mRNA_M-pyrifera_M_contig973.22405.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig973.22405.1
Unique NamemRNA_M-pyrifera_M_contig973.22405.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig973.22405.1 vs. uniprot
Match: D7G3P1_ECTSI (Similar to Mucin-1 (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P1_ECTSI)

HSP 1 Score: 402 bits (1032), Expect = 1.680e-128
Identity = 198/295 (67.12%), Postives = 240/295 (81.36%), Query Frame = 1
Query:    1 VVFPLLMFVYVNRIVWSRLCTERSPVLFTPHPNARRGCCLFNACRDICGAWRTGSSMLSWADKGQWVSKNDEAVDLDSRKFRIGFEPLFVDYTQRGTLYVTFLLFEWIAFGLIAGLVTNGTIQTSLICLIYVMDLIILICLQPFSNSIIQCVTTMTVLADALTLGLMVYASVLEPEDSVDSDKLDLIYTGALLIQQTLTIIFFVVPLYLDAFITVIGTICTKAGELLKGKTKKSKTLIRGSWDETMWIFFALVRENFIGCVKSTWKGPSYNPTANAQRVLRRRSTLLHRESRGGK 885
            +VFP+LMF+YV+RIVWSR+  + SP+ + P+PNA +GC LF AC   C AW +GSSM  WADKGQW SKN+E VDLDSRKFRIGFEPLFVDYTQ+GTLYVTFLLFEW++FGLIAG VTNGTIQT  +C IYV+D +IL+CL+PFSNSIIQC TTMTVLADA+TLGLM YA+ LEP+D  D+D+L+L+Y GALL+Q TL I+FFV+PLYLDAFIT++GT+C K  +L KG T K K  I+GS  ET  IF ALVRENF+GCVKSTW+GP+YNP      + RRRS+LL  E + G+
Sbjct:  722 IVFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKGCFLFKACGGFCKAWTSGSSMFEWADKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGALLVQ-TLAILFFVIPLYLDAFITIVGTLCKKCSQLAKGTTSKFKAPIKGSSSETASIFCALVRENFVGCVKSTWRGPTYNPVQTE--LQRRRSSLLLPEFQEGQ 1013          
BLAST of mRNA_M-pyrifera_M_contig973.22405.1 vs. uniprot
Match: A0A6H5LAH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAH5_9PHAE)

HSP 1 Score: 343 bits (881), Expect = 6.220e-105
Identity = 176/297 (59.26%), Postives = 214/297 (72.05%), Query Frame = 1
Query:    1 VVFPLLMFVYVNRIVWSRLCTERSPVLFTPHPNARRGCCLFNACRDICGAWRTGSSMLSWADKGQWVSKNDEAVDLDSRKFRIGFEPLFVDYTQRGTLYVTFLLFEWIAFGLIAGLVTNGTIQTSLICLIYVMDLIILICLQPFSNSIIQCVTTMTVLADALTLGLMVYASVLEPEDSVDSDKLDLIYTGALLIQ---------------------------------QTLTIIFFVVPLYLDAFITVIGTICTKAGELLKGKT-------KKSKTLIRGSWDETMWIFFALVRENF 771
            +VFP+LMF+YV+RIVWSR+  + SP+ + P+PNA +GC LF AC   C AW +GSSM  WA+KGQW SKN+E VDLDSRKFRIGFEPLFVDYTQ+GTLYVTFLLFEW++FGLIAG VTNGTIQT  +C IYV+D +IL+CL+PFSNSIIQC TTMTVLAD +TLGLM YA+ LEP+D  D+D+L+L+Y GAL +Q                                 QTL I+FFV+PLYLDAFIT+IG +C K  +L KG T       +K++  I+GS  ET  IFFALVRENF
Sbjct: 1045 IVFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKGCFLFKACGGFCKAWTSGSSMFEWAEKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWMSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADTITLGLMFYATFLEPDDDDDADRLELVYAGALSVQAWFRVVCDFLDASPPARPPVLLVAGAVSLPTSAQTLAILFFVIPLYLDAFITIIGALCKKCSQLAKGTTSKFKARWRKNRAPIKGSSSETASIFFALVRENF 1341          
BLAST of mRNA_M-pyrifera_M_contig973.22405.1 vs. uniprot
Match: D8LIK9_ECTSI (Beta strand repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK9_ECTSI)

HSP 1 Score: 272 bits (695), Expect = 2.640e-79
Identity = 143/279 (51.25%), Postives = 189/279 (67.74%), Query Frame = 1
Query:    4 VFPLLMFVYVNRIVWSRLCTERSPVLFTPH---PNARRGCCLFNACRDICGAWRTGSSMLSWADKGQWVSKNDEAVDLDSRKFRIGFEPLFVDYTQRGTLYVTFLLFEWIAFGLIAGLVTNGTIQTSLICLIYVMDLIILICLQPFSNSIIQCVTTMTVLADALTLGLMVYASVLEPEDSVDSDKLDLIYTGALLIQQTLTIIFFVVPLYLDAFITVIGTICTKAGELLKGKT--KKSKTLIRGSWDETMWIFFALVRENFIGCVKSTWKGPSYNPTAN 825
            +FP+ +  YV RIVWSR+  +  PV FT        R+ C   + CR     WR G S+  WADKG WVS  DE VDL+SRKFRIGFEPLFVD+T+ G +Y+ FLLF+W A G+IAGLVTNGT+QT+ + +IY++D+ +L  L+PFSNS++Q V T+ V ADALTLG+MV+ASVL+P+   D  KLD IY G +LIQ TL I    +P+Y D FI +   I  KA +L +G+   ++ K+ I+GSW E+  IF  LVRENFIGCVK +  GP   P ++
Sbjct: 1177 IFPIFLMFYVGRIVWSRVKPQEGPVTFTKGLAPEEGRKRCWCVSLCRGFRDGWRNGHSIFEWADKGAWVSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYIIFLLFKWFALGIIAGLVTNGTVQTASLAVIYLVDIALLCKLRPFSNSVVQWVETVLVTADALTLGMMVWASVLDPDMDADKRKLDGIYAGCMLIQ-TLGIFLLTIPIYADTFIVIFFQIRHKASKLWRGERTPREQKSDIKGSWGESCGIFCVLVRENFIGCVKESVHGPRRKPRSS 1454          
BLAST of mRNA_M-pyrifera_M_contig973.22405.1 vs. uniprot
Match: A0A6H5JTC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC8_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 1.590e-78
Identity = 136/279 (48.75%), Postives = 180/279 (64.52%), Query Frame = 1
Query:   28 YVNRIVWSRLCTERSPVLFTP-----------HPNARRGCCLFNACRDICGAWRTGSSMLSWADKGQWVSKNDEAVDLDSRKFRIGFEPLFVDYTQRGTLYVTFLLFEWIAFGLIAGLVTNGTIQTSLICLIYVMDLIILICLQPFSNSIIQCVTTMTVLADALTLGLMVYASVLEPEDSVDSDKLDLIYTGALLIQQTLTIIFFVVPLYLDAFITVIGTICTKAGELLKGKT--KKSKTLIRGSWDETMWIFFALVRENFIGCVKSTWKGPSYNPTAN 825
            YV RIVWSR+  +  PV F                 R+ C     C+     WR G S+  WADKG WVS  DE VDLDSRKFRIGFEPLFVD+T+ G +Y+ FL+F+W A  +IAGLVTNGT+QT+ + +IY++D+ +L  L+PFSNS++Q V T+ V ADALTL LMV+AS L+P++  D  KLD IY G +L+Q TL II   +P+Y D F+ +   I  KA +L +G+   +  K+ I+GSW E   IF  LVRENFIGCVK + +GP   P ++
Sbjct:    3 YVGRIVWSRVKPQEGPVTFDKGLAPAGGDGXXXXXGRKRCWCVLLCKGFRDGWRNGHSVFEWADKGAWVSLKDEKVDLDSRKFRIGFEPLFVDFTKEGAVYIIFLIFKWFALAVIAGLVTNGTVQTASLAVIYLVDVALLCMLRPFSNSVVQWVETLLVTADALTLALMVWASALDPDEDGDKRKLDNIYAGCMLVQ-TLGIILLTIPIYADTFVVLFSQIRQKASKLWRGERTPRAEKSDIKGSWGEACGIFCVLVRENFIGCVKESVQGPRRKPRSS 280          
BLAST of mRNA_M-pyrifera_M_contig973.22405.1 vs. uniprot
Match: D8LLG6_ECTSI (Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG6_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 2.960e-28
Identity = 88/282 (31.21%), Postives = 144/282 (51.06%), Query Frame = 1
Query:    1 VVFPLLMFVYVNRIVWSRLCTERSPVLFTPHPNARRGC---CLFNACRDICGAWRTGSSMLSWADKGQW--VSKNDEAVDLDSRKFRIGFEPLFVDYTQRGTLYVTFLLFEWIAFGLIAGLVTNGTIQTSLICLIYVMDLIILICLQPFSNSIIQCVTTMTVLADALTLGLMVYASVLEPEDSVDSDKLDLIYTGALLIQQTLTIIFFVVPLYLDAFITVIGTICT-------KAGEL-LKGKTKKSKTLIRGSWDETMWI--FFALVRENFIGCVKSTWKG 801
            V++PLLMF  V R ++ R+  +   +  T   +   G    C          +W    S+ SWADKGQW  V   +  +  +   FRIGFEP+FVDYT+RGT ++   L EW +  L+  ++ N  +Q  L C +     +IL+CL+PF+NS+I  +    V  DA++ GL+  A++     S  +D        A+ + Q +++   V+P+YLDA   V+G I         K G+  LKG++ +++  IR ++    W   + A++R N   C + T +G
Sbjct: 1617 VLYPLLMFATVVRTLFVRVRPDELLIFKTYDEDGTNGNAPNCRGGFLSHFKSSWAENYSLFSWADKGQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSNVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVAIDAVSTGLLAVAALKWEGTSRATDV-----NSAVGVLQIVSLCALVIPVYLDAVTIVMGAIRNRIRKALGKTGQQQLKGESPEARDYIR-TFTRRQWCGTWCAMLRHNVFACARDTREG 1892          
BLAST of mRNA_M-pyrifera_M_contig973.22405.1 vs. uniprot
Match: A0A6H5JD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD90_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.000e-27
Identity = 89/286 (31.12%), Postives = 142/286 (49.65%), Query Frame = 1
Query:    1 VVFPLLMFVYVNRIVWSRLCTERSPVLFTPH--------PNARRGCCLFNACRDICGAWRTGSSMLSWADKGQW--VSKNDEAVDLDSRKFRIGFEPLFVDYTQRGTLYVTFLLFEWIAFGLIAGLVTNGTIQTSLICLIYVMDLIILICLQPFSNSIIQCVTTMTVLADALTLGLMVYASVLEPEDSVDSDKLDLIYTGALLIQQTLTIIFFVVPLYLDAFITVIGTI-------CTKAGELLKGKTKKSKTLIRGSWDETMWI--FFALVRENFIGCVKSTWKG 801
            V++PLLMF  V R ++ R+  +   +  T          PN R G            +W    S+ SWADKGQW  V   +  +  +   FRIGFEP+FVDYT+RGT ++   L EW +  L+  ++ N  +Q  L C +     +IL+CL+PF+NS+I  +    V  DA+  GL+  A++     S  +D        A+ + Q +++   V+P+YLDA   V+G I         K G+ L G++ +++  IR ++    W   + A++R N   C + T  G
Sbjct: 1658 VLYPLLMFATVVRTLFVRVRPDELLIFKTYDEDGTNGNTPNGRGG-----FLSRFKSSWAENYSLFSWADKGQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSYVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVAIDAVCTGLLAVAALKWEGTSRATDV-----NSAVGVLQIVSLCALVIPVYLDAVTIVMGAIRKRIRKALGKTGQQLTGESPEARDYIR-TFTRRQWCGTWCAMLRHNVFACARDTRDG 1932          
BLAST of mRNA_M-pyrifera_M_contig973.22405.1 vs. uniprot
Match: D7FWS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS4_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 1.460e-26
Identity = 89/281 (31.67%), Postives = 141/281 (50.18%), Query Frame = 1
Query:    1 VVFPLLMFVYVNRIVWSRLCTERSPVLFTPHPNARRGCCLFNA---CRDICGAWRTGSSMLSWADKGQW--VSKNDEAVDLDSRKFRIGFEPLFVDYTQRGTLYVTFLLFEWIAFGLIAGLVTNGTIQTSLICLIYVMDLIILICLQPFSNSIIQCVTTMTVLADALTLGLMVYASVLEPEDSVDSDKLDLIYTGALLIQQTLTIIFFVVPLYLDAFITVIGTICT-------KAGELLKGKTKKSKTLIRGSWDETMWI--FFALVRENFIGCVKSTWKG 801
            V++PLLMFV V R +  R+      +  T   +   G     A         +W    S+ SWADKGQW  V   D  V  +   FRIGFEP+FVDYT+RGT ++   L EW AF  +  ++ N  +Q  L C ++ +   IL+ L+PF+NS+I  +       DA+++G+   AS L  E +  +  L+     ++++ Q L++   V+P+YLDA   V+G I         K G  L  + ++++  IR S+    W   +  ++R N   C + T +G
Sbjct: 1436 VLYPLLMFVTVFRTLLVRVRPNVLLIFKTYAEDGTNGDAPSRAGGLLSRFKSSWAENYSLFSWADKGQWETVQTPDRQVSREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWAAFAFVGVMIENSVVQLVLFCGLHSVMFFILMFLKPFANSVINNIEACVTAIDAISMGVFA-ASALWWEGTNRAAHLN----TSVVVLQLLSLFALVIPVYLDAVTIVMGAIRNRIRKALGKTGHELTDEEREARHYIR-SYTRRQWCGTWCTMLRHNVFACARDTSEG 1710          
BLAST of mRNA_M-pyrifera_M_contig973.22405.1 vs. uniprot
Match: A0A6H5JTJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ3_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 6.230e-24
Identity = 71/222 (31.98%), Postives = 116/222 (52.25%), Query Frame = 1
Query:  163 SSMLSWADKGQW--VSKNDEAVDLDSRKFRIGFEPLFVDYTQRGTLYVTFLLFEWIAFGLIAGLVTNGTIQTSLICLIYVMDLIILICLQPFSNSIIQCVTTMTVLADALTLGLMVYASVLEPEDSVDSDKLDLIYTGALLIQQTLTIIFFVVPLYLDAFITVIGTICTKAGELL---KGKTKKSKTLIRGS----WDETMWIFFALVRENFIGCVKSTWKG 801
            SS+ +WADKG W  V   DE    D+  FRIGFEPL+ D+TQ G+ +  + L EW     IA LV N  +Q  L C ++ M  I+L+  +PF+NS++  +  + +L DA+ +G++  ++      +  +D++D++    +++ Q L I   VVPLY+D  + V G I  + G +        +  +  I       W  T   +F +V  N   CV+ T +G
Sbjct:  415 SSLFAWADKGHWNTVQTADEDARRDADWFRIGFEPLYADFTQAGSWFTVYTLIEWATLACIAVLVDNSAVQCGLFCALHSMTFILLVVCKPFANSVLNTMGAIVMLTDAVCMGMLALSAGTFRMTAA-ADRIDIV----VMVAQHLCIAVLVVPLYVDTLLLVWGAIRNRRGPVKTRDNAAQRAEREFINRRTLRLWGRT---WFNMVGSNVFACVRDTREG 628          
BLAST of mRNA_M-pyrifera_M_contig973.22405.1 vs. uniprot
Match: D8LN93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN93_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.110e-23
Identity = 82/292 (28.08%), Postives = 141/292 (48.29%), Query Frame = 1
Query:    1 VVFPLLMFVYVNRIVWSRLCTERSPVLFTPHP---------NARRGCCLFNAC--RDICGAWRTGSSMLSWADKGQW--VSKNDEAVDLDSRKFRIGFEPLFVDYTQRGTLYVTFLLFEWIAFGLIAGLVTNGTIQTSLICLIYVMDLIILICLQPFSNSIIQCVTTMTVLADALTLGLMVYASVLEPEDSVDSDKLDLIYTGALLIQQTLTIIFFVVPLYLDAFITVIGTI-------CTKAGELLKGKTKKSKTL-----IRGSWDETMWIFFALVRENFIGCVKSTWKG 801
            V +P+LMFV V R  + R+    + ++FTP           +A  G    +A     +   W    S+ +WA+KG W     ++E    + + FRIGFEPLFVD+T+ G  +V F L EW A G I  L+    +Q SL C ++ +  ++L+  +PF+NS+I  +    V  DA+ + L+   S    E +  + K+D      +++ Q   +   ++P+Y+D  + +IG I        T   + ++ + +K + L     IR SW  T   +  ++ +N   C   T +G
Sbjct: 1077 VFYPILMFVAVLRTFFVRV-RPNTLIVFTPKEADDDTGDAGDAEEGQRARSASFLSKVRAGWEEDHSLFAWANKGTWETAETDNEGTRREGQWFRIGFEPLFVDFTKSGAWFVAFTLVEWAALGCIGALIDESVLQLSLFCALHTLSFLLLVVFRPFANSVINAMGAGLVGIDAVCMALLA-VSASRWEGTAAAGKVD----SVVMLLQLFALCALIIPIYIDTSLILIGAIRSRLQKSTTTTPQHVRTEAEKEEDLFVRHFIRRSWPRT---WCTMLGKNIFACASDTREG 1359          
BLAST of mRNA_M-pyrifera_M_contig973.22405.1 vs. uniprot
Match: A0A6H5J9C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C2_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 4.590e-22
Identity = 71/222 (31.98%), Postives = 117/222 (52.70%), Query Frame = 1
Query:  166 SMLSWADKGQWVSKNDEAVDLDSRK---FRIGFEPLFVDYTQRGTLYVTFLLFEWIAFGLIAGLVTNGTIQTSLICLIYVMDLIILICLQPFSNSIIQCVTTMTVLADALTLGLMVYASVLEPEDSVDSDKLDLIYTGALLIQQTLTIIFFVVPLYLDAFITVIGTICTKAG-------ELLKGKTKKSKTLIRGSWDETMWIFFALVRENFIGCVKSTWKG 801
            S+ SWADKGQW +    A D   RK   FRIGFEPLF D+TQ G+ ++ + L E      IA LV N  +Q  L C ++ +  ++L+  +PF+NS++  V  M +L DA+ +G++  A+      +  + ++D     A+++ Q L I   V+PLY+D  +++ G I  + G       E  + + + +K L    W      +F +V  N   C++ T +G
Sbjct:  461 SLFSWADKGQWETVQT-ANDKARRKADWFRIGFEPLFADFTQAGSWFIIYTLIECAVLASIAVLVDNSAMQFLLFCAMHSLTFVLLVGWKPFANSVLNAVAAMVMLTDAVCMGMLALAAGTF-NGTATAARMD----TAVMVIQALCIAVLVIPLYVDTAVSIYGMIRNRKGSVDERENEADRAEREVTKRLTLRLWGRA---WFRMVFSNMFACLRDTREG 673          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig973.22405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3P1_ECTSI1.680e-12867.12Similar to Mucin-1 (MUC-1) (Polymorphic epithelial... [more]
A0A6H5LAH5_9PHAE6.220e-10559.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIK9_ECTSI2.640e-7951.25Beta strand repeat-containing protein n=1 Tax=Ecto... [more]
A0A6H5JTC8_9PHAE1.590e-7848.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLG6_ECTSI2.960e-2831.21Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JD90_9PHAE1.000e-2731.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWS4_ECTSI1.460e-2631.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTJ3_9PHAE6.230e-2431.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN93_ECTSI1.110e-2328.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9C2_9PHAE4.590e-2231.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig973contigM-pyrifera_M_contig973:25728..29643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score264.6
Seed ortholog evalue5.4e-68
Seed eggNOG ortholog2880.D8LIK9
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.structural constituent of cuticle
EggNOG OGsKOG3544@1,KOG3544@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size900
Cds size882
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig973.22405.1prot_M-pyrifera_M_contig973.22405.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig973 25728..29625 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816889.4197543-CDS-M-pyrifera_M_contig973:25727..258521622816889.4197543-CDS-M-pyrifera_M_contig973:25727..25852Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig973 25728..25852 -
1692278238.4171991-CDS-M-pyrifera_M_contig973:25727..258521692278238.4171991-CDS-M-pyrifera_M_contig973:25727..25852Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig973 25728..25852 -
1622816889.430701-CDS-M-pyrifera_M_contig973:27009..270791622816889.430701-CDS-M-pyrifera_M_contig973:27009..27079Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig973 27010..27079 -
1692278238.431891-CDS-M-pyrifera_M_contig973:27009..270791692278238.431891-CDS-M-pyrifera_M_contig973:27009..27079Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig973 27010..27079 -
1622816889.4411626-CDS-M-pyrifera_M_contig973:27313..274331622816889.4411626-CDS-M-pyrifera_M_contig973:27313..27433Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig973 27314..27433 -
1692278238.4440737-CDS-M-pyrifera_M_contig973:27313..274331692278238.4440737-CDS-M-pyrifera_M_contig973:27313..27433Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig973 27314..27433 -
1622816889.451721-CDS-M-pyrifera_M_contig973:27824..279411622816889.451721-CDS-M-pyrifera_M_contig973:27824..27941Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig973 27825..27941 -
1692278238.456686-CDS-M-pyrifera_M_contig973:27824..279411692278238.456686-CDS-M-pyrifera_M_contig973:27824..27941Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig973 27825..27941 -
1622816889.4670749-CDS-M-pyrifera_M_contig973:28147..282721622816889.4670749-CDS-M-pyrifera_M_contig973:28147..28272Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig973 28148..28272 -
1692278238.4688966-CDS-M-pyrifera_M_contig973:28147..282721692278238.4688966-CDS-M-pyrifera_M_contig973:28147..28272Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig973 28148..28272 -
1622816889.4775758-CDS-M-pyrifera_M_contig973:28966..291751622816889.4775758-CDS-M-pyrifera_M_contig973:28966..29175Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig973 28967..29175 -
1692278238.4810834-CDS-M-pyrifera_M_contig973:28966..291751692278238.4810834-CDS-M-pyrifera_M_contig973:28966..29175Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig973 28967..29175 -
1622816889.4884098-CDS-M-pyrifera_M_contig973:29509..296251622816889.4884098-CDS-M-pyrifera_M_contig973:29509..29625Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig973 29510..29625 -
1692278238.4929132-CDS-M-pyrifera_M_contig973:29509..296251692278238.4929132-CDS-M-pyrifera_M_contig973:29509..29625Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig973 29510..29625 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816889.5004852-UTR-M-pyrifera_M_contig973:29625..296431622816889.5004852-UTR-M-pyrifera_M_contig973:29625..29643Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig973 29626..29643 -
1692278238.5059633-UTR-M-pyrifera_M_contig973:29625..296431692278238.5059633-UTR-M-pyrifera_M_contig973:29625..29643Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig973 29626..29643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig973.22405.1

>prot_M-pyrifera_M_contig973.22405.1 ID=prot_M-pyrifera_M_contig973.22405.1|Name=mRNA_M-pyrifera_M_contig973.22405.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=294bp
MFVYVNRIVWSRLCTERSPVLFTPHPNARRGCCLFNACRDICGAWRTGSS
MLSWADKGQWVSKNDEAVDLDSRKFRIGFEPLFVDYTQRGTLYVTFLLFE
WIAFGLIAGLVTNGTIQTSLICLIYVMDLIILICLQPFSNSIIQCVTTMT
VLADALTLGLMVYASVLEPEDSVDSDKLDLIYTGALLIQQTLTIIFFVVP
LYLDAFITVIGTICTKAGELLKGKTKKSKTLIRGSWDETMWIFFALVREN
FIGCVKSTWKGPSYNPTANAQRVLRRRSTLLHRESRGGKQGGY*
back to top

mRNA from alignment at M-pyrifera_M_contig973:25728..29643-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig973.22405.1 ID=mRNA_M-pyrifera_M_contig973.22405.1|Name=mRNA_M-pyrifera_M_contig973.22405.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3916bp|location=Sequence derived from alignment at M-pyrifera_M_contig973:25728..29643- (Macrocystis pyrifera P11B4 male)
GTCGTTTTCCCGTTGCTGATGTTCGTCTACGTGAACCGCATCGTGTGGAG CCGTTTGTGCACGGAACGCTCCCCCGTGCTCTTCACGCCGCACCCGAACG CTCGGAGAGGCTGCTGCCTCTTCAACGCGTGCAGGTGCGTGTCTGCAATG GCTTTGTATACCGATCGAGCGTTTTTTATTTTTTTTTCTGGTACACGTTA CATGGCATGTGACATGCGGTAAGGTGGTTTAAAACATAGGGATATCTAGT TTACGGGTATCTGGCACCCAAGTATCTTTAGAATCGTTTGTATTTGGTAC GTACGTACGTAACGTACGTACTTCTGTTACATTGGTATATGGTACCTGGT TGTATTCGTTGTTTGTTATCTTTGTTGTCGTTTTCTGTGGTGTTTGTTGT TGCACTGTAGTTGTTGCTTGGTGAGGGTGTCATTTTCAATGTTTGTTTTG CTTATTTTGTCTCGACAGGGACATCTGCGGGGCTTGGAGGACCGGCTCTT CCATGCTATCGTGGGCGGACAAGGGCCAGTGGGTTTCCAAGAACGACGAG GCGGTTGACCTAGACAGCCGTAAGTTCCGGATAGGCTTCGAGCCGCTTTT CGTGGACTACACGCAGAGGGGCACCCTCTACGTGACCTTCTTGCTCTTCG AGTGGATCGCCTTCGGACTTATCGCCGGTGAGAGAGGGAGATGGAAGGAG GGGTGGGGGGGGAGGAGGGCGGGCGGAGGGAGGTGCAGTTTGGTGGGTGG AGGGAGAGGGGCGAAGTGGAGGGGTGGAGGGAGGGAGGGCGGGGGGAGAG GTGGAGGTTAGGAGGAGGGGGGGGGAGTTTGATGGGTAGAGGGGAGGGGA TGGGAACGGGGGGGGAGGGGAAGAGGGAGAGGCAGATATATGCACAGAAG GTTAAGACGTACACGTATAGACAGAGGGGGTGGGGGGATGTATTCATGTT ATGCATGACCGAAGTTTTATGGCCATAAGAGGGGGTGGGGGGAGGCAAGA GAGAAGAGTCATCTGGGCGGGGGGAGGGGGGGAAGGGGAGACAGAGGGGG GGAGAGGCGGATGTATGTACAGATAGAGGTTAAGATGTACATGCATAGAG AGAGGGGGGGTGGGGGGGTTGTGTACTCATGTTACGCATGACCGTAGTCG TATTACCATAAGAGAGAGGGGGGGGTGGGGGGGCAGAGAGAGAGGAGCCA TCTCTCTCTTGCGTGAATAACCGAGTTTTGTTCGCTCGCGTTCTTCCGGC AGTGTTGAATGACCCCCCCCCCCTCCCTTCGTTTTCCTCTGTCTCCCGCC CCCTTCCTCATCGGGAAATCCTGTGTCCTTGCATTCGTTTGTTCGGCGGT GTTTTGTTTTTTCGGTGCCAGGTCTGGTGACGAACGGCACCATCCAGACG AGCTTGATCTGCTTGATCTACGTGATGGACCTGATTATTCTGATCTGCCT CCAACCGTTCTCCAATTCGATCATCCAATGCGTCACCACCATGACGGTGA GCGAGGACGAAGAAAACAGGGCAGGCCGTCGGTATGCGGCATTTAGTACC GACGGAATAACCACCACCCCAGGAAAACTCATCGCACCGCCCGCGGAAAT AGATGGGGGGTAATCAACAATTGAGTATTTTTACCTGGTGATTGTTCACT CTCGTCAATGGATTGGTGTATCAATTGCACTTCATTTTTTTTTCTGGGGC AGGTGCTGGCGGATGCTCTGACGCTGGGACTGATGGTCTACGCCTCGGTG CTGGAACCGGAAGATTCGGTAGACTCGGACAAGCTGGACTTGATCTACAC GGGGGCTCTGCTAATCCAGGTTCGGTTTGTGTTCGTTTGTGTGTTAGGCT GTCCGTTTGTTCTTACTTGGTTTGTCATGGTTAGTGTGTTTACTTTTATT ATTTTTAGTATTACGGGGGACCATAGTGAATAGGATCAGATATTGTTAGT AAAAATAGCGAAATGCATTGTTTTTTGTGTGCACCGTAGGTCCTATCCCG TAATAGTCTGTTGGTCTGCTTGTTCTGGTCTTTTGCTCTGTGTACATGGC GATACAAAATTTCGGGGATGTTGAATCAAATTTCGAGTACATAGTCTTCT GTTTTCAAGCACGTTCCCCTTTTTTCGTGTCTGCTGTCCTATATACCCCC CCCCCCCCTAACTCCTCCTTAACTCTTCCGCCTCTCCCCCCCCCCTCACG CTCTCTCGAGCAGACGCTGACGATCATTTTCTTCGTCGTGCCTTTATACC TGGACGCGTTCATCACCGTCATCGGCACCATCTGTACCAAGGCCGGTGAA TTGCTAAAGGGAAAGACTAAGAAGTCTAAGGTAAGAAGTTGCCCTGCTTA CTACCCCCCCCCCCTCCCTCCTCTACTCGCTCTGTCTCTATCTGTCTGTC TATGTGTGTGTGTCTCTCTTCCCGCTGACTCACCCACCCCTGACTTTCCA TTATGTGCATGTATATTTTCATTGTGGCCCACTTCCATACGAGTATACAT TCGTGGTCTCTCTTTTATCGTACTTATGTTTTTTTTTTCTGTTGTGTCTT TTCGCTCTTCCCAGACTCTCATCAGGGGATCGTGGGACGAAACCATGTGG ATCTTCTTCGCTCTCGTGCGGGAGAACTTTATCGGTGAGATTAGCGGTTT GCAAGAGTAGACGGCGACGGCAAGACTAGAAACGACCAATGGCATTCCGA CCGAAAGTACCGACCGACCGATATACCAACCGACCGATTCGCTGACCCCG ACGGAAAGACAAGGAACAACCGAGAACAATTCGACCGATTTACCGTACCG ACCGATCCGACCGACCAATATACCAACCGACCGATCTGCTGACCGCGACG GATTTACTAGGAACGACCAATAATAATCCGACTGAACTACCGACCGACCG ATAGCTGAGCGCGACGGAAATACTAGGAACGACCAATATTATTCCGACTG GAGTACCGACCGACTAATTGCTGACCGCGACGGAAATAGTAGGAACGGCG ACATTTCAAATTAAGTACCGACCGACCACTTCGACCGACCGATCTACCTA CCGACCGACTGATATGCCGACTAATCGATCTACCGACCGACGGATATACC AACTGACTGATACATGGGCTTGTATCCATGACAGTCTATGCTCGCAATTA TTTCGGCATAATTGGGCGTTTGTAAGGGCATGAAACTATCTTCACTGAGT ATAATTGTTTATTTTTTCGGGGGGAGGGTGGAGATTTTCGAGCACAGGCA GCATAATTGGGGGCAAACATTATAGTACAATTGCTTTATGTTCCTTTTTC CACAAAATAACATACAACCAAGAATTATAAGCAGAATAACATGAATAAGA CTACTGGTATAGCCACCAACCGATATGTCAACCGACCGTTATTTATCGAC CATCTATGAGGCAATCGAGTGGCCAACCGATGCACCAACCGACCTATACA CCAACGGAGTTTCTGCTGACCGACCCATCTACCGACCTTTTTAAACCGAC CGTTAGCCTACCGACTTATCTGTGGAGTGACTGATCGTCATGCACCGACC GACCGCCATGTCGACCGACCGGCCGATCGATCGACCGACGGACCGCACGT ATGTACGCAAAATACGTTATGTTTTTCGTCGCTTGCATTATCTGTGTGTG TCTCTCTCTTTCATGCGCACTTTCTCATGACGCTCTCTCTGCCTCGCGCT TTTCTCTTTTCGCCTGCACCTCTGCTTTCTGTCGTTTGCTCTGTTTGTTC GTTTGTGTGTTTTCTGGTTTTTCGGTTCGTTGGTTGGTCAGGCTGCGTCA AGTCCACCTGGAAGGGCCCCTCGTACAACCCTACCGCTAACGCTCAACGC GTACTGCGCCGACGGTCCACTTTGCTGCACCGTGAGTCTCGGGGGGGAAA ACAAGGGGGGTATTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig973:25728..29643-

>mRNA_M-pyrifera_M_contig973.22405.1 ID=mRNA_M-pyrifera_M_contig973.22405.1|Name=mRNA_M-pyrifera_M_contig973.22405.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1764bp|location=Sequence derived from alignment at M-pyrifera_M_contig973:25728..29643- (Macrocystis pyrifera P11B4 male)
ATGTTCGTCTACGTGAACCGCATCGTGTGGAGCCGTTTGTGCACGGAACG
CTCCCCCGTGCTCTTCACGCCGCACCCGAACGCTCGGAGAGGCTGCTGCC
TCTTCAACGCGTGCAGATGTTCGTCTACGTGAACCGCATCGTGTGGAGCC
GTTTGTGCACGGAACGCTCCCCCGTGCTCTTCACGCCGCACCCGAACGCT
CGGAGAGGCTGCTGCCTCTTCAACGCGTGCAGGGACATCTGCGGGGCTTG
GAGGACCGGCTCTTCCATGCTATCGTGGGCGGACAAGGGCCAGTGGGTTT
CCAAGAACGACGAGGCGGTTGACCTAGACAGCCGTAAGTTCCGGATAGGC
TTCGAGCCGCTTTTCGTGGACTACACGCAGAGGGGCACCCTCTACGTGAC
CTTCTTGCTCTTCGAGTGGATCGCCTTCGGACTTATCGCCGGGACATCTG
CGGGGCTTGGAGGACCGGCTCTTCCATGCTATCGTGGGCGGACAAGGGCC
AGTGGGTTTCCAAGAACGACGAGGCGGTTGACCTAGACAGCCGTAAGTTC
CGGATAGGCTTCGAGCCGCTTTTCGTGGACTACACGCAGAGGGGCACCCT
CTACGTGACCTTCTTGCTCTTCGAGTGGATCGCCTTCGGACTTATCGCCG
GTCTGGTGACGAACGGCACCATCCAGACGAGCTTGATCTGCTTGATCTAC
GTGATGGACCTGATTATTCTGATCTGCCTCCAACCGTTCTCCAATTCGAT
CATCCAATGCGTCACCACCATGACGGTCTGGTGACGAACGGCACCATCCA
GACGAGCTTGATCTGCTTGATCTACGTGATGGACCTGATTATTCTGATCT
GCCTCCAACCGTTCTCCAATTCGATCATCCAATGCGTCACCACCATGACG
GTGCTGGCGGATGCTCTGACGCTGGGACTGATGGTCTACGCCTCGGTGCT
GGAACCGGAAGATTCGGTAGACTCGGACAAGCTGGACTTGATCTACACGG
GGGCTCTGCTAATCCAGGTGCTGGCGGATGCTCTGACGCTGGGACTGATG
GTCTACGCCTCGGTGCTGGAACCGGAAGATTCGGTAGACTCGGACAAGCT
GGACTTGATCTACACGGGGGCTCTGCTAATCCAGCAGACGCTGACGATCA
TTTTCTTCGTCGTGCCTTTATACCTGGACGCGTTCATCACCGTCATCGGC
ACCATCTGTACCAAGGCCGGTGAATTGCTAAAGGGAAAGACTAAGAAGTC
TAAGCAGACGCTGACGATCATTTTCTTCGTCGTGCCTTTATACCTGGACG
CGTTCATCACCGTCATCGGCACCATCTGTACCAAGGCCGGTGAATTGCTA
AAGGGAAAGACTAAGAAGTCTAAGACTCTCATCAGGGGATCGTGGGACGA
AACCATGTGGATCTTCTTCGCTCTCGTGCGGGAGAACTTTATCGACTCTC
ATCAGGGGATCGTGGGACGAAACCATGTGGATCTTCTTCGCTCTCGTGCG
GGAGAACTTTATCGGCTGCGTCAAGTCCACCTGGAAGGGCCCCTCGTACA
ACCCTACCGCTAACGCTCAACGCGTACTGCGCCGACGGTCCACTTTGCTG
CACCGTGAGTCTCGGGGGGGAAAACAAGGGGGGTATTGAGCTGCGTCAAG
TCCACCTGGAAGGGCCCCTCGTACAACCCTACCGCTAACGCTCAACGCGT
ACTGCGCCGACGGTCCACTTTGCTGCACCGTGAGTCTCGGGGGGGAAAAC
AAGGGGGGTATTGA
back to top