          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98011.22572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A358FY61_9ACTN2.430e-3060.64Flagellar motor switch protein FliN n=1 Tax=Acidim... [more]
A0A4Q7NW53_9ACTN4.400e-2565.82Flagellar motor switch protein FliN/FliY n=1 Tax=M... [more]
A0A094ITD5_9GAMM8.560e-2549.02Flagellar motor switch protein FliN n=1 Tax=Pseudi... [more]
A0A346XUG4_9ACTN1.840e-2460.23Flagellar motor switch protein FliN n=1 Tax=Euzeby... [more]
UPI00196B79E32.000e-2460.23flagellar motor switch protein FliN n=1 Tax=Euzeby... [more]
U5WE98_9ACTN3.280e-2452.83Flagellar motor switch protein FliN n=6 Tax=Microm... [more]
A0A0D8HFH8_9ACTN1.350e-2348.54Flagellar motor switch protein FliN n=1 Tax=Acidit... [more]
A0A525C0N6_9GAMM1.580e-2342.73Flagellar motor switch protein FliN n=1 Tax=Gammap... [more]
A0A420XTQ3_9ACTN1.840e-2361.25Flagellar motor switch protein FliN/FliY n=1 Tax=M... [more]
UPI001BC9287F2.660e-2347.06flagellar motor switch protein FliN n=1 Tax=Bacill... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98011contigM-pyrifera_M_contig98011:73..492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score100.9
Seed ortholog evalue5e-19
Seed eggNOG ortholog1246995.AFR_40505
Preferred namefliN
KEGG koko:K02417
KEGG TC3.A.6.2,3.A.6.3
KEGG Pathwayko02030,ko02040,map02030,map02040
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Type III flagellar switch regulator (C-ring) FliN C-term
EggNOG OGs2IGHQ@201174,4DDPV@85008,COG1886@1,COG1886@2
COG Functional cat.N
Best tax levelMicromonosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02035,ko02044
Exons1
Model size420
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816897.566275-CDS-M-pyrifera_M_contig98011:72..4921622816897.566275-CDS-M-pyrifera_M_contig98011:72..492Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98011 73..492 -
1692278243.0828664-CDS-M-pyrifera_M_contig98011:72..4921692278243.0828664-CDS-M-pyrifera_M_contig98011:72..492Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98011 73..492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98011.22572.1prot_M-pyrifera_M_contig98011.22572.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98011 73..492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98011.22572.1

>prot_M-pyrifera_M_contig98011.22572.1 ID=prot_M-pyrifera_M_contig98011.22572.1|Name=mRNA_M-pyrifera_M_contig98011.22572.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
VGQGAPGAASGSVLLVAGPNGPLLVGLVTASAPSLDEDLPFQMERRMDND
AAMGDGLLSLGVLREVPLEVSAELGHTRLSVAEILQLTIGSVIELDRTAG
APIDVVANGSLIARGEVVVIDDEYGIRITEIVGRVGDAI*
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mRNA from alignment at M-pyrifera_M_contig98011:73..492-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98011.22572.1 ID=mRNA_M-pyrifera_M_contig98011.22572.1|Name=mRNA_M-pyrifera_M_contig98011.22572.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig98011:73..492- (Macrocystis pyrifera P11B4 male)
GTGGGACAGGGCGCCCCCGGGGCCGCGAGCGGCTCCGTGCTCCTCGTCGC CGGACCGAACGGACCGCTCCTCGTCGGGCTCGTGACGGCCTCTGCGCCCT CGTTGGACGAAGACCTTCCGTTCCAGATGGAACGACGCATGGACAACGAC GCCGCCATGGGTGACGGCCTGCTCTCCCTCGGCGTGTTGCGCGAGGTTCC CCTCGAAGTGAGCGCGGAACTCGGTCACACCCGACTTTCGGTCGCCGAGA TCCTCCAGCTCACGATCGGATCGGTCATCGAGCTCGACCGTACGGCCGGC GCCCCGATCGACGTGGTCGCCAACGGCTCCCTGATCGCCCGTGGCGAGGT CGTCGTGATCGACGACGAATACGGCATCCGCATCACCGAGATCGTCGGTC GGGTCGGCGACGCGATTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98011:73..492-

>mRNA_M-pyrifera_M_contig98011.22572.1 ID=mRNA_M-pyrifera_M_contig98011.22572.1|Name=mRNA_M-pyrifera_M_contig98011.22572.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig98011:73..492- (Macrocystis pyrifera P11B4 male)
GTGGGACAGGGCGCCCCCGGGGCCGCGAGCGGCTCCGTGCTCCTCGTCGC
CGGACCGAACGGACCGCTCCTCGTCGGGCTCGTGACGGCCTCTGCGCCCT
CGTTGGACGAAGACCTTCCGTTCCAGATGGAACGACGCATGGACAACGAC
GCCGCCATGGGTGACGGCCTGCTCTCCCTCGGCGTGTTGCGCGAGGTTCC
CCTCGAAGTGAGCGCGGAACTCGGTCACACCCGACTTTCGGTCGCCGAGA
TCCTCCAGCTCACGATCGGATCGGTCATCGAGCTCGACCGTACGGCCGGC
GCCCCGATCGACGTGGTCGCCAACGGCTCCCTGATCGCCCGTGGCGAGGT
CGTCGTGATCGACGACGAATACGGCATCCGCATCACCGAGATCGTCGGTC
GGGTCGGCGACGCGATTTGAGTGGGACAGGGCGCCCCCGGGGCCGCGAGC
GGCTCCGTGCTCCTCGTCGCCGGACCGAACGGACCGCTCCTCGTCGGGCT
CGTGACGGCCTCTGCGCCCTCGTTGGACGAAGACCTTCCGTTCCAGATGG
AACGACGCATGGACAACGACGCCGCCATGGGTGACGGCCTGCTCTCCCTC
GGCGTGTTGCGCGAGGTTCCCCTCGAAGTGAGCGCGGAACTCGGTCACAC
CCGACTTTCGGTCGCCGAGATCCTCCAGCTCACGATCGGATCGGTCATCG
AGCTCGACCGTACGGCCGGCGCCCCGATCGACGTGGTCGCCAACGGCTCC
CTGATCGCCCGTGGCGAGGTCGTCGTGATCGACGACGAATACGGCATCCG
CATCACCGAGATCGTCGGTCGGGTCGGCGACGCGATTTGA
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